Wall clock time and date at job start Mon Mar 30 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47013 * 111.00367 * 2 1 4 4 C 1.53093 * 109.26074 * 177.60610 * 3 2 1 5 5 O 1.43015 * 109.25794 * 56.84395 * 4 3 2 6 6 C 1.43015 * 113.73896 * 301.32923 * 5 4 3 7 7 C 1.47016 * 111.00200 * 236.35535 * 2 1 3 8 8 H 1.09002 * 109.50143 * 62.46499 * 7 2 1 9 9 C 1.52997 * 109.50692 * 302.33138 * 7 2 1 10 10 C 1.52996 * 109.47438 * 297.25000 * 9 7 2 11 11 H 1.08997 * 109.47141 * 305.45891 * 10 9 7 12 12 N 1.46904 * 109.46862 * 65.45783 * 10 9 7 13 13 C 1.52998 * 109.47457 * 185.45586 * 10 9 7 14 14 C 1.50694 * 109.47208 * 175.00184 * 13 10 9 15 15 H 1.07994 * 120.00015 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99935 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00203 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00070 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47257 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47176 * 119.99842 * 18 16 14 21 21 H 1.48497 * 109.47312 * 239.99839 * 18 16 14 22 22 H 1.09004 * 109.46270 * 66.71260 * 1 2 3 23 23 H 1.08992 * 109.47088 * 306.71116 * 1 2 3 24 24 H 1.08997 * 109.47244 * 186.70713 * 1 2 3 25 25 H 1.09002 * 109.49927 * 297.54012 * 3 2 1 26 26 H 1.09001 * 109.50800 * 57.66704 * 3 2 1 27 27 H 1.08995 * 109.50625 * 176.77969 * 4 3 2 28 28 H 1.09001 * 109.50760 * 296.91102 * 4 3 2 29 29 H 1.09007 * 109.50376 * 178.60730 * 6 5 4 30 30 H 1.09000 * 109.50862 * 298.73569 * 6 5 4 31 31 H 1.08996 * 109.46958 * 57.25472 * 9 7 2 32 32 H 1.09002 * 109.46713 * 177.25312 * 9 7 2 33 33 H 1.00892 * 111.00075 * 59.99967 * 12 10 9 34 34 H 1.00898 * 110.99874 * 183.95524 * 12 10 9 35 35 H 1.09005 * 109.47258 * 295.00613 * 13 10 9 36 36 H 1.09000 * 109.46703 * 55.00229 * 13 10 9 37 37 H 0.96996 * 120.00447 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3724 0.0000 4 6 3.5250 1.3263 0.0604 5 8 4.0175 0.5572 -1.0402 6 6 3.5250 -0.7851 -1.0707 7 6 1.9959 -0.7604 -1.1426 8 1 1.6829 -0.2845 -2.0719 9 6 1.4590 -2.1923 -1.0946 10 6 1.9583 -2.8820 0.1765 11 1 3.0454 -2.8170 0.2221 12 7 1.3784 -2.2200 1.3528 13 6 1.5356 -4.3523 0.1587 14 6 2.1306 -5.0604 1.3484 15 1 2.7480 -4.5162 2.0476 16 6 1.8866 -6.4032 1.5444 17 7 1.1342 -7.0659 0.6933 18 14 2.6234 -7.2809 3.0195 19 1 3.4232 -6.3186 3.8194 20 1 1.5329 -7.8366 3.8604 21 1 3.4995 -8.3850 2.5518 22 1 -0.3632 0.4063 -0.9440 23 1 -0.3633 0.6143 0.8238 24 1 -0.3633 -1.0206 0.1200 25 1 1.6829 1.8824 -0.9111 26 1 1.6134 1.9092 0.8681 27 1 3.9222 2.3397 0.0029 28 1 3.8386 0.8643 0.9965 29 1 3.9223 -1.2987 -1.9462 30 1 3.8385 -1.3085 -0.1674 31 1 0.3692 -2.1717 -1.0928 32 1 1.8106 -2.7415 -1.9680 33 1 0.3708 -2.2667 1.3339 34 1 1.7428 -2.6154 2.2065 35 1 0.4485 -4.4184 0.2028 36 1 1.8913 -4.8214 -0.7586 37 1 0.9629 -8.0107 0.8309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260908304.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:40 Heat of formation + Delta-G solvation = -60.516904 kcal Electronic energy + Delta-G solvation = -16991.435058 eV Core-core repulsion = 14381.815730 eV Total energy + Delta-G solvation = -2609.619328 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77949 -37.85470 -36.22366 -34.55748 -32.63575 -30.08431 -29.53056 -28.08126 -25.62919 -24.94066 -23.36567 -21.97315 -20.06253 -18.55102 -17.46876 -17.06104 -16.72719 -16.41828 -15.92505 -15.65703 -15.56563 -14.85717 -14.53137 -14.25292 -14.09587 -13.61384 -13.16011 -13.04297 -12.94828 -12.64049 -12.50717 -12.46889 -12.23172 -12.00079 -11.66524 -11.43076 -11.38578 -10.93872 -10.59777 -10.35987 -9.13196 -8.71329 -8.19760 -6.30024 1.38265 1.39936 1.52079 2.39971 2.94416 3.08899 3.13787 3.82928 4.01423 4.10172 4.18682 4.27864 4.38219 4.50872 4.57216 4.60639 4.72462 4.78384 4.80146 4.91235 4.98616 5.04895 5.11763 5.18134 5.23257 5.27148 5.44552 5.71171 5.81425 6.19674 6.23033 6.31475 6.36325 6.73024 6.88114 7.00015 7.39642 8.91658 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.040094 B = 0.006458 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.185858 B = 4334.621521 C = 4468.385338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.505 5.505 3 C 0.020 3.980 4 C 0.062 3.938 5 O -0.405 6.405 6 C 0.068 3.932 7 C 0.071 3.929 8 H 0.035 0.965 9 C -0.102 4.102 10 C 0.117 3.883 11 H 0.059 0.941 12 N -0.794 5.794 13 C -0.003 4.003 14 C -0.528 4.528 15 H 0.062 0.938 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.961 3.039 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.283 1.283 22 H 0.014 0.986 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.031 0.969 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.323 0.677 34 H 0.326 0.674 35 H -0.013 1.013 36 H -0.016 1.016 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 15.847 -1.203 15.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.230 5.230 3 C -0.109 4.109 4 C -0.015 4.015 5 O -0.324 6.324 6 C -0.009 4.009 7 C -0.038 4.038 8 H 0.053 0.947 9 C -0.140 4.140 10 C 0.004 3.996 11 H 0.077 0.923 12 N -0.320 5.320 13 C -0.042 4.042 14 C -0.566 4.566 15 H 0.080 0.920 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.786 3.214 19 H -0.185 1.185 20 H -0.207 1.207 21 H -0.209 1.209 22 H 0.033 0.967 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.115 0.885 27 H 0.133 0.867 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.005 0.995 36 H 0.002 0.998 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.533 16.212 -1.221 16.330 hybrid contribution -0.785 -1.798 0.114 1.965 sum 0.749 14.414 -1.108 14.476 Atomic orbital electron populations 1.22302 0.87051 1.02187 0.99502 1.62141 1.08010 1.11600 1.41250 1.22828 0.96234 0.90372 1.01436 1.22787 0.92836 0.96580 0.89296 1.87898 1.70543 1.24445 1.49512 1.22783 0.92379 0.83288 1.02449 1.22021 0.95642 0.94439 0.91710 0.94674 1.21639 1.00569 0.94133 0.97645 1.21158 0.97854 0.89798 0.90754 0.92341 1.59331 1.09940 1.59364 1.03377 1.19854 0.94616 0.94525 0.95208 1.21618 1.30338 0.94728 1.09909 0.91987 1.25926 0.95690 0.98837 0.99330 1.70107 1.39723 1.09379 1.38321 0.85461 0.78184 0.78469 0.79287 1.18475 1.20734 1.20899 0.96731 0.90661 0.91738 0.95093 0.88461 0.86689 0.92901 0.88476 0.92607 0.92007 0.91877 0.86534 0.86248 0.99460 0.99776 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 8.48 127.69 1.08 2.01 16 2 N -0.51 -13.64 3.20 -896.07 -2.87 -16.51 16 3 C 0.02 0.44 5.66 86.31 0.49 0.93 16 4 C 0.06 1.43 7.01 72.01 0.50 1.94 16 5 O -0.41 -11.70 10.83 -148.98 -1.61 -13.31 16 6 C 0.07 2.01 5.97 72.01 0.43 2.44 16 7 C 0.07 2.07 2.28 44.92 0.10 2.17 16 8 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 9 C -0.10 -3.38 4.47 30.59 0.14 -3.24 16 10 C 0.12 4.56 2.49 44.91 0.11 4.67 16 11 H 0.06 2.40 6.01 -2.39 -0.01 2.39 16 12 N -0.79 -28.14 6.80 -168.68 -1.15 -29.29 16 13 C 0.00 -0.16 4.62 29.85 0.14 -0.03 16 14 C -0.53 -28.84 8.55 25.60 0.22 -28.62 16 15 H 0.06 3.26 7.14 -2.91 -0.02 3.24 16 16 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 17 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 18 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 19 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 23 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 24 H 0.06 1.74 4.61 -2.39 -0.01 1.73 16 25 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.10 1.87 8.12 -2.39 -0.02 1.85 16 27 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 30 H 0.06 1.84 6.09 -2.39 -0.01 1.83 16 31 H 0.06 2.04 6.29 -2.39 -0.02 2.02 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.32 11.24 7.32 -89.70 -0.66 10.58 16 34 H 0.33 12.39 7.90 -89.70 -0.71 11.68 16 35 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 36 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -61.96 283.11 0.05 -61.91 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -0.30 Total: 24.70 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 3.68 Total: -17.29 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -3.73 Total: -102.02 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -1.61 Total: -13.31 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -61.96 0.05 -61.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908304.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.396 kcal (2) G-P(sol) polarization free energy of solvation -61.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds