Wall clock time and date at job start Mon Mar 30 2020 02:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47013 * 111.00367 * 2 1 4 4 C 1.53093 * 109.26074 * 177.60610 * 3 2 1 5 5 O 1.43015 * 109.25794 * 56.84395 * 4 3 2 6 6 C 1.43015 * 113.73896 * 301.32923 * 5 4 3 7 7 C 1.47016 * 111.00200 * 236.35535 * 2 1 3 8 8 H 1.09002 * 109.50143 * 62.46499 * 7 2 1 9 9 C 1.52997 * 109.50692 * 302.33138 * 7 2 1 10 10 C 1.52996 * 109.47438 * 297.25000 * 9 7 2 11 11 H 1.08997 * 109.47141 * 305.45891 * 10 9 7 12 12 N 1.46904 * 109.46862 * 65.45783 * 10 9 7 13 13 C 1.52998 * 109.47457 * 185.45586 * 10 9 7 14 14 C 1.50694 * 109.47208 * 175.00184 * 13 10 9 15 15 H 1.07994 * 120.00015 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99935 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00203 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00070 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47257 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47176 * 119.99842 * 18 16 14 21 21 H 1.48497 * 109.47312 * 239.99839 * 18 16 14 22 22 H 1.09004 * 109.46270 * 66.71260 * 1 2 3 23 23 H 1.08992 * 109.47088 * 306.71116 * 1 2 3 24 24 H 1.08997 * 109.47244 * 186.70713 * 1 2 3 25 25 H 1.09002 * 109.49927 * 297.54012 * 3 2 1 26 26 H 1.09001 * 109.50800 * 57.66704 * 3 2 1 27 27 H 1.08995 * 109.50625 * 176.77969 * 4 3 2 28 28 H 1.09001 * 109.50760 * 296.91102 * 4 3 2 29 29 H 1.09007 * 109.50376 * 178.60730 * 6 5 4 30 30 H 1.09000 * 109.50862 * 298.73569 * 6 5 4 31 31 H 1.08996 * 109.46958 * 57.25472 * 9 7 2 32 32 H 1.09002 * 109.46713 * 177.25312 * 9 7 2 33 33 H 1.00892 * 111.00075 * 59.99967 * 12 10 9 34 34 H 1.00898 * 110.99874 * 183.95524 * 12 10 9 35 35 H 1.09005 * 109.47258 * 295.00613 * 13 10 9 36 36 H 1.09000 * 109.46703 * 55.00229 * 13 10 9 37 37 H 0.96996 * 120.00447 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3724 0.0000 4 6 3.5250 1.3263 0.0604 5 8 4.0175 0.5572 -1.0402 6 6 3.5250 -0.7851 -1.0707 7 6 1.9959 -0.7604 -1.1426 8 1 1.6829 -0.2845 -2.0719 9 6 1.4590 -2.1923 -1.0946 10 6 1.9583 -2.8820 0.1765 11 1 3.0454 -2.8170 0.2221 12 7 1.3784 -2.2200 1.3528 13 6 1.5356 -4.3523 0.1587 14 6 2.1306 -5.0604 1.3484 15 1 2.7480 -4.5162 2.0476 16 6 1.8866 -6.4032 1.5444 17 7 1.1342 -7.0659 0.6933 18 14 2.6234 -7.2809 3.0195 19 1 3.4232 -6.3186 3.8194 20 1 1.5329 -7.8366 3.8604 21 1 3.4995 -8.3850 2.5518 22 1 -0.3632 0.4063 -0.9440 23 1 -0.3633 0.6143 0.8238 24 1 -0.3633 -1.0206 0.1200 25 1 1.6829 1.8824 -0.9111 26 1 1.6134 1.9092 0.8681 27 1 3.9222 2.3397 0.0029 28 1 3.8386 0.8643 0.9965 29 1 3.9223 -1.2987 -1.9462 30 1 3.8385 -1.3085 -0.1674 31 1 0.3692 -2.1717 -1.0928 32 1 1.8106 -2.7415 -1.9680 33 1 0.3708 -2.2667 1.3339 34 1 1.7428 -2.6154 2.2065 35 1 0.4485 -4.4184 0.2028 36 1 1.8913 -4.8214 -0.7586 37 1 0.9629 -8.0107 0.8309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260908304.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:41 Heat of formation + Delta-G solvation = -39.564418 kcal Electronic energy + Delta-G solvation = -16990.526490 eV Core-core repulsion = 14381.815730 eV Total energy + Delta-G solvation = -2608.710760 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.60149 -36.42525 -34.86457 -32.62367 -31.25591 -28.86717 -27.76199 -26.68234 -23.93172 -23.80352 -21.99188 -20.47694 -18.69487 -16.61932 -16.11121 -15.91508 -15.30081 -14.73736 -14.68643 -14.35081 -14.19700 -13.45876 -13.23270 -12.63604 -12.39530 -12.13586 -11.86313 -11.55801 -11.39219 -11.16842 -11.09070 -10.87549 -10.65842 -10.43859 -10.26584 -9.97208 -9.67200 -9.17918 -8.98854 -8.41625 -7.88889 -7.22256 -6.04096 -4.06977 3.28094 3.36272 3.40099 4.04351 4.16902 4.42494 5.06530 5.14904 5.22870 5.31274 5.35615 5.45412 5.58910 5.71182 5.76154 5.78049 5.80839 5.95329 6.01565 6.08620 6.15337 6.28845 6.35890 6.58638 6.84751 6.96720 7.31436 7.40558 7.45792 7.55815 7.68629 7.92707 8.34739 8.36281 8.58433 9.01082 9.57983 11.06967 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.040094 B = 0.006458 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.185858 B = 4334.621521 C = 4468.385338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.490 5.490 3 C 0.017 3.983 4 C 0.066 3.934 5 O -0.394 6.394 6 C 0.065 3.935 7 C 0.063 3.937 8 H 0.031 0.969 9 C -0.109 4.109 10 C 0.100 3.900 11 H 0.065 0.935 12 N -0.812 5.812 13 C -0.010 4.010 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.008 0.992 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.028 0.972 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.319 0.681 34 H 0.332 0.668 35 H 0.012 0.988 36 H 0.014 0.986 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 14.421 -2.054 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.215 5.215 3 C -0.111 4.111 4 C -0.011 4.011 5 O -0.313 6.313 6 C -0.011 4.011 7 C -0.046 4.046 8 H 0.049 0.951 9 C -0.147 4.147 10 C -0.012 4.012 11 H 0.083 0.917 12 N -0.339 5.339 13 C -0.049 4.049 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.026 0.974 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.046 0.954 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.145 0.855 35 H 0.030 0.970 36 H 0.032 0.968 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.143 14.758 -2.079 14.948 hybrid contribution -0.646 -1.394 0.386 1.584 sum 0.497 13.364 -1.693 13.480 Atomic orbital electron populations 1.22323 0.87731 1.02655 0.98550 1.62159 1.07274 1.10337 1.41716 1.22783 0.96486 0.91390 1.00466 1.22577 0.92518 0.95632 0.90359 1.87908 1.70189 1.24629 1.48524 1.22857 0.92319 0.82989 1.02947 1.22178 0.95772 0.95646 0.91022 0.95125 1.21756 1.00522 0.93042 0.99360 1.21404 0.98235 0.92776 0.88781 0.91656 1.59317 1.09724 1.60565 1.04303 1.19890 0.96513 0.91223 0.97264 1.21230 1.30719 0.94315 1.09374 0.92557 1.25028 0.95216 0.97771 0.96397 1.69975 1.38143 1.09009 1.36262 0.86563 0.78979 0.79737 0.82879 1.19687 1.21134 1.21090 0.97373 0.92116 0.90415 0.95432 0.90266 0.89444 0.92119 0.89168 0.90876 0.92127 0.91724 0.87013 0.85546 0.97008 0.96805 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 8.48 60.07 0.51 0.98 16 2 N -0.49 -7.10 3.20 -234.58 -0.75 -7.85 16 3 C 0.02 0.22 5.66 -3.71 -0.02 0.20 16 4 C 0.07 0.85 7.01 37.21 0.26 1.11 16 5 O -0.39 -6.04 10.83 -35.23 -0.38 -6.42 16 6 C 0.07 1.00 5.97 37.21 0.22 1.23 16 7 C 0.06 0.96 2.28 -67.60 -0.15 0.80 16 8 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 9 C -0.11 -1.82 4.47 -26.73 -0.12 -1.94 16 10 C 0.10 1.95 2.49 -67.71 -0.17 1.78 16 11 H 0.07 1.34 6.01 -51.93 -0.31 1.03 16 12 N -0.81 -14.69 6.80 -4.67 -0.03 -14.72 16 13 C -0.01 -0.26 4.62 -27.89 -0.13 -0.38 16 14 C -0.52 -14.07 8.55 -34.44 -0.29 -14.37 16 15 H 0.06 1.49 7.14 -52.49 -0.37 1.12 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 23 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 24 H 0.08 1.10 4.61 -51.93 -0.24 0.86 16 25 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 30 H 0.07 1.23 6.09 -51.93 -0.32 0.91 16 31 H 0.06 1.01 6.29 -51.93 -0.33 0.69 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.32 5.66 7.32 -39.30 -0.29 5.37 16 34 H 0.33 6.46 7.90 -39.29 -0.31 6.15 16 35 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 283.11 15.07 4.27 4.27 Total: -1.00 -29.28 283.11 -7.12 -36.40 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.95 Total: 6.85 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 0.01 Total: -9.08 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.05 Total: -48.45 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.38 Total: -6.42 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.28 -7.12 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908304.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.163 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds