Wall clock time and date at job start Mon Mar 30 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31467 * 1 3 3 Si 1.86799 * 120.00416 * 2 1 4 4 H 1.48500 * 109.47141 * 95.70013 * 3 2 1 5 5 H 1.48503 * 109.46827 * 215.69873 * 3 2 1 6 6 H 1.48498 * 109.47070 * 335.70145 * 3 2 1 7 7 C 1.38886 * 119.99496 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00083 * 25.74227 * 7 2 1 9 9 N 1.37195 * 120.00017 * 205.74397 * 7 2 1 10 10 C 1.47118 * 125.56207 * 11.63257 * 9 7 2 11 11 C 1.53977 * 103.73162 * 180.02562 * 10 9 7 12 12 C 1.52215 * 110.22901 * 241.29864 * 11 10 9 13 13 C 1.54300 * 112.52978 * 237.71951 * 12 11 10 14 14 S 1.83968 * 102.59017 * 24.48210 * 13 12 11 15 15 C 1.54140 * 109.20621 * 116.94724 * 11 10 9 16 16 O 1.45560 * 104.13357 * 359.97438 * 11 10 9 17 17 C 1.33844 * 109.41944 * 359.73640 * 16 11 10 18 18 O 1.21514 * 123.07954 * 180.26238 * 17 16 11 19 19 H 0.97006 * 119.99340 * 359.97438 * 1 2 3 20 20 H 1.09002 * 110.57247 * 298.55911 * 10 9 7 21 21 H 1.08993 * 110.57673 * 61.28810 * 10 9 7 22 22 H 1.08999 * 108.88002 * 358.52449 * 12 11 10 23 23 H 1.08999 * 108.87912 * 117.05921 * 12 11 10 24 24 H 1.09005 * 110.78531 * 142.75615 * 13 12 11 25 25 H 1.08992 * 110.78785 * 266.01531 * 13 12 11 26 26 H 1.09008 * 110.79922 * 216.62669 * 15 11 10 27 27 H 1.08997 * 110.80043 * 340.10716 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 2.6167 1.9768 1.3932 5 1 3.4809 1.4777 -0.8170 6 1 1.3913 2.6844 -0.5761 7 6 2.0090 -1.2028 0.0005 8 1 1.5493 -2.0919 -0.4053 9 7 3.2788 -1.2617 0.5166 10 6 3.9297 -0.2075 1.3099 11 6 5.3203 -0.7904 1.6215 12 6 5.5064 -0.9329 3.1255 13 6 6.7331 -0.1549 3.6458 14 16 6.9478 1.1542 2.3712 15 6 6.3995 0.0962 0.9694 16 8 5.3098 -2.0971 0.9802 17 6 4.1265 -2.2915 0.3856 18 8 3.8481 -3.3067 -0.2213 19 1 -0.4849 0.8402 0.0004 20 1 4.0209 0.7092 0.7273 21 1 3.3745 -0.0220 2.2293 22 1 4.6136 -0.5609 3.6282 23 1 5.6323 -1.9883 3.3669 24 1 6.5267 0.2853 4.6214 25 1 7.6097 -0.8010 3.6924 26 1 7.2251 -0.5101 0.5964 27 1 5.9718 0.7026 0.1712 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260777683.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:35 Heat of formation + Delta-G solvation = -70.269316 kcal Electronic energy + Delta-G solvation = -14603.936093 eV Core-core repulsion = 12067.261889 eV Total energy + Delta-G solvation = -2536.674204 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.83707 -38.59429 -37.01174 -35.62777 -34.18951 -31.07821 -28.53135 -27.23080 -25.39920 -22.96883 -21.56449 -19.80510 -18.39103 -17.99747 -17.83504 -16.95264 -16.53484 -16.14372 -15.75846 -15.36689 -14.86179 -14.52738 -14.29123 -14.20193 -13.58881 -13.28256 -13.03123 -12.83756 -12.62493 -12.17874 -11.92651 -11.73558 -11.56402 -11.22778 -11.09590 -10.24853 -8.85240 -8.65217 -6.18772 0.60552 1.10680 1.14761 1.24020 1.36136 1.71636 1.78332 2.07066 2.52863 2.86540 2.93021 3.07816 3.44697 3.84726 3.91204 4.04258 4.10442 4.21768 4.32197 4.56508 4.73035 4.81536 4.89631 5.47036 5.84293 6.35513 6.58744 7.01627 7.50211 8.50492 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.028679 B = 0.012343 C = 0.009643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.085226 B = 2267.987714 C = 2903.038808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.023 3.977 3 Si 0.935 3.065 4 H -0.228 1.228 5 H -0.263 1.263 6 H -0.278 1.278 7 C -0.337 4.337 8 H 0.069 0.931 9 N -0.474 5.474 10 C 0.046 3.954 11 C 0.096 3.904 12 C -0.131 4.131 13 C -0.047 4.047 14 S -0.287 6.287 15 C -0.073 4.073 16 O -0.327 6.327 17 C 0.584 3.416 18 O -0.601 6.601 19 H 0.287 0.713 20 H 0.086 0.914 21 H 0.111 0.889 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.141 0.859 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.588 6.964 9.639 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.182 4.182 3 Si 0.757 3.243 4 H -0.151 1.151 5 H -0.189 1.189 6 H -0.204 1.204 7 C -0.462 4.462 8 H 0.087 0.913 9 N -0.209 5.209 10 C -0.076 4.076 11 C 0.056 3.944 12 C -0.170 4.170 13 C -0.194 4.194 14 S -0.062 6.062 15 C -0.221 4.221 16 O -0.238 6.238 17 C 0.339 3.661 18 O -0.494 6.494 19 H 0.098 0.902 20 H 0.103 0.897 21 H 0.129 0.871 22 H 0.126 0.874 23 H 0.123 0.877 24 H 0.159 0.841 25 H 0.133 0.867 26 H 0.139 0.861 27 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.810 7.608 9.437 18.375 hybrid contribution -0.788 -0.756 -0.770 1.336 sum 13.022 6.852 8.667 17.078 Atomic orbital electron populations 1.69881 1.07760 1.30062 1.45035 1.25762 0.95829 1.01442 0.95149 0.86198 0.78426 0.78173 0.81454 1.15109 1.18880 1.20403 1.18531 0.86608 0.98028 1.43047 0.91285 1.43784 1.13486 1.15160 1.48432 1.23736 0.92786 0.92668 0.98436 1.23935 0.95050 0.80076 0.95316 1.22271 1.01309 1.04618 0.88776 1.24275 0.99895 0.95629 0.99593 1.88102 1.88914 1.23121 1.06022 1.24505 1.00217 0.98299 0.99088 1.87237 1.32820 1.36921 1.66813 1.18350 0.79887 0.85524 0.82361 1.90839 1.77750 1.31535 1.49316 0.90247 0.89663 0.87116 0.87366 0.87665 0.84078 0.86651 0.86078 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.42 13.96 21.65 0.30 -50.12 15 2 C 0.02 1.21 5.43 84.90 0.46 1.67 15 3 Si 0.93 38.62 24.31 68.60 1.67 40.28 15 4 H -0.23 -8.00 6.76 99.48 0.67 -7.33 15 5 H -0.26 -10.60 6.74 99.48 0.67 -9.93 15 6 H -0.28 -11.27 7.11 99.48 0.71 -10.57 15 7 C -0.34 -19.55 10.23 84.01 0.86 -18.69 15 8 H 0.07 4.63 7.93 -2.91 -0.02 4.60 15 9 N -0.47 -23.69 2.96 -764.12 -2.26 -25.95 15 10 C 0.05 1.73 4.45 86.59 0.39 2.12 15 11 C 0.10 2.95 1.30 -10.34 -0.01 2.93 15 12 C -0.13 -2.83 5.89 30.78 0.18 -2.65 15 13 C -0.05 -0.72 7.46 72.42 0.54 -0.18 15 14 S -0.29 -6.32 23.27 -56.49 -1.31 -7.63 15 15 C -0.07 -1.91 6.64 72.37 0.48 -1.43 15 16 O -0.33 -13.16 10.31 -47.99 -0.49 -13.66 15 17 C 0.58 29.85 8.80 129.91 1.14 30.99 15 18 O -0.60 -36.11 17.56 19.63 0.34 -35.76 15 19 H 0.29 14.73 8.31 -92.70 -0.77 13.96 15 20 H 0.09 3.14 2.79 -2.39 -0.01 3.13 15 21 H 0.11 3.77 6.87 -2.39 -0.02 3.76 15 22 H 0.11 2.13 6.98 -2.39 -0.02 2.11 15 23 H 0.10 2.21 7.91 -2.39 -0.02 2.19 15 24 H 0.14 1.44 8.14 -2.38 -0.02 1.43 15 25 H 0.12 1.41 8.14 -2.39 -0.02 1.40 15 26 H 0.12 2.90 8.12 -2.38 -0.02 2.88 15 27 H 0.11 2.99 7.30 -2.39 -0.02 2.98 15 Total: -1.00 -70.86 235.66 3.40 -67.46 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.12 Total: 10.60 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 4.04 Total: 14.78 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.96 Total: -76.07 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.15 Total: -49.42 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.67 Total: 40.28 kcal Atomic # 16 Polarization: -6.32 SS G_CDS: -1.31 Total: -7.63 kcal Total: -70.86 3.40 -67.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260777683.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.813 kcal (2) G-P(sol) polarization free energy of solvation -70.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds