Wall clock time and date at job start Mon Mar 30 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31467 * 1 3 3 Si 1.86799 * 120.00416 * 2 1 4 4 H 1.48500 * 109.47141 * 95.70013 * 3 2 1 5 5 H 1.48503 * 109.46827 * 215.69873 * 3 2 1 6 6 H 1.48498 * 109.47070 * 335.70145 * 3 2 1 7 7 C 1.38886 * 119.99496 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00083 * 25.74227 * 7 2 1 9 9 N 1.37195 * 120.00017 * 205.74397 * 7 2 1 10 10 C 1.47118 * 125.56207 * 11.63257 * 9 7 2 11 11 C 1.53977 * 103.73162 * 180.02562 * 10 9 7 12 12 C 1.52215 * 110.22901 * 241.29864 * 11 10 9 13 13 C 1.54300 * 112.52978 * 237.71951 * 12 11 10 14 14 S 1.83968 * 102.59017 * 24.48210 * 13 12 11 15 15 C 1.54140 * 109.20621 * 116.94724 * 11 10 9 16 16 O 1.45560 * 104.13357 * 359.97438 * 11 10 9 17 17 C 1.33844 * 109.41944 * 359.73640 * 16 11 10 18 18 O 1.21514 * 123.07954 * 180.26238 * 17 16 11 19 19 H 0.97006 * 119.99340 * 359.97438 * 1 2 3 20 20 H 1.09002 * 110.57247 * 298.55911 * 10 9 7 21 21 H 1.08993 * 110.57673 * 61.28810 * 10 9 7 22 22 H 1.08999 * 108.88002 * 358.52449 * 12 11 10 23 23 H 1.08999 * 108.87912 * 117.05921 * 12 11 10 24 24 H 1.09005 * 110.78531 * 142.75615 * 13 12 11 25 25 H 1.08992 * 110.78785 * 266.01531 * 13 12 11 26 26 H 1.09008 * 110.79922 * 216.62669 * 15 11 10 27 27 H 1.08997 * 110.80043 * 340.10716 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 2.6167 1.9768 1.3932 5 1 3.4809 1.4777 -0.8170 6 1 1.3913 2.6844 -0.5761 7 6 2.0090 -1.2028 0.0005 8 1 1.5493 -2.0919 -0.4053 9 7 3.2788 -1.2617 0.5166 10 6 3.9297 -0.2075 1.3099 11 6 5.3203 -0.7904 1.6215 12 6 5.5064 -0.9329 3.1255 13 6 6.7331 -0.1549 3.6458 14 16 6.9478 1.1542 2.3712 15 6 6.3995 0.0962 0.9694 16 8 5.3098 -2.0971 0.9802 17 6 4.1265 -2.2915 0.3856 18 8 3.8481 -3.3067 -0.2213 19 1 -0.4849 0.8402 0.0004 20 1 4.0209 0.7092 0.7273 21 1 3.3745 -0.0220 2.2293 22 1 4.6136 -0.5609 3.6282 23 1 5.6323 -1.9883 3.3669 24 1 6.5267 0.2853 4.6214 25 1 7.6097 -0.8010 3.6924 26 1 7.2251 -0.5101 0.5964 27 1 5.9718 0.7026 0.1712 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260777683.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:36 Heat of formation + Delta-G solvation = -48.244092 kcal Electronic energy + Delta-G solvation = -14602.981008 eV Core-core repulsion = 12067.261889 eV Total energy + Delta-G solvation = -2535.719119 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.14699 -36.80168 -35.14708 -34.20272 -32.15496 -29.92249 -26.97104 -25.37546 -24.14771 -21.35719 -19.97073 -17.93321 -17.04297 -16.28475 -16.12295 -15.48918 -14.86860 -14.73803 -14.28444 -13.87938 -13.46325 -12.86380 -12.66128 -12.46723 -12.22937 -12.09105 -11.87875 -11.45186 -10.93757 -10.59150 -10.34942 -10.07560 -9.88321 -9.57092 -9.32959 -8.24653 -7.88219 -6.57821 -4.03658 1.63553 2.04786 2.91786 3.04232 3.11550 3.42223 3.61841 3.97030 4.09709 4.21673 4.39651 4.59054 4.87363 4.97299 5.00187 5.23080 5.37128 5.53301 5.57803 5.58726 5.78868 5.90226 6.14188 7.45524 7.99659 8.30982 8.65431 9.07834 9.50649 10.53664 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.028679 B = 0.012343 C = 0.009643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.085226 B = 2267.987714 C = 2903.038808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.059 3.941 3 Si 0.870 3.130 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.283 1.283 7 C -0.308 4.308 8 H 0.124 0.876 9 N -0.468 5.468 10 C 0.054 3.946 11 C 0.097 3.903 12 C -0.130 4.130 13 C -0.062 4.062 14 S -0.281 6.281 15 C -0.069 4.069 16 O -0.331 6.331 17 C 0.586 3.414 18 O -0.549 6.549 19 H 0.278 0.722 20 H 0.081 0.919 21 H 0.095 0.905 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.111 0.889 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 4.565 7.604 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.147 4.147 3 Si 0.697 3.303 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.433 4.433 8 H 0.141 0.859 9 N -0.203 5.203 10 C -0.070 4.070 11 C 0.056 3.944 12 C -0.169 4.169 13 C -0.210 4.210 14 S -0.056 6.056 15 C -0.218 4.218 16 O -0.243 6.243 17 C 0.340 3.660 18 O -0.439 6.439 19 H 0.088 0.912 20 H 0.099 0.901 21 H 0.113 0.887 22 H 0.115 0.885 23 H 0.117 0.883 24 H 0.130 0.870 25 H 0.114 0.886 26 H 0.129 0.871 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.741 5.183 7.362 14.795 hybrid contribution -0.105 0.020 -0.174 0.205 sum 11.636 5.203 7.188 14.633 Atomic orbital electron populations 1.69800 1.05865 1.28285 1.44916 1.24968 0.95150 0.97891 0.96692 0.87246 0.79847 0.84046 0.79151 1.19314 1.19548 1.20921 1.18929 0.84802 0.98794 1.40733 0.85866 1.43879 1.14412 1.13802 1.48192 1.23378 0.91234 0.93778 0.98601 1.23392 0.96114 0.82047 0.92817 1.22227 0.99321 1.03494 0.91862 1.24124 1.00484 0.96769 0.99608 1.88005 1.89122 1.22477 1.05973 1.24549 1.00624 0.98238 0.98340 1.87260 1.35518 1.34508 1.67057 1.18229 0.78945 0.86118 0.82661 1.90899 1.76247 1.29610 1.47105 0.91151 0.90120 0.88710 0.88501 0.88307 0.87030 0.88607 0.87132 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.76 13.96 55.49 0.77 -22.98 15 2 C 0.06 1.58 5.43 -17.47 -0.09 1.49 15 3 Si 0.87 19.45 24.31 -169.99 -4.13 15.31 15 4 H -0.27 -5.50 6.76 56.52 0.38 -5.12 15 5 H -0.27 -5.91 6.74 56.52 0.38 -5.53 15 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.31 -8.59 10.23 -14.91 -0.15 -8.75 15 8 H 0.12 3.81 7.93 -52.49 -0.42 3.39 15 9 N -0.47 -11.56 2.96 -119.65 -0.35 -11.91 15 10 C 0.05 1.07 4.45 -3.19 -0.01 1.06 15 11 C 0.10 1.61 1.30 -89.91 -0.12 1.50 15 12 C -0.13 -1.66 5.89 -26.45 -0.16 -1.82 15 13 C -0.06 -0.63 7.46 37.84 0.28 -0.35 15 14 S -0.28 -3.68 23.27 -107.50 -2.50 -6.19 15 15 C -0.07 -1.01 6.64 37.75 0.25 -0.76 15 16 O -0.33 -6.81 10.31 -38.01 -0.39 -7.20 15 17 C 0.59 14.65 8.80 53.72 0.47 15.13 15 18 O -0.55 -15.72 17.56 -19.12 -0.34 -16.06 15 19 H 0.28 7.13 8.31 -40.82 -0.34 6.79 15 20 H 0.08 1.62 2.79 -51.93 -0.14 1.47 15 21 H 0.09 1.77 6.87 -51.93 -0.36 1.41 15 22 H 0.10 1.17 6.98 -51.93 -0.36 0.80 15 23 H 0.10 1.21 7.91 -51.93 -0.41 0.80 15 24 H 0.11 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.10 0.85 8.14 -51.93 -0.42 0.42 15 26 H 0.11 1.47 8.12 -51.92 -0.42 1.05 15 27 H 0.12 1.73 7.30 -51.93 -0.38 1.35 15 LS Contribution 235.66 15.07 3.55 3.55 Total: -1.00 -31.13 235.66 -5.43 -36.56 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -2.51 Total: 1.42 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 0.47 Total: 7.50 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.42 Total: -34.90 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.73 Total: -23.26 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.13 Total: 15.31 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -2.50 Total: -6.19 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.13 -5.43 -36.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260777683.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.683 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds