Wall clock time and date at job start Mon Mar 30 2020 03:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35551 * 117.00000 * 2 1 4 4 N 1.32734 * 120.40723 * 0.24805 * 3 2 1 5 5 C 1.32723 * 121.15618 * 180.26042 * 4 3 2 6 6 N 1.38412 * 119.00782 * 179.75746 * 5 4 3 7 7 N 1.32043 * 121.98703 * 359.47929 * 5 4 3 8 8 C 1.34177 * 120.67318 * 0.25843 * 7 5 4 9 9 C 1.41447 * 120.60722 * 179.97438 * 8 7 5 10 10 H 1.08005 * 120.00109 * 173.61156 * 9 8 7 11 11 C 1.40080 * 120.00203 * 353.61030 * 9 8 7 12 12 N 1.30696 * 119.99688 * 6.19204 * 11 9 8 13 13 Si 1.86798 * 120.00418 * 186.19839 * 11 9 8 14 14 H 1.48501 * 109.47201 * 94.98179 * 13 11 9 15 15 H 1.48500 * 109.47242 * 214.98327 * 13 11 9 16 16 H 1.48499 * 109.46909 * 334.98168 * 13 11 9 17 17 C 1.39431 * 120.40643 * 180.02562 * 3 2 1 18 18 Cl 1.73591 * 120.89411 * 359.97438 * 17 3 2 19 19 H 1.08999 * 109.47131 * 60.00156 * 1 2 3 20 20 H 1.09000 * 109.47375 * 180.02562 * 1 2 3 21 21 H 1.09011 * 109.47029 * 300.00530 * 1 2 3 22 22 H 0.96996 * 120.00199 * 179.73154 * 6 5 4 23 23 H 0.96992 * 119.99634 * 359.45666 * 6 5 4 24 24 H 0.97003 * 120.00029 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 7 1.3294 2.3261 0.0050 5 6 1.9164 3.5164 -0.0001 6 7 1.1277 4.6538 0.0003 7 7 3.2303 3.6484 -0.0001 8 6 4.0267 2.5686 -0.0001 9 6 5.4339 2.7116 -0.0006 10 1 6.0652 1.8415 0.1035 11 6 6.0088 3.9818 -0.1362 12 7 5.2496 5.0456 -0.1405 13 14 7.8605 4.1552 -0.3110 14 1 8.2170 4.2293 -1.7507 15 1 8.3086 5.3941 0.3743 16 1 8.5280 2.9801 0.3044 17 6 3.4363 1.2906 -0.0005 18 17 4.4145 -0.1434 -0.0006 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5140 0.8900 22 1 1.5415 5.5310 0.0005 23 1 0.1611 4.5735 -0.0038 24 1 5.6476 5.9252 -0.2347 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261062942.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:55 Heat of formation + Delta-G solvation = -20.319003 kcal Electronic energy + Delta-G solvation = -13740.772883 eV Core-core repulsion = 11100.680637 eV Total energy + Delta-G solvation = -2640.092246 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.17304 -39.06167 -36.97399 -36.05323 -34.57345 -32.95573 -30.52379 -28.95570 -27.27097 -23.87620 -23.35383 -20.10820 -19.31460 -17.66387 -17.06705 -16.84664 -16.66047 -16.39482 -15.81667 -14.99090 -14.94190 -14.53911 -13.15569 -13.10035 -12.89946 -12.76172 -12.71431 -12.25446 -11.94764 -11.58546 -11.51847 -11.31297 -10.53140 -10.29033 -9.44593 -8.64108 -8.41882 -6.80828 0.84735 0.99264 1.44599 1.58766 1.60070 1.89935 2.20199 2.32144 2.82740 2.86192 3.81114 3.97591 4.50152 4.52057 4.71747 4.75309 5.00063 5.05849 5.25389 6.08477 6.23998 6.34015 6.60047 6.78205 6.89743 7.13137 8.23465 8.34129 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.029366 B = 0.011147 C = 0.008122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.244123 B = 2511.296558 C = 3446.439552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.316 6.316 3 C 0.385 3.615 4 N -0.694 5.694 5 C 0.568 3.432 6 N -0.816 5.816 7 N -0.589 5.589 8 C 0.290 3.710 9 C -0.421 4.421 10 H 0.100 0.900 11 C 0.027 3.973 12 N -0.727 5.727 13 Si 0.989 3.011 14 H -0.262 1.262 15 H -0.262 1.262 16 H -0.255 1.255 17 C -0.314 4.314 18 Cl -0.083 7.083 19 H 0.050 0.950 20 H 0.124 0.876 21 H 0.050 0.950 22 H 0.414 0.586 23 H 0.411 0.589 24 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 -1.244 -0.223 3.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.223 6.223 3 C 0.203 3.797 4 N -0.441 5.441 5 C 0.207 3.793 6 N -0.368 5.368 7 N -0.323 5.323 8 C 0.162 3.838 9 C -0.453 4.453 10 H 0.118 0.882 11 C -0.198 4.198 12 N -0.347 5.347 13 Si 0.809 3.191 14 H -0.187 1.187 15 H -0.186 1.186 16 H -0.179 1.179 17 C -0.351 4.351 18 Cl -0.056 7.056 19 H 0.069 0.931 20 H 0.142 0.858 21 H 0.069 0.931 22 H 0.245 0.755 23 H 0.242 0.758 24 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.487 -0.696 -0.215 3.563 hybrid contribution 0.522 -0.322 -0.076 0.618 sum -2.965 -1.018 -0.291 3.149 Atomic orbital electron populations 1.22944 0.76487 1.04041 1.01760 1.86225 1.24000 1.24193 1.87842 1.19218 0.87334 0.84737 0.88387 1.67214 1.39929 0.97383 1.39603 1.19592 0.87242 0.85503 0.87006 1.41340 1.07827 1.03969 1.83635 1.69070 1.01007 1.30919 1.31263 1.18501 0.94534 0.83884 0.86915 1.20097 0.89873 0.95450 1.39902 0.88165 1.27053 1.05695 0.94505 0.92560 1.70142 1.39186 0.99635 1.25775 0.85076 0.75066 0.79433 0.79570 1.18672 1.18613 1.17852 1.21329 0.88459 0.89311 1.36000 1.98149 1.71230 1.37991 1.98223 0.93087 0.85826 0.93074 0.75520 0.75769 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.41 113.37 1.18 2.51 14 2 O -0.32 -13.41 10.04 -88.56 -0.89 -14.30 14 3 C 0.39 18.91 7.53 84.84 0.64 19.54 14 4 N -0.69 -32.99 9.37 -310.95 -2.91 -35.90 14 5 C 0.57 27.49 8.66 261.58 2.27 29.75 14 6 N -0.82 -30.18 9.07 -59.87 -0.54 -30.72 14 7 N -0.59 -31.92 8.08 -191.58 -1.55 -33.47 14 8 C 0.29 16.07 6.57 40.20 0.26 16.33 14 9 C -0.42 -22.18 8.86 23.51 0.21 -21.97 14 10 H 0.10 5.07 6.81 -2.91 -0.02 5.05 14 11 C 0.03 1.32 5.49 85.31 0.47 1.79 14 12 N -0.73 -36.20 11.55 21.84 0.25 -35.95 14 13 Si 0.99 36.01 29.56 68.60 2.03 38.04 14 14 H -0.26 -9.28 7.11 99.48 0.71 -8.57 14 15 H -0.26 -8.93 7.11 99.48 0.71 -8.22 14 16 H -0.26 -9.12 7.11 99.48 0.71 -8.41 14 17 C -0.31 -16.38 6.44 23.18 0.15 -16.23 14 18 Cl -0.08 -3.84 27.21 -2.72 -0.07 -3.91 14 19 H 0.05 1.59 8.12 -2.39 -0.02 1.57 14 20 H 0.12 2.82 8.14 -2.39 -0.02 2.80 14 21 H 0.05 1.59 8.12 -2.38 -0.02 1.57 14 22 H 0.41 14.27 8.94 -92.71 -0.83 13.44 14 23 H 0.41 12.49 8.94 -92.71 -0.83 11.67 14 24 H 0.29 12.66 8.29 -92.71 -0.77 11.89 14 Total: -1.00 -62.80 237.51 1.10 -61.70 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -0.38 Total: 22.78 kcal Atomic # 6 Polarization: 26.56 SS G_CDS: 5.17 Total: 31.73 kcal Atomic # 7 Polarization: -131.29 SS G_CDS: -4.75 Total: -136.04 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.89 Total: -14.30 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Atomic # 17 Polarization: -3.84 SS G_CDS: -0.07 Total: -3.91 kcal Total: -62.80 1.10 -61.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062942.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.379 kcal (2) G-P(sol) polarization free energy of solvation -62.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds