Wall clock time and date at job start Mon Mar 30 2020 03:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31466 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48504 * 109.46734 * 264.68717 * 3 2 1 5 5 H 1.48497 * 109.47196 * 24.68991 * 3 2 1 6 6 H 1.48500 * 109.47017 * 144.69091 * 3 2 1 7 7 C 1.38888 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99805 * 336.96411 * 7 2 1 9 9 N 1.37190 * 120.00127 * 156.68788 * 7 2 1 10 10 C 1.47128 * 125.56132 * 341.93567 * 9 7 2 11 11 C 1.53960 * 103.72347 * 180.02562 * 10 9 7 12 12 C 1.52807 * 109.94819 * 118.20098 * 11 10 9 13 13 C 1.55182 * 108.92435 * 92.44738 * 12 11 10 14 14 S 1.83995 * 100.92825 * 41.32466 * 13 12 11 15 15 C 1.53577 * 109.53117 * 242.48502 * 11 10 9 16 16 O 1.45540 * 104.14928 * 359.97438 * 11 10 9 17 17 C 1.33847 * 109.41589 * 359.74229 * 16 11 10 18 18 O 1.21513 * 123.08252 * 180.28252 * 17 16 11 19 19 H 0.97003 * 119.99829 * 0.02562 * 1 2 3 20 20 H 1.09001 * 110.57506 * 298.55873 * 10 9 7 21 21 H 1.08999 * 110.57773 * 61.28914 * 10 9 7 22 22 H 1.09004 * 109.60420 * 212.36967 * 12 11 10 23 23 H 1.08996 * 109.60826 * 332.52433 * 12 11 10 24 24 H 1.08998 * 111.13100 * 283.41103 * 13 12 11 25 25 H 1.09004 * 111.16629 * 159.25049 * 13 12 11 26 26 H 1.09004 * 110.35656 * 358.95933 * 15 11 10 27 27 H 1.09001 * 110.35234 * 121.24581 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.6085 1.9815 -1.3941 5 1 1.3946 2.6825 0.5848 6 1 3.4856 1.4751 0.8092 7 6 2.0090 -1.2029 0.0005 8 1 1.5335 -2.1007 0.3670 9 7 3.2969 -1.2517 -0.4696 10 6 3.9329 -0.2411 -1.3293 11 6 5.3543 -0.7904 -1.5486 12 6 5.5855 -1.0601 -3.0348 13 6 6.2220 0.1987 -3.6817 14 16 7.4266 0.6886 -2.3800 15 6 6.3799 0.1890 -0.9589 16 8 5.3733 -2.0378 -0.7989 17 6 4.1831 -2.2246 -0.2159 18 8 3.9281 -3.1898 0.4768 19 1 -0.4850 0.8401 -0.0004 20 1 3.4040 -0.1583 -2.2788 21 1 3.9661 0.7247 -0.8251 22 1 6.2569 -1.9109 -3.1520 23 1 4.6340 -1.2790 -3.5192 24 1 5.4768 0.9781 -3.8407 25 1 6.7301 -0.0516 -4.6130 26 1 5.8750 1.0576 -0.5360 27 1 6.9840 -0.3067 -0.1989 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260777693.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:37 Heat of formation + Delta-G solvation = -49.749527 kcal Electronic energy + Delta-G solvation = -14612.067499 eV Core-core repulsion = 12076.283100 eV Total energy + Delta-G solvation = -2535.784399 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.17787 -36.83831 -35.17796 -34.23678 -32.16065 -29.84180 -26.89871 -25.34349 -24.32384 -21.25235 -20.06526 -17.96522 -17.02850 -16.47356 -16.14307 -15.34802 -14.98104 -14.76972 -14.33080 -13.79511 -13.35093 -12.69610 -12.64552 -12.51597 -12.46451 -12.15789 -12.05829 -11.43521 -11.03588 -10.57479 -10.35422 -10.07970 -9.95072 -9.61293 -9.30417 -8.25998 -7.84379 -6.59621 -4.10019 1.63522 2.08779 2.84104 3.00889 3.07146 3.34094 3.60322 3.93261 4.09000 4.27285 4.38019 4.54818 4.84488 4.93124 4.97938 5.24903 5.33578 5.47487 5.54584 5.65114 5.67182 5.88384 6.14964 7.43201 7.98448 8.29200 8.62658 9.04334 9.47906 10.52300 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.029782 B = 0.011822 C = 0.009582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.952515 B = 2367.900332 C = 2921.506214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.059 3.941 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.305 4.305 8 H 0.122 0.878 9 N -0.469 5.469 10 C 0.052 3.948 11 C 0.095 3.905 12 C -0.127 4.127 13 C -0.066 4.066 14 S -0.281 6.281 15 C -0.074 4.074 16 O -0.327 6.327 17 C 0.588 3.412 18 O -0.546 6.546 19 H 0.278 0.722 20 H 0.094 0.906 21 H 0.077 0.923 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.104 0.896 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.424 5.127 -7.989 14.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.147 4.147 3 Si 0.700 3.300 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.140 0.860 9 N -0.205 5.205 10 C -0.073 4.073 11 C 0.055 3.945 12 C -0.165 4.165 13 C -0.214 4.214 14 S -0.055 6.055 15 C -0.222 4.222 16 O -0.239 6.239 17 C 0.343 3.657 18 O -0.435 6.435 19 H 0.089 0.911 20 H 0.112 0.888 21 H 0.094 0.906 22 H 0.118 0.882 23 H 0.117 0.883 24 H 0.116 0.884 25 H 0.133 0.867 26 H 0.122 0.878 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.376 5.091 -7.675 14.637 hybrid contribution -0.890 0.693 0.162 1.139 sum 10.486 5.784 -7.514 14.138 Atomic orbital electron populations 1.69752 1.05810 1.28259 1.45374 1.25044 0.95229 0.97858 0.96563 0.87171 0.80080 0.84036 0.78758 1.19707 1.20823 1.19357 1.18927 0.83106 0.98144 1.42808 0.86015 1.43851 1.12257 1.19547 1.44807 1.23376 0.91338 0.94643 0.97923 1.23314 0.95594 0.83500 0.92108 1.22547 1.03977 0.98923 0.91085 1.24321 0.98784 0.99321 0.98990 1.87758 1.28720 1.85305 1.03735 1.24349 0.98259 1.00873 0.98761 1.87269 1.34339 1.39061 1.63230 1.18366 0.78711 0.86188 0.82465 1.90904 1.77603 1.32432 1.42552 0.91127 0.88785 0.90572 0.88212 0.88341 0.88424 0.86657 0.87759 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.64 13.96 55.49 0.77 -22.87 15 2 C 0.06 1.57 5.44 -17.47 -0.09 1.47 15 3 Si 0.87 19.15 24.38 -169.99 -4.14 15.00 15 4 H -0.27 -5.38 6.84 56.52 0.39 -4.99 15 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 6 H -0.27 -5.80 6.87 56.52 0.39 -5.42 15 7 C -0.31 -8.43 10.20 -14.91 -0.15 -8.58 15 8 H 0.12 3.73 7.99 -52.48 -0.42 3.31 15 9 N -0.47 -11.46 2.90 -119.65 -0.35 -11.80 15 10 C 0.05 0.99 4.71 -3.20 -0.02 0.98 15 11 C 0.10 1.57 1.32 -89.92 -0.12 1.45 15 12 C -0.13 -1.61 5.52 -25.68 -0.14 -1.75 15 13 C -0.07 -0.69 7.52 38.31 0.29 -0.40 15 14 S -0.28 -3.63 23.23 -107.50 -2.50 -6.13 15 15 C -0.07 -1.09 6.82 37.46 0.26 -0.83 15 16 O -0.33 -6.78 10.35 -38.02 -0.39 -7.18 15 17 C 0.59 14.67 8.80 53.72 0.47 15.14 15 18 O -0.55 -15.61 17.60 -19.11 -0.34 -15.94 15 19 H 0.28 7.07 8.31 -40.82 -0.34 6.74 15 20 H 0.09 1.66 7.32 -51.93 -0.38 1.28 15 21 H 0.08 1.48 2.46 -51.93 -0.13 1.35 15 22 H 0.10 1.23 8.12 -51.93 -0.42 0.80 15 23 H 0.10 1.18 7.43 -51.93 -0.39 0.79 15 24 H 0.10 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.12 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.10 1.50 7.06 -51.93 -0.37 1.13 15 27 H 0.12 1.74 7.98 -51.93 -0.41 1.33 15 LS Contribution 236.47 15.07 3.56 3.56 Total: -1.00 -30.93 236.47 -5.41 -36.34 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -2.52 Total: 1.53 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 0.49 Total: 7.48 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.43 Total: -34.67 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.73 Total: -23.12 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.14 Total: 15.00 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.50 Total: -6.13 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.93 -5.41 -36.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260777693.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.410 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds