Wall clock time and date at job start Mon Mar 30 2020 02:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00088 * 2 1 4 4 C 1.46901 * 111.00510 * 123.95246 * 2 1 3 5 5 C 1.53006 * 109.46871 * 76.72363 * 4 2 1 6 6 H 1.08998 * 109.50859 * 307.58272 * 5 4 2 7 7 C 1.53094 * 109.50569 * 187.45075 * 5 4 2 8 8 O 1.43021 * 109.29274 * 183.23859 * 7 5 4 9 9 C 1.43010 * 113.73550 * 58.60395 * 8 7 5 10 10 C 1.53106 * 109.29355 * 301.39631 * 9 8 7 11 11 N 1.47013 * 109.50489 * 67.66888 * 5 4 2 12 12 C 1.46901 * 111.00072 * 302.32900 * 11 5 4 13 13 C 1.50696 * 109.46958 * 302.29085 * 12 11 5 14 14 H 1.07997 * 120.00484 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00007 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00208 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99854 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47102 * 90.00555 * 17 15 13 19 19 H 1.48504 * 109.46888 * 210.00541 * 17 15 13 20 20 H 1.48497 * 109.47126 * 330.00090 * 17 15 13 21 21 H 1.08999 * 109.47059 * 291.48833 * 1 2 3 22 22 H 1.08997 * 109.47337 * 51.48945 * 1 2 3 23 23 H 1.09004 * 109.47270 * 171.49304 * 1 2 3 24 24 H 1.08999 * 109.47467 * 183.94972 * 3 2 1 25 25 H 1.09000 * 109.47149 * 303.95879 * 3 2 1 26 26 H 1.09006 * 109.47125 * 63.95257 * 3 2 1 27 27 H 1.09003 * 109.47054 * 316.72790 * 4 2 1 28 28 H 1.09000 * 109.47491 * 196.72518 * 4 2 1 29 29 H 1.09000 * 109.51002 * 303.15492 * 7 5 4 30 30 H 1.09011 * 109.50642 * 63.24321 * 7 5 4 31 31 H 1.08999 * 109.50986 * 181.44335 * 9 8 7 32 32 H 1.08997 * 109.51024 * 61.35197 * 9 8 7 33 33 H 1.08996 * 109.50474 * 176.75994 * 10 9 8 34 34 H 1.08992 * 109.50651 * 296.89827 * 10 9 8 35 35 H 1.08997 * 109.46975 * 62.28845 * 12 11 5 36 36 H 1.09003 * 109.46670 * 182.29100 * 12 11 5 37 37 H 0.97002 * 120.00178 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.8690 -2.2628 0.8468 6 1 0.8426 -2.4926 0.5609 7 6 2.2426 -3.0601 2.0992 8 8 2.1959 -4.4581 1.8007 9 6 3.0685 -4.8490 0.7372 10 6 2.7033 -4.0697 -0.5291 11 7 2.7776 -2.6283 -0.2496 12 6 2.4888 -1.8425 -1.4567 13 6 1.0543 -2.0576 -1.8650 14 1 0.4205 -2.7129 -1.2860 15 6 0.5511 -1.4187 -2.9783 16 7 -0.7010 -1.6061 -3.3343 17 14 1.6475 -0.2858 -3.9803 18 1 2.3278 -1.0682 -5.0434 19 1 0.8212 0.7801 -4.6020 20 1 2.6648 0.3315 -3.0920 21 1 -0.3633 0.3764 0.9562 22 1 -0.3634 0.6399 -0.8041 23 1 -0.3634 -1.0164 -0.1520 24 1 3.0827 1.3433 -0.0708 25 1 1.5897 1.9164 -0.8524 26 1 1.7043 1.8724 0.9233 27 1 1.4272 -0.5208 2.0349 28 1 3.0445 -0.5131 1.2915 29 1 3.2498 -2.7896 2.4160 30 1 1.5366 -2.8342 2.8985 31 1 2.9595 -5.9175 0.5511 32 1 4.1000 -4.6311 1.0139 33 1 3.4024 -4.3224 -1.3262 34 1 1.6903 -4.3291 -0.8366 35 1 2.6530 -0.7850 -1.2497 36 1 3.1481 -2.1613 -2.2641 37 1 -1.0551 -1.1563 -4.1174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260582428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:08 Heat of formation + Delta-G solvation = -30.038643 kcal Electronic energy + Delta-G solvation = -17804.898010 eV Core-core repulsion = 15196.600319 eV Total energy + Delta-G solvation = -2608.297691 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76893 -38.30995 -36.24291 -34.27852 -32.66607 -30.39954 -28.38332 -27.71950 -26.74463 -24.13324 -23.27915 -22.24208 -20.69523 -18.68548 -17.29148 -17.20053 -16.71076 -16.09500 -15.95638 -15.91540 -15.26945 -15.11339 -14.87168 -14.30634 -13.78520 -13.39822 -13.20441 -13.02714 -12.82225 -12.69342 -12.45824 -12.41084 -12.20289 -11.87474 -11.81920 -11.64194 -11.52062 -11.21272 -10.53612 -10.42193 -8.92835 -8.61838 -8.07259 -5.99941 1.39583 1.42908 1.55872 2.51114 2.98013 3.22013 3.32584 3.33624 4.08210 4.23897 4.30558 4.33434 4.39505 4.48211 4.52981 4.57209 4.64175 4.72076 4.79275 4.81841 4.86431 5.04679 5.06503 5.12293 5.24641 5.31595 5.42267 5.65119 5.85286 6.24158 6.29888 6.32455 6.42391 6.54427 6.60069 6.97514 7.60465 9.09410 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.025880 B = 0.012287 C = 0.010009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.636079 B = 2278.288241 C = 2796.879761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.534 5.534 3 C 0.026 3.974 4 C 0.075 3.925 5 C 0.057 3.943 6 H 0.019 0.981 7 C 0.072 3.928 8 O -0.407 6.407 9 C 0.071 3.929 10 C 0.020 3.980 11 N -0.518 5.518 12 C 0.150 3.850 13 C -0.475 4.475 14 H 0.022 0.978 15 C 0.023 3.977 16 N -0.959 5.959 17 Si 0.926 3.074 18 H -0.288 1.288 19 H -0.299 1.299 20 H -0.237 1.237 21 H 0.024 0.976 22 H 0.040 0.960 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.008 0.992 35 H 0.092 0.908 36 H -0.007 1.007 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.616 2.224 10.462 13.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.257 5.257 3 C -0.122 4.122 4 C -0.053 4.053 5 C -0.053 4.053 6 H 0.037 0.963 7 C -0.005 4.005 8 O -0.326 6.326 9 C -0.005 4.005 10 C -0.109 4.109 11 N -0.242 5.242 12 C 0.023 3.977 13 C -0.514 4.514 14 H 0.040 0.960 15 C -0.172 4.172 16 N -0.603 5.603 17 Si 0.753 3.247 18 H -0.215 1.215 19 H -0.226 1.226 20 H -0.160 1.160 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.027 0.973 35 H 0.109 0.891 36 H 0.011 0.989 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.046 2.046 10.177 13.769 hybrid contribution -1.355 0.683 -1.011 1.823 sum 7.690 2.729 9.166 12.272 Atomic orbital electron populations 1.22020 0.87713 1.01242 0.97739 1.62089 1.07752 1.13328 1.42546 1.22406 1.00844 0.88702 1.00268 1.21985 1.00720 0.91656 0.90964 1.22179 0.94790 0.95844 0.92470 0.96278 1.22756 1.02467 0.79922 0.95347 1.87892 1.65734 1.24958 1.53968 1.22744 0.93780 0.99033 0.84974 1.22666 0.99256 0.90283 0.98684 1.62776 1.49830 1.03494 1.08120 1.20590 0.92363 0.97759 0.86960 1.21431 0.96797 1.24169 1.09014 0.96021 1.25388 0.95376 0.97928 0.98510 1.70088 1.16192 1.46514 1.27487 0.86032 0.80058 0.79431 0.79166 1.21467 1.22554 1.16006 0.95797 0.94132 0.93545 0.90750 0.92886 0.94492 0.93085 0.89290 0.90894 0.87609 0.87447 0.91030 0.90427 0.97341 0.89110 0.98932 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.44 8.28 127.69 1.06 3.50 16 2 N -0.53 -19.64 1.17 -948.83 -1.11 -20.74 16 3 C 0.03 0.76 9.21 127.69 1.18 1.94 16 4 C 0.07 2.37 4.34 86.30 0.37 2.75 16 5 C 0.06 2.10 1.94 44.93 0.09 2.19 16 6 H 0.02 0.89 5.18 -2.39 -0.01 0.88 16 7 C 0.07 2.15 6.29 72.01 0.45 2.61 16 8 O -0.41 -13.68 10.83 -148.98 -1.61 -15.29 16 9 C 0.07 2.17 7.01 72.02 0.50 2.67 16 10 C 0.02 0.78 5.38 86.32 0.46 1.24 16 11 N -0.52 -20.78 4.75 -874.54 -4.15 -24.93 16 12 C 0.15 6.99 3.60 85.56 0.31 7.30 16 13 C -0.47 -25.89 5.12 25.60 0.13 -25.76 16 14 H 0.02 1.36 5.76 -2.91 -0.02 1.35 16 15 C 0.02 1.32 5.38 84.66 0.46 1.78 16 16 N -0.96 -59.43 13.96 21.45 0.30 -59.13 16 17 Si 0.93 44.78 27.47 68.60 1.88 46.66 16 18 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 19 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 20 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 21 H 0.02 0.81 7.98 -2.39 -0.02 0.79 16 22 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 23 H 0.05 2.24 5.47 -2.38 -0.01 2.22 16 24 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 25 H 0.05 1.66 8.07 -2.39 -0.02 1.64 16 26 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.05 1.40 7.87 -2.39 -0.02 1.38 16 28 H 0.09 2.52 7.87 -2.39 -0.02 2.50 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 31 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 2.85 8.12 -2.39 -0.02 2.83 16 34 H 0.01 0.39 6.92 -2.39 -0.02 0.37 16 35 H 0.09 4.14 4.14 -2.39 -0.01 4.13 16 36 H -0.01 -0.36 7.54 -2.39 -0.02 -0.37 16 37 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -65.58 275.52 1.30 -64.28 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.98 Total: 8.93 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 5.01 Total: 0.21 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -4.96 Total: -104.80 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.61 Total: -15.29 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -65.58 1.30 -64.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260582428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.243 kcal (2) G-P(sol) polarization free energy of solvation -65.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds