Wall clock time and date at job start Mon Mar 30 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42097 * 110.54321 * 2 1 4 4 O 1.42098 * 110.54266 * 223.24412 * 2 1 3 5 5 N 1.65604 * 104.44900 * 111.62151 * 2 1 3 6 6 C 1.36349 * 125.63402 * 115.26187 * 5 2 1 7 7 C 1.34847 * 108.21761 * 180.14946 * 6 5 2 8 8 C 1.40896 * 107.41771 * 359.63274 * 7 6 5 9 9 C 1.34849 * 107.41486 * 0.22942 * 8 7 6 10 10 C 1.50698 * 125.88991 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47148 * 84.97548 * 10 9 8 12 12 H 1.07995 * 120.00070 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00112 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99927 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00041 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47118 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46975 * 120.00221 * 15 13 11 18 18 H 1.48501 * 109.46739 * 240.00472 * 15 13 11 19 19 H 1.08994 * 109.47016 * 308.37544 * 1 2 3 20 20 H 1.08997 * 109.47010 * 68.37770 * 1 2 3 21 21 H 1.09006 * 109.47066 * 188.37790 * 1 2 3 22 22 H 1.07999 * 125.89168 * 0.03427 * 6 5 2 23 23 H 1.08002 * 126.29438 * 179.90446 * 7 6 5 24 24 H 1.07997 * 126.29283 * 180.25032 * 8 7 6 25 25 H 1.09001 * 109.47279 * 204.97421 * 10 9 8 26 26 H 1.09005 * 109.47307 * 324.97807 * 10 9 8 27 27 H 0.97002 * 119.99491 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 2.8834 -1.7626 1.7270 7 6 3.0347 -1.8998 3.0599 8 6 2.4582 -0.7674 3.6686 9 6 1.9720 0.0161 2.6846 10 6 1.2684 1.3355 2.8722 11 6 2.2896 2.4384 2.9804 12 1 3.3427 2.2072 2.9191 13 6 1.8794 3.7429 3.1567 14 7 0.5969 4.0246 3.2309 15 14 3.1453 5.1102 3.2902 16 1 4.5094 4.5347 3.1760 17 1 2.9299 6.0925 2.1976 18 1 3.0027 5.7903 4.6026 19 1 -0.3633 0.6380 0.8056 20 1 -0.3633 0.3787 -0.9553 21 1 -0.3633 -1.0168 0.1497 22 1 3.2218 -2.4612 0.9761 23 1 3.5141 -2.7238 3.5674 24 1 2.4140 -0.5641 4.7283 25 1 0.6180 1.5251 2.0183 26 1 0.6713 1.3026 3.7835 27 1 0.3084 4.9424 3.3553 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260988652.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:07 Heat of formation + Delta-G solvation = -18.919259 kcal Electronic energy + Delta-G solvation = -14348.777658 eV Core-core repulsion = 11814.330160 eV Total energy + Delta-G solvation = -2534.447498 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.67014 -37.00340 -35.77290 -33.32522 -31.05816 -30.50316 -29.26223 -26.33600 -22.95119 -21.29022 -20.15233 -18.24873 -17.18503 -16.48173 -16.13670 -15.51440 -14.53708 -14.27066 -13.79457 -13.28490 -13.13661 -12.92417 -12.28286 -12.11049 -11.96804 -11.84781 -11.62811 -11.55578 -11.10521 -10.85791 -10.72386 -10.55327 -9.84359 -9.46119 -8.78110 -8.43257 -7.43609 -6.05573 -4.06813 0.24092 2.40407 2.69565 3.34219 3.41172 3.47566 3.58596 3.89378 4.35797 4.48808 4.81001 5.05555 5.07073 5.31944 5.74089 5.78546 5.86677 6.06887 6.59052 6.71256 6.99101 7.19693 7.32978 7.58410 7.62951 7.91760 8.21021 8.94704 9.57042 11.04672 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.029950 B = 0.010769 C = 0.009343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.680285 B = 2599.355179 C = 2996.197712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.664 4.664 2 S 2.587 3.413 3 O -0.898 6.898 4 O -0.956 6.956 5 N -0.802 5.802 6 C -0.034 4.034 7 C -0.163 4.163 8 C -0.202 4.202 9 C 0.089 3.911 10 C 0.067 3.933 11 C -0.497 4.497 12 H 0.062 0.938 13 C 0.060 3.940 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.284 1.284 19 H 0.147 0.853 20 H 0.133 0.867 21 H 0.128 0.872 22 H 0.172 0.828 23 H 0.134 0.866 24 H 0.137 0.863 25 H 0.021 0.979 26 H 0.054 0.946 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 -9.596 -3.781 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.815 4.815 2 S 2.683 3.317 3 O -0.888 6.888 4 O -0.946 6.946 5 N -0.596 5.596 6 C -0.156 4.156 7 C -0.188 4.188 8 C -0.226 4.226 9 C -0.017 4.017 10 C 0.029 3.971 11 C -0.535 4.535 12 H 0.080 0.920 13 C -0.141 4.141 14 N -0.539 5.539 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.210 1.210 19 H 0.165 0.835 20 H 0.152 0.848 21 H 0.147 0.853 22 H 0.189 0.811 23 H 0.152 0.848 24 H 0.155 0.845 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.724 -9.085 -4.723 10.265 hybrid contribution 0.058 0.608 0.335 0.697 sum -0.666 -8.477 -4.387 9.568 Atomic orbital electron populations 1.30499 1.26123 1.12072 1.12808 1.05882 0.78571 0.74930 0.72287 1.93795 1.76318 1.35268 1.83448 1.93590 1.78369 1.62414 1.60258 1.53435 1.54962 1.26912 1.24298 1.21699 1.05471 0.90144 0.98284 1.21151 1.04729 0.99920 0.93028 1.20909 1.06786 0.95944 0.98925 1.21639 1.01038 0.96551 0.82506 1.18257 0.95254 0.84779 0.98777 1.20939 0.92869 0.90511 1.49185 0.91960 1.24933 0.95457 0.98728 0.95003 1.69931 1.13935 1.19632 1.50396 0.86403 0.81790 0.81691 0.77398 1.19580 1.20908 1.21038 0.83475 0.84811 0.85316 0.81073 0.84778 0.84489 0.96074 0.92809 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -8.73 10.82 101.05 1.09 -7.64 15 2 S 2.59 45.33 5.60 -107.50 -0.60 44.72 15 3 O -0.90 -20.07 17.05 -57.54 -0.98 -21.05 15 4 O -0.96 -17.19 17.18 -57.54 -0.99 -18.18 15 5 N -0.80 -15.14 3.03 -9.12 -0.03 -15.16 15 6 C -0.03 -0.57 10.90 -16.75 -0.18 -0.75 15 7 C -0.16 -2.71 10.86 -39.78 -0.43 -3.14 15 8 C -0.20 -3.89 10.77 -39.78 -0.43 -4.32 15 9 C 0.09 1.88 5.96 -81.79 -0.49 1.39 15 10 C 0.07 1.63 4.75 -29.04 -0.14 1.49 15 11 C -0.50 -13.88 8.90 -34.44 -0.31 -14.19 15 12 H 0.06 1.79 7.74 -52.49 -0.41 1.38 15 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 14 N -0.90 -25.92 13.29 55.43 0.74 -25.18 15 15 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 15 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 17 H -0.28 -6.93 7.11 56.52 0.40 -6.52 15 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 19 H 0.15 2.14 6.04 -51.93 -0.31 1.83 15 20 H 0.13 1.40 8.14 -51.93 -0.42 0.98 15 21 H 0.13 1.35 8.14 -51.92 -0.42 0.93 15 22 H 0.17 2.42 7.84 -52.49 -0.41 2.00 15 23 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 24 H 0.14 2.48 8.06 -52.49 -0.42 2.06 15 25 H 0.02 0.51 5.15 -51.93 -0.27 0.24 15 26 H 0.05 1.34 8.14 -51.93 -0.42 0.91 15 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 251.01 15.07 3.78 3.78 Total: -1.00 -33.49 251.01 -6.73 -40.21 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -2.65 Total: -0.67 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -0.98 Total: -25.56 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.71 Total: -40.35 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -1.97 Total: -39.23 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 45.33 SS G_CDS: -0.60 Total: 44.72 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.49 -6.73 -40.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260988652.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.296 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds