Wall clock time and date at job start Mon Mar 30 2020 02:54:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.47013 * 111.00367 * 2 1
4 4 C 1.53093 * 109.26074 * 177.60610 * 3 2 1
5 5 O 1.43015 * 109.25794 * 56.84395 * 4 3 2
6 6 C 1.43015 * 113.73896 * 301.32923 * 5 4 3
7 7 C 1.47016 * 111.00200 * 236.35535 * 2 1 3
8 8 H 1.09002 * 109.50143 * 62.46499 * 7 2 1
9 9 C 1.52997 * 109.50692 * 302.33138 * 7 2 1
10 10 C 1.52996 * 109.47438 * 297.25000 * 9 7 2
11 11 H 1.08997 * 109.47141 * 305.45891 * 10 9 7
12 12 N 1.46904 * 109.46862 * 65.45783 * 10 9 7
13 13 C 1.52998 * 109.47457 * 185.45586 * 10 9 7
14 14 C 1.50694 * 109.47208 * 175.00184 * 13 10 9
15 15 H 1.07994 * 120.00015 * 0.02562 * 14 13 10
16 16 C 1.37879 * 119.99935 * 180.02562 * 14 13 10
17 17 N 1.31511 * 120.00203 * 359.97438 * 16 14 13
18 18 Si 1.86794 * 120.00070 * 180.02562 * 16 14 13
19 19 H 1.48506 * 109.47257 * 0.02562 * 18 16 14
20 20 H 1.48500 * 109.47176 * 119.99842 * 18 16 14
21 21 H 1.48497 * 109.47312 * 239.99839 * 18 16 14
22 22 H 1.09004 * 109.46270 * 66.71260 * 1 2 3
23 23 H 1.08992 * 109.47088 * 306.71116 * 1 2 3
24 24 H 1.08997 * 109.47244 * 186.70713 * 1 2 3
25 25 H 1.09002 * 109.49927 * 297.54012 * 3 2 1
26 26 H 1.09001 * 109.50800 * 57.66704 * 3 2 1
27 27 H 1.08995 * 109.50625 * 176.77969 * 4 3 2
28 28 H 1.09001 * 109.50760 * 296.91102 * 4 3 2
29 29 H 1.09007 * 109.50376 * 178.60730 * 6 5 4
30 30 H 1.09000 * 109.50862 * 298.73569 * 6 5 4
31 31 H 1.08996 * 109.46958 * 57.25472 * 9 7 2
32 32 H 1.09002 * 109.46713 * 177.25312 * 9 7 2
33 33 H 1.00892 * 111.00075 * 59.99967 * 12 10 9
34 34 H 1.00898 * 110.99874 * 183.95524 * 12 10 9
35 35 H 1.09005 * 109.47258 * 295.00613 * 13 10 9
36 36 H 1.09000 * 109.46703 * 55.00229 * 13 10 9
37 37 H 0.96996 * 120.00447 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9960 1.3724 0.0000
4 6 3.5250 1.3263 0.0604
5 8 4.0175 0.5572 -1.0402
6 6 3.5250 -0.7851 -1.0707
7 6 1.9959 -0.7604 -1.1426
8 1 1.6829 -0.2845 -2.0719
9 6 1.4590 -2.1923 -1.0946
10 6 1.9583 -2.8820 0.1765
11 1 3.0454 -2.8170 0.2221
12 7 1.3784 -2.2200 1.3528
13 6 1.5356 -4.3523 0.1587
14 6 2.1306 -5.0604 1.3484
15 1 2.7480 -4.5162 2.0476
16 6 1.8866 -6.4032 1.5444
17 7 1.1342 -7.0659 0.6933
18 14 2.6234 -7.2809 3.0195
19 1 3.4232 -6.3186 3.8194
20 1 1.5329 -7.8366 3.8604
21 1 3.4995 -8.3850 2.5518
22 1 -0.3632 0.4063 -0.9440
23 1 -0.3633 0.6143 0.8238
24 1 -0.3633 -1.0206 0.1200
25 1 1.6829 1.8824 -0.9111
26 1 1.6134 1.9092 0.8681
27 1 3.9222 2.3397 0.0029
28 1 3.8386 0.8643 0.9965
29 1 3.9223 -1.2987 -1.9462
30 1 3.8385 -1.3085 -0.1674
31 1 0.3692 -2.1717 -1.0928
32 1 1.8106 -2.7415 -1.9680
33 1 0.3708 -2.2667 1.3339
34 1 1.7428 -2.6154 2.2065
35 1 0.4485 -4.4184 0.2028
36 1 1.8913 -4.8214 -0.7586
37 1 0.9629 -8.0107 0.8309
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260908304.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:54:40
Heat of formation + Delta-G solvation = -60.516904 kcal
Electronic energy + Delta-G solvation = -16991.435058 eV
Core-core repulsion = 14381.815730 eV
Total energy + Delta-G solvation = -2609.619328 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 228.158 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.77949 -37.85470 -36.22366 -34.55748 -32.63575 -30.08431 -29.53056 -28.08126
-25.62919 -24.94066 -23.36567 -21.97315 -20.06253 -18.55102 -17.46876 -17.06104
-16.72719 -16.41828 -15.92505 -15.65703 -15.56563 -14.85717 -14.53137 -14.25292
-14.09587 -13.61384 -13.16011 -13.04297 -12.94828 -12.64049 -12.50717 -12.46889
-12.23172 -12.00079 -11.66524 -11.43076 -11.38578 -10.93872 -10.59777 -10.35987
-9.13196 -8.71329 -8.19760 -6.30024 1.38265 1.39936 1.52079 2.39971
2.94416 3.08899 3.13787 3.82928 4.01423 4.10172 4.18682 4.27864
4.38219 4.50872 4.57216 4.60639 4.72462 4.78384 4.80146 4.91235
4.98616 5.04895 5.11763 5.18134 5.23257 5.27148 5.44552 5.71171
5.81425 6.19674 6.23033 6.31475 6.36325 6.73024 6.88114 7.00015
7.39642 8.91658
Molecular weight = 228.16amu
Principal moments of inertia in cm(-1)
A = 0.040094 B = 0.006458 C = 0.006265
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 698.185858 B = 4334.621521 C = 4468.385338
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 N -0.505 5.505
3 C 0.020 3.980
4 C 0.062 3.938
5 O -0.405 6.405
6 C 0.068 3.932
7 C 0.071 3.929
8 H 0.035 0.965
9 C -0.102 4.102
10 C 0.117 3.883
11 H 0.059 0.941
12 N -0.794 5.794
13 C -0.003 4.003
14 C -0.528 4.528
15 H 0.062 0.938
16 C 0.000 4.000
17 N -0.934 5.934
18 Si 0.961 3.039
19 H -0.261 1.261
20 H -0.281 1.281
21 H -0.283 1.283
22 H 0.014 0.986
23 H 0.075 0.925
24 H 0.064 0.936
25 H 0.031 0.969
26 H 0.097 0.903
27 H 0.115 0.885
28 H 0.053 0.947
29 H 0.097 0.903
30 H 0.056 0.944
31 H 0.061 0.939
32 H 0.063 0.937
33 H 0.323 0.677
34 H 0.326 0.674
35 H -0.013 1.013
36 H -0.016 1.016
37 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.958 15.847 -1.203 15.921
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 N -0.230 5.230
3 C -0.109 4.109
4 C -0.015 4.015
5 O -0.324 6.324
6 C -0.009 4.009
7 C -0.038 4.038
8 H 0.053 0.947
9 C -0.140 4.140
10 C 0.004 3.996
11 H 0.077 0.923
12 N -0.320 5.320
13 C -0.042 4.042
14 C -0.566 4.566
15 H 0.080 0.920
16 C -0.198 4.198
17 N -0.575 5.575
18 Si 0.786 3.214
19 H -0.185 1.185
20 H -0.207 1.207
21 H -0.209 1.209
22 H 0.033 0.967
23 H 0.093 0.907
24 H 0.083 0.917
25 H 0.049 0.951
26 H 0.115 0.885
27 H 0.133 0.867
28 H 0.071 0.929
29 H 0.115 0.885
30 H 0.074 0.926
31 H 0.080 0.920
32 H 0.081 0.919
33 H 0.135 0.865
34 H 0.138 0.862
35 H 0.005 0.995
36 H 0.002 0.998
37 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 1.533 16.212 -1.221 16.330
hybrid contribution -0.785 -1.798 0.114 1.965
sum 0.749 14.414 -1.108 14.476
Atomic orbital electron populations
1.22302 0.87051 1.02187 0.99502 1.62141 1.08010 1.11600 1.41250
1.22828 0.96234 0.90372 1.01436 1.22787 0.92836 0.96580 0.89296
1.87898 1.70543 1.24445 1.49512 1.22783 0.92379 0.83288 1.02449
1.22021 0.95642 0.94439 0.91710 0.94674 1.21639 1.00569 0.94133
0.97645 1.21158 0.97854 0.89798 0.90754 0.92341 1.59331 1.09940
1.59364 1.03377 1.19854 0.94616 0.94525 0.95208 1.21618 1.30338
0.94728 1.09909 0.91987 1.25926 0.95690 0.98837 0.99330 1.70107
1.39723 1.09379 1.38321 0.85461 0.78184 0.78469 0.79287 1.18475
1.20734 1.20899 0.96731 0.90661 0.91738 0.95093 0.88461 0.86689
0.92901 0.88476 0.92607 0.92007 0.91877 0.86534 0.86248 0.99460
0.99776 0.93032
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.92 8.48 127.69 1.08 2.01 16
2 N -0.51 -13.64 3.20 -896.07 -2.87 -16.51 16
3 C 0.02 0.44 5.66 86.31 0.49 0.93 16
4 C 0.06 1.43 7.01 72.01 0.50 1.94 16
5 O -0.41 -11.70 10.83 -148.98 -1.61 -13.31 16
6 C 0.07 2.01 5.97 72.01 0.43 2.44 16
7 C 0.07 2.07 2.28 44.92 0.10 2.17 16
8 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16
9 C -0.10 -3.38 4.47 30.59 0.14 -3.24 16
10 C 0.12 4.56 2.49 44.91 0.11 4.67 16
11 H 0.06 2.40 6.01 -2.39 -0.01 2.39 16
12 N -0.79 -28.14 6.80 -168.68 -1.15 -29.29 16
13 C 0.00 -0.16 4.62 29.85 0.14 -0.03 16
14 C -0.53 -28.84 8.55 25.60 0.22 -28.62 16
15 H 0.06 3.26 7.14 -2.91 -0.02 3.24 16
16 C 0.00 -0.02 5.46 84.66 0.46 0.44 16
17 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16
18 Si 0.96 43.99 29.54 68.60 2.03 46.02 16
19 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16
20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16
22 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16
23 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16
24 H 0.06 1.74 4.61 -2.39 -0.01 1.73 16
25 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16
26 H 0.10 1.87 8.12 -2.39 -0.02 1.85 16
27 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16
28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16
29 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16
30 H 0.06 1.84 6.09 -2.39 -0.01 1.83 16
31 H 0.06 2.04 6.29 -2.39 -0.02 2.02 16
32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
33 H 0.32 11.24 7.32 -89.70 -0.66 10.58 16
34 H 0.33 12.39 7.90 -89.70 -0.71 11.68 16
35 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16
36 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16
37 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16
Total: -1.00 -61.96 283.11 0.05 -61.91
By element:
Atomic # 1 Polarization: 25.00 SS G_CDS: -0.30 Total: 24.70 kcal
Atomic # 6 Polarization: -20.97 SS G_CDS: 3.68 Total: -17.29 kcal
Atomic # 7 Polarization: -98.29 SS G_CDS: -3.73 Total: -102.02 kcal
Atomic # 8 Polarization: -11.70 SS G_CDS: -1.61 Total: -13.31 kcal
Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal
Total: -61.96 0.05 -61.91 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260908304.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.396 kcal
(2) G-P(sol) polarization free energy of solvation -61.965 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.568 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.913 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.517 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds