Wall clock time and date at job start Mon Mar 30 2020 02:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47017 * 110.99848 * 2 1 4 4 C 1.53095 * 109.25750 * 182.39399 * 3 2 1 5 5 O 1.43015 * 109.26001 * 303.15085 * 4 3 2 6 6 C 1.43014 * 113.73734 * 58.66803 * 5 4 3 7 7 C 1.47017 * 111.00238 * 123.63161 * 2 1 3 8 8 H 1.08995 * 109.50816 * 297.54636 * 7 2 1 9 9 C 1.52997 * 109.50229 * 57.63120 * 7 2 1 10 10 C 1.53001 * 109.47428 * 66.30816 * 9 7 2 11 11 H 1.09004 * 109.46874 * 54.17961 * 10 9 7 12 12 N 1.46899 * 109.46884 * 294.18261 * 10 9 7 13 13 C 1.53001 * 109.47485 * 174.17967 * 10 9 7 14 14 C 1.50692 * 109.47353 * 184.99897 * 13 10 9 15 15 H 1.08006 * 120.00016 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00345 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99474 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00151 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47236 * 60.00443 * 18 16 14 20 20 H 1.48506 * 109.47075 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47457 * 300.00082 * 18 16 14 22 22 H 1.09004 * 109.46916 * 290.08520 * 1 2 3 23 23 H 1.08999 * 109.47287 * 50.08636 * 1 2 3 24 24 H 1.08999 * 109.46858 * 170.08950 * 1 2 3 25 25 H 1.09006 * 109.50305 * 302.32892 * 3 2 1 26 26 H 1.09000 * 109.50754 * 62.45981 * 3 2 1 27 27 H 1.09003 * 109.50828 * 183.21445 * 4 3 2 28 28 H 1.09001 * 109.54306 * 63.10664 * 4 3 2 29 29 H 1.09005 * 109.50604 * 181.39585 * 6 5 4 30 30 H 1.09002 * 109.50745 * 61.27022 * 6 5 4 31 31 H 1.09006 * 109.46876 * 186.30780 * 9 7 2 32 32 H 1.09001 * 109.47537 * 306.30362 * 9 7 2 33 33 H 1.00907 * 111.00201 * 299.99177 * 12 10 9 34 34 H 1.00897 * 111.00509 * 63.94804 * 12 10 9 35 35 H 1.09001 * 109.46940 * 305.00461 * 13 10 9 36 36 H 1.09003 * 109.46941 * 64.99547 * 13 10 9 37 37 H 0.97002 * 119.99210 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 -0.0604 5 8 4.0175 0.5575 1.0402 6 6 3.5250 -0.7848 1.0709 7 6 1.9959 -0.7602 1.1428 8 1 1.6828 -0.2842 2.0720 9 6 1.4582 -2.1917 1.0955 10 6 2.0279 -2.9105 -0.1291 11 1 3.1158 -2.8430 -0.1165 12 7 1.5122 -2.2793 -1.3512 13 6 1.6079 -4.3814 -0.0985 14 6 2.2687 -5.1163 -1.2361 15 1 2.9232 -4.5873 -1.9130 16 6 2.0386 -6.4643 -1.4122 17 7 1.2420 -7.1086 -0.5876 18 14 2.8571 -7.3751 -2.8228 19 1 4.3326 -7.2781 -2.6848 20 1 2.4495 -8.8028 -2.7930 21 1 2.4397 -6.7685 -4.1123 22 1 -0.3633 0.3529 0.9652 23 1 -0.3634 0.6594 -0.7882 24 1 -0.3633 -1.0123 -0.1769 25 1 1.6133 1.9092 -0.8682 26 1 1.6828 1.8826 0.9110 27 1 3.9222 2.3399 -0.0030 28 1 3.8391 0.8648 -0.9965 29 1 3.9223 -1.2984 1.9464 30 1 3.8386 -1.3083 0.1677 31 1 1.7570 -2.7221 1.9998 32 1 0.3704 -2.1694 1.0303 33 1 0.5050 -2.3289 -1.3865 34 1 1.8300 -1.3246 -1.4269 35 1 1.9135 -4.8269 0.8482 36 1 0.5249 -4.4522 -0.2004 37 1 1.0804 -8.0570 -0.7113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260908307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:42 Heat of formation + Delta-G solvation = -37.356919 kcal Electronic energy + Delta-G solvation = -17012.139066 eV Core-core repulsion = 14403.524031 eV Total energy + Delta-G solvation = -2608.615035 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.00613 -36.62695 -34.95032 -32.54928 -31.20403 -29.14494 -27.99411 -26.69276 -24.19264 -23.88111 -22.11544 -20.52485 -18.91301 -16.55491 -16.27095 -15.96970 -15.49289 -15.17420 -14.87624 -14.31874 -14.24832 -13.79673 -13.24710 -12.89090 -12.45177 -12.33961 -11.97725 -11.85357 -11.45250 -11.20707 -11.11309 -10.91889 -10.54726 -10.50521 -10.39517 -10.04705 -9.46196 -9.06923 -8.94300 -8.50818 -8.20232 -7.32190 -5.83160 -3.80354 3.45289 3.48256 3.52756 3.71818 3.89544 4.61184 4.80014 4.88154 4.95233 5.11742 5.23555 5.38645 5.43798 5.46986 5.52316 5.54734 5.68271 5.76653 5.80105 5.91847 5.97782 6.06149 6.21887 6.38441 6.73221 6.88697 6.93979 7.07775 7.18462 7.70053 7.87746 8.15629 8.39104 8.65548 8.74558 9.26190 9.81146 11.28995 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.040282 B = 0.006453 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.931817 B = 4338.050066 C = 4494.396475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.529 5.529 3 C 0.017 3.983 4 C 0.062 3.938 5 O -0.389 6.389 6 C 0.061 3.939 7 C 0.051 3.949 8 H 0.042 0.958 9 C -0.154 4.154 10 C 0.103 3.897 11 H 0.066 0.934 12 N -0.830 5.830 13 C 0.028 3.972 14 C -0.487 4.487 15 H 0.060 0.940 16 C 0.048 3.952 17 N -0.906 5.906 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.278 1.278 22 H 0.025 0.975 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.321 0.679 34 H 0.341 0.659 35 H 0.014 0.986 36 H 0.011 0.989 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 16.786 2.981 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.255 5.255 3 C -0.112 4.112 4 C -0.015 4.015 5 O -0.308 6.308 6 C -0.015 4.015 7 C -0.058 4.058 8 H 0.060 0.940 9 C -0.194 4.194 10 C -0.009 4.009 11 H 0.084 0.916 12 N -0.363 5.363 13 C -0.009 4.009 14 C -0.526 4.526 15 H 0.078 0.922 16 C -0.151 4.151 17 N -0.548 5.548 18 Si 0.720 3.280 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.204 1.204 22 H 0.043 0.957 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.032 0.968 36 H 0.030 0.970 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.991 15.911 2.316 16.109 hybrid contribution -0.753 0.349 0.548 0.995 sum 0.238 16.260 2.864 16.512 Atomic orbital electron populations 1.22521 0.87057 1.03317 1.00122 1.62198 1.08214 1.12643 1.42485 1.22816 0.96714 0.90249 1.01376 1.22642 0.92091 0.96256 0.90525 1.87951 1.70030 1.24476 1.48336 1.22939 0.91815 0.83127 1.03638 1.22413 0.96183 0.95878 0.91282 0.94006 1.22663 1.00968 0.92949 1.02800 1.21566 0.98175 0.96102 0.85029 0.91613 1.58952 1.14093 1.23965 1.39295 1.19150 0.96521 0.88311 0.96898 1.21158 1.26730 0.92877 1.11818 0.92157 1.25028 0.95789 0.97908 0.96383 1.69964 1.37886 1.09184 1.37726 0.86672 0.79716 0.78395 0.83217 1.20532 1.21724 1.20407 0.95668 0.91342 0.90190 0.89703 0.94316 0.88842 0.91997 0.88418 0.90726 0.91328 0.91887 0.86674 0.84062 0.96814 0.97040 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.57 60.07 0.51 0.72 16 2 N -0.53 -6.70 1.95 -234.57 -0.46 -7.16 16 3 C 0.02 0.18 5.65 -3.71 -0.02 0.16 16 4 C 0.06 0.69 7.01 37.21 0.26 0.96 16 5 O -0.39 -5.45 10.83 -35.23 -0.38 -5.84 16 6 C 0.06 0.88 5.87 37.21 0.22 1.09 16 7 C 0.05 0.71 2.25 -67.60 -0.15 0.56 16 8 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 9 C -0.15 -2.51 4.52 -26.73 -0.12 -2.63 16 10 C 0.10 2.07 2.40 -67.71 -0.16 1.91 16 11 H 0.07 1.37 5.93 -51.93 -0.31 1.06 16 12 N -0.83 -15.88 8.25 -4.67 -0.04 -15.92 16 13 C 0.03 0.73 4.62 -27.89 -0.13 0.60 16 14 C -0.49 -14.03 8.84 -34.44 -0.30 -14.33 16 15 H 0.06 1.74 7.74 -52.48 -0.41 1.34 16 16 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 17 N -0.91 -27.84 13.29 55.43 0.74 -27.11 16 18 Si 0.89 22.56 29.54 -169.99 -5.02 17.54 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 23 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 24 H 0.08 1.02 4.95 -51.93 -0.26 0.76 16 25 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.18 6.03 -51.93 -0.31 0.86 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.02 6.17 -51.93 -0.32 0.70 16 33 H 0.32 6.01 7.58 -39.29 -0.30 5.71 16 34 H 0.34 5.81 6.10 -39.29 -0.24 5.57 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 282.56 15.07 4.26 4.26 Total: -1.00 -31.16 282.56 -6.82 -37.98 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.92 Total: 5.90 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 0.01 Total: -9.65 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.24 Total: -50.18 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.38 Total: -5.84 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.16 -6.82 -37.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.622 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds