Wall clock time and date at job start Mon Mar 30 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76202 * 100.00312 * 2 1 4 4 N 1.29753 * 124.95201 * 180.30340 * 3 2 1 5 5 C 1.32100 * 116.85082 * 180.20217 * 4 3 2 6 6 C 1.50699 * 122.70312 * 179.75378 * 5 4 3 7 7 H 1.08999 * 109.47170 * 334.71156 * 6 5 4 8 8 C 1.53009 * 109.47029 * 214.71334 * 6 5 4 9 9 C 1.50700 * 109.47258 * 94.71715 * 6 5 4 10 10 H 1.07996 * 119.99623 * 35.00438 * 9 6 5 11 11 C 1.37876 * 120.00135 * 215.01306 * 9 6 5 12 12 N 1.31509 * 120.00225 * 184.90056 * 11 9 6 13 13 Si 1.86799 * 119.99657 * 4.89959 * 11 9 6 14 14 H 1.48499 * 109.47204 * 84.82035 * 13 11 9 15 15 H 1.48504 * 109.47047 * 204.81571 * 13 11 9 16 16 H 1.48501 * 109.47248 * 324.81554 * 13 11 9 17 17 C 1.33338 * 114.58538 * 359.48928 * 5 4 3 18 18 S 1.70967 * 124.94960 * 359.97428 * 3 2 1 19 19 H 1.09004 * 109.47460 * 59.99503 * 1 2 3 20 20 H 1.09001 * 109.47582 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47210 * 300.00314 * 1 2 3 22 22 H 1.09007 * 109.46900 * 294.89302 * 8 6 5 23 23 H 1.09000 * 109.47008 * 54.88560 * 8 6 5 24 24 H 1.08997 * 109.47031 * 174.89091 * 8 6 5 25 25 H 0.96997 * 120.00286 * 179.97438 * 12 11 9 26 26 H 1.08006 * 125.94017 * 180.30114 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 3.2924 2.2825 -0.0056 5 6 3.3363 3.6028 -0.0005 6 6 4.6308 4.3745 -0.0005 7 1 5.4197 3.7607 0.4341 8 6 4.4636 5.6509 0.8265 9 6 4.9990 4.7377 -1.4160 10 1 4.2255 4.9761 -2.1309 11 6 6.3234 4.7654 -1.7983 12 7 6.6514 5.1750 -3.0042 13 14 7.6520 4.2211 -0.6033 14 1 7.8064 2.7458 -0.6731 15 1 8.9379 4.8709 -0.9632 16 1 7.2680 4.6140 0.7764 17 6 2.1429 4.1975 -0.0008 18 16 0.9061 2.9432 -0.0006 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 3.7394 6.3057 0.3417 23 1 4.1093 5.3933 1.8246 24 1 5.4228 6.1629 0.9022 25 1 7.5831 5.1949 -3.2730 26 1 1.9656 5.2629 -0.0018 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261100900.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:13 Heat of formation + Delta-G solvation = 35.993035 kcal Electronic energy + Delta-G solvation = -11622.261674 eV Core-core repulsion = 9532.948222 eV Total energy + Delta-G solvation = -2089.313452 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.20942 -34.19533 -31.67676 -29.47242 -28.45815 -25.66783 -24.75461 -21.70171 -18.80980 -17.96347 -16.99096 -16.15548 -14.88536 -14.53596 -14.23748 -13.69268 -13.38526 -13.10788 -12.89752 -12.52051 -12.22452 -11.51814 -11.19299 -10.95934 -10.70785 -10.63761 -9.94158 -9.81505 -9.46087 -9.22486 -9.08764 -8.62585 -8.48081 -7.32720 -6.11851 -4.11967 1.11466 1.29166 1.44198 2.15197 2.52233 3.31762 3.38269 3.41259 3.48164 4.40772 4.89783 4.91102 5.13899 5.23410 5.49711 5.84495 6.15072 6.32220 6.40586 6.64078 6.87603 7.04914 7.24003 7.64434 8.27425 8.44065 8.90733 9.49058 11.00738 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.037724 B = 0.008083 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.045808 B = 3463.344905 C = 3772.160598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 S -0.007 6.007 3 C 0.013 3.987 4 N -0.438 5.438 5 C 0.129 3.871 6 C 0.072 3.928 7 H 0.051 0.949 8 C -0.135 4.135 9 C -0.504 4.504 10 H 0.074 0.926 11 C 0.076 3.924 12 N -0.895 5.895 13 Si 0.876 3.124 14 H -0.272 1.272 15 H -0.288 1.288 16 H -0.263 1.263 17 C -0.254 4.254 18 S 0.069 5.931 19 H 0.089 0.911 20 H 0.114 0.886 21 H 0.087 0.913 22 H 0.050 0.950 23 H 0.026 0.974 24 H 0.052 0.948 25 H 0.266 0.734 26 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.409 -6.723 7.659 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.336 4.336 2 S 0.223 5.777 3 C -0.374 4.374 4 N -0.156 5.156 5 C -0.003 4.003 6 C 0.051 3.949 7 H 0.070 0.930 8 C -0.193 4.193 9 C -0.542 4.542 10 H 0.092 0.908 11 C -0.126 4.126 12 N -0.532 5.532 13 Si 0.703 3.297 14 H -0.198 1.198 15 H -0.214 1.214 16 H -0.188 1.188 17 C -0.395 4.395 18 S 0.317 5.683 19 H 0.107 0.893 20 H 0.133 0.867 21 H 0.106 0.894 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.148 -8.031 7.513 16.386 hybrid contribution 0.700 1.335 0.322 1.541 sum -11.448 -6.696 7.835 15.403 Atomic orbital electron populations 1.23791 0.95846 1.07505 1.06464 1.85526 1.04419 0.95426 1.92353 1.28259 0.95257 1.03534 1.10390 1.66449 1.22494 1.11525 1.15083 1.21003 0.97545 0.86744 0.94970 1.17998 0.87879 0.91177 0.97889 0.93050 1.22026 1.01229 0.99007 0.97047 1.20763 0.93500 1.46527 0.93448 0.90777 1.25001 0.98405 0.94147 0.95075 1.69880 1.18259 1.46331 1.18730 0.86862 0.81083 0.79683 0.82030 1.19770 1.21428 1.18804 1.26585 0.93318 1.03285 1.16309 1.83420 1.13535 0.98996 1.72306 0.89254 0.86704 0.89365 0.93129 0.95447 0.92878 0.92434 0.80646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.44 101.05 0.95 -0.59 15 2 S -0.01 -0.10 22.96 -107.50 -2.47 -2.57 15 3 C 0.01 0.23 7.59 51.88 0.39 0.63 15 4 N -0.44 -9.92 10.59 -10.94 -0.12 -10.03 15 5 C 0.13 2.93 5.71 -84.19 -0.48 2.44 15 6 C 0.07 1.77 2.37 -92.92 -0.22 1.55 15 7 H 0.05 1.31 5.29 -51.93 -0.27 1.03 15 8 C -0.13 -2.81 8.54 37.16 0.32 -2.50 15 9 C -0.50 -14.32 8.84 -34.44 -0.30 -14.62 15 10 H 0.07 2.29 8.06 -52.49 -0.42 1.87 15 11 C 0.08 2.22 5.47 -17.82 -0.10 2.12 15 12 N -0.89 -27.42 13.96 55.43 0.77 -26.65 15 13 Si 0.88 21.93 26.99 -169.99 -4.59 17.34 15 14 H -0.27 -6.87 7.11 56.52 0.40 -6.47 15 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 16 H -0.26 -6.24 6.82 56.52 0.39 -5.85 15 17 C -0.25 -4.87 10.34 29.02 0.30 -4.57 15 18 S 0.07 1.09 21.54 -107.50 -2.32 -1.22 15 19 H 0.09 0.81 7.97 -51.91 -0.41 0.40 15 20 H 0.11 0.76 8.14 -51.92 -0.42 0.34 15 21 H 0.09 0.76 7.97 -51.91 -0.41 0.34 15 22 H 0.05 0.99 7.20 -51.92 -0.37 0.62 15 23 H 0.03 0.50 8.14 -51.93 -0.42 0.07 15 24 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.27 7.63 8.31 -40.82 -0.34 7.29 15 26 H 0.18 3.02 7.11 -52.48 -0.37 2.65 15 LS Contribution 251.71 15.07 3.79 3.79 Total: -1.00 -31.82 251.71 -6.75 -38.56 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: -2.69 Total: -3.69 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 0.86 Total: -15.54 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.66 Total: -36.68 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.59 Total: 17.34 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -4.78 Total: -3.79 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.82 -6.75 -38.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100900.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.558 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds