Wall clock time and date at job start Mon Mar 30 2020 02:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47017 * 110.99848 * 2 1 4 4 C 1.53095 * 109.25750 * 182.39399 * 3 2 1 5 5 O 1.43015 * 109.26001 * 303.15085 * 4 3 2 6 6 C 1.43014 * 113.73734 * 58.66803 * 5 4 3 7 7 C 1.47017 * 111.00238 * 123.63161 * 2 1 3 8 8 H 1.08995 * 109.50816 * 297.54636 * 7 2 1 9 9 C 1.52997 * 109.50229 * 57.63120 * 7 2 1 10 10 C 1.53001 * 109.47428 * 66.30816 * 9 7 2 11 11 H 1.09004 * 109.46874 * 54.17961 * 10 9 7 12 12 N 1.46899 * 109.46884 * 294.18261 * 10 9 7 13 13 C 1.53001 * 109.47485 * 174.17967 * 10 9 7 14 14 C 1.50692 * 109.47353 * 184.99897 * 13 10 9 15 15 H 1.08006 * 120.00016 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00345 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99474 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00151 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47236 * 60.00443 * 18 16 14 20 20 H 1.48506 * 109.47075 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47457 * 300.00082 * 18 16 14 22 22 H 1.09004 * 109.46916 * 290.08520 * 1 2 3 23 23 H 1.08999 * 109.47287 * 50.08636 * 1 2 3 24 24 H 1.08999 * 109.46858 * 170.08950 * 1 2 3 25 25 H 1.09006 * 109.50305 * 302.32892 * 3 2 1 26 26 H 1.09000 * 109.50754 * 62.45981 * 3 2 1 27 27 H 1.09003 * 109.50828 * 183.21445 * 4 3 2 28 28 H 1.09001 * 109.54306 * 63.10664 * 4 3 2 29 29 H 1.09005 * 109.50604 * 181.39585 * 6 5 4 30 30 H 1.09002 * 109.50745 * 61.27022 * 6 5 4 31 31 H 1.09006 * 109.46876 * 186.30780 * 9 7 2 32 32 H 1.09001 * 109.47537 * 306.30362 * 9 7 2 33 33 H 1.00907 * 111.00201 * 299.99177 * 12 10 9 34 34 H 1.00897 * 111.00509 * 63.94804 * 12 10 9 35 35 H 1.09001 * 109.46940 * 305.00461 * 13 10 9 36 36 H 1.09003 * 109.46941 * 64.99547 * 13 10 9 37 37 H 0.97002 * 119.99210 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 -0.0604 5 8 4.0175 0.5575 1.0402 6 6 3.5250 -0.7848 1.0709 7 6 1.9959 -0.7602 1.1428 8 1 1.6828 -0.2842 2.0720 9 6 1.4582 -2.1917 1.0955 10 6 2.0279 -2.9105 -0.1291 11 1 3.1158 -2.8430 -0.1165 12 7 1.5122 -2.2793 -1.3512 13 6 1.6079 -4.3814 -0.0985 14 6 2.2687 -5.1163 -1.2361 15 1 2.9232 -4.5873 -1.9130 16 6 2.0386 -6.4643 -1.4122 17 7 1.2420 -7.1086 -0.5876 18 14 2.8571 -7.3751 -2.8228 19 1 4.3326 -7.2781 -2.6848 20 1 2.4495 -8.8028 -2.7930 21 1 2.4397 -6.7685 -4.1123 22 1 -0.3633 0.3529 0.9652 23 1 -0.3634 0.6594 -0.7882 24 1 -0.3633 -1.0123 -0.1769 25 1 1.6133 1.9092 -0.8682 26 1 1.6828 1.8826 0.9110 27 1 3.9222 2.3399 -0.0030 28 1 3.8391 0.8648 -0.9965 29 1 3.9223 -1.2984 1.9464 30 1 3.8386 -1.3083 0.1677 31 1 1.7570 -2.7221 1.9998 32 1 0.3704 -2.1694 1.0303 33 1 0.5050 -2.3289 -1.3865 34 1 1.8300 -1.3246 -1.4269 35 1 1.9135 -4.8269 0.8482 36 1 0.5249 -4.4522 -0.2004 37 1 1.0804 -8.0570 -0.7113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260908307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:42 Heat of formation + Delta-G solvation = -59.536990 kcal Electronic energy + Delta-G solvation = -17013.100866 eV Core-core repulsion = 14403.524031 eV Total energy + Delta-G solvation = -2609.576835 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.09076 -37.92572 -36.26588 -34.55559 -32.54648 -30.31166 -29.74158 -28.04790 -25.65775 -25.13921 -23.44158 -21.97284 -20.26770 -18.36261 -17.57430 -17.19263 -16.80890 -16.35179 -16.28431 -15.93230 -15.51724 -14.87377 -14.73678 -14.36527 -14.03965 -13.48586 -13.36263 -13.05532 -13.02688 -12.76630 -12.58566 -12.46750 -12.32483 -12.11780 -11.70333 -11.49733 -11.14685 -11.06431 -10.49435 -10.42981 -9.57970 -8.79758 -8.08812 -6.13920 1.42483 1.45804 1.53318 2.48764 2.74170 2.91985 3.24257 3.69320 3.91426 3.96966 4.06063 4.23584 4.29005 4.35319 4.48952 4.51186 4.59902 4.62969 4.69993 4.85099 4.86322 4.91414 4.97680 5.06193 5.17389 5.26008 5.52743 5.80150 5.90386 5.92039 5.99144 6.16050 6.41247 6.82595 7.01066 7.27779 7.52969 9.02871 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.040282 B = 0.006453 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.931817 B = 4338.050066 C = 4494.396475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.541 5.541 3 C 0.020 3.980 4 C 0.055 3.945 5 O -0.401 6.401 6 C 0.064 3.936 7 C 0.062 3.938 8 H 0.049 0.951 9 C -0.143 4.143 10 C 0.118 3.882 11 H 0.059 0.941 12 N -0.836 5.836 13 C 0.034 3.966 14 C -0.502 4.502 15 H 0.056 0.944 16 C -0.008 4.008 17 N -0.941 5.941 18 Si 0.959 3.041 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.272 1.272 22 H 0.031 0.969 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.043 0.957 27 H 0.121 0.879 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.324 0.676 34 H 0.354 0.646 35 H -0.011 1.011 36 H -0.014 1.014 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 18.367 2.239 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.267 5.267 3 C -0.108 4.108 4 C -0.021 4.021 5 O -0.320 6.320 6 C -0.013 4.013 7 C -0.047 4.047 8 H 0.067 0.933 9 C -0.183 4.183 10 C 0.006 3.994 11 H 0.077 0.923 12 N -0.372 5.372 13 C -0.004 4.004 14 C -0.541 4.541 15 H 0.075 0.925 16 C -0.204 4.204 17 N -0.583 5.583 18 Si 0.785 3.215 19 H -0.195 1.195 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.049 0.951 23 H 0.106 0.894 24 H 0.081 0.919 25 H 0.126 0.874 26 H 0.061 0.939 27 H 0.139 0.861 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.175 0.825 35 H 0.008 0.992 36 H 0.005 0.995 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.345 17.525 1.570 17.647 hybrid contribution -0.874 -0.100 0.773 1.171 sum 0.471 17.425 2.342 17.588 Atomic orbital electron populations 1.22516 0.86291 1.02827 1.01210 1.62130 1.08983 1.13966 1.41662 1.22876 0.96203 0.89083 1.02624 1.22894 0.92657 0.97135 0.89463 1.87940 1.70427 1.24147 1.49484 1.22833 0.91972 0.83556 1.02929 1.22196 0.95913 0.94308 0.92280 0.93338 1.22445 1.00910 0.94369 1.00609 1.21183 0.97799 0.93123 0.87297 0.92308 1.58860 1.14372 1.25039 1.38910 1.19045 0.94563 0.91945 0.94815 1.21501 1.26675 0.93460 1.12421 0.92540 1.25899 0.96431 0.98969 0.99062 1.70095 1.39227 1.09500 1.39513 0.85593 0.79004 0.77058 0.79861 1.19514 1.21203 1.19763 0.95069 0.89360 0.91854 0.87424 0.93898 0.86148 0.92539 0.88081 0.92566 0.91700 0.91730 0.86374 0.82471 0.99225 0.99550 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 8.57 127.69 1.09 1.50 16 2 N -0.54 -12.56 1.95 -896.05 -1.75 -14.32 16 3 C 0.02 0.37 5.65 86.31 0.49 0.85 16 4 C 0.06 1.09 7.01 72.01 0.50 1.60 16 5 O -0.40 -10.54 10.83 -148.98 -1.61 -12.15 16 6 C 0.06 1.77 5.87 72.01 0.42 2.19 16 7 C 0.06 1.65 2.25 44.92 0.10 1.75 16 8 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 9 C -0.14 -4.65 4.52 30.59 0.14 -4.52 16 10 C 0.12 4.77 2.40 44.92 0.11 4.88 16 11 H 0.06 2.47 5.93 -2.39 -0.01 2.46 16 12 N -0.84 -31.62 8.25 -168.67 -1.39 -33.01 16 13 C 0.03 1.78 4.62 29.85 0.14 1.92 16 14 C -0.50 -29.30 8.84 25.60 0.23 -29.08 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 16 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 17 N -0.94 -58.74 13.29 21.45 0.28 -58.46 16 18 Si 0.96 46.38 29.54 68.60 2.03 48.41 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 22 H 0.03 0.61 8.12 -2.38 -0.02 0.59 16 23 H 0.09 1.49 8.04 -2.39 -0.02 1.47 16 24 H 0.06 1.54 4.95 -2.39 -0.01 1.53 16 25 H 0.11 1.52 8.09 -2.38 -0.02 1.51 16 26 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 30 H 0.06 1.75 6.03 -2.39 -0.01 1.74 16 31 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.06 2.08 6.17 -2.39 -0.01 2.06 16 33 H 0.32 12.02 7.58 -89.69 -0.68 11.34 16 34 H 0.35 11.63 6.10 -89.70 -0.55 11.08 16 35 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 36 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -66.54 282.56 1.07 -65.47 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.17 Total: 22.96 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 3.68 Total: -18.91 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -2.86 Total: -105.78 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -1.61 Total: -12.15 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -66.54 1.07 -65.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.936 kcal (2) G-P(sol) polarization free energy of solvation -66.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds