Wall clock time and date at job start Mon Mar 30 2020 03:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 110.99886 * 2 1 4 4 C 1.46901 * 111.00196 * 123.95418 * 2 1 3 5 5 C 1.52998 * 109.47031 * 170.00164 * 4 2 1 6 6 N 1.46902 * 109.46980 * 183.60391 * 5 4 2 7 7 C 1.46903 * 111.00234 * 162.70495 * 6 5 4 8 8 C 1.50699 * 109.47483 * 197.07069 * 7 6 5 9 9 H 1.07993 * 119.99481 * 5.31613 * 8 7 6 10 10 C 1.37874 * 119.99770 * 185.31501 * 8 7 6 11 11 N 1.31514 * 120.00591 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99550 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47312 * 90.00257 * 12 10 8 14 14 H 1.48498 * 109.47095 * 210.00371 * 12 10 8 15 15 H 1.48503 * 109.47365 * 330.00188 * 12 10 8 16 16 C 1.46898 * 111.00031 * 286.66036 * 6 5 4 17 17 C 1.54038 * 113.81565 * 163.17172 * 16 6 5 18 18 O 1.44447 * 85.42298 * 223.23453 * 17 16 6 19 19 C 1.44180 * 93.37912 * 24.08687 * 18 17 16 20 20 H 1.08994 * 109.47459 * 296.04347 * 1 2 3 21 21 H 1.08995 * 109.47025 * 56.04737 * 1 2 3 22 22 H 1.09001 * 109.46662 * 176.04435 * 1 2 3 23 23 H 1.09000 * 109.47240 * 183.95301 * 3 2 1 24 24 H 1.09001 * 109.47310 * 303.95442 * 3 2 1 25 25 H 1.08996 * 109.46935 * 63.95445 * 3 2 1 26 26 H 1.09002 * 109.47194 * 50.00286 * 4 2 1 27 27 H 1.09000 * 109.46796 * 290.00210 * 4 2 1 28 28 H 1.09003 * 109.47156 * 63.60782 * 5 4 2 29 29 H 1.09002 * 109.47740 * 303.60588 * 5 4 2 30 30 H 1.09006 * 109.46759 * 317.07518 * 7 6 5 31 31 H 1.09000 * 109.47121 * 77.06650 * 7 6 5 32 32 H 0.96995 * 120.00541 * 179.97438 * 11 10 8 33 33 H 1.09004 * 112.99878 * 294.99096 * 16 6 5 34 34 H 1.09004 * 113.86073 * 337.33757 * 17 16 6 35 35 H 1.08996 * 113.87084 * 109.04534 * 17 16 6 36 36 H 1.08996 * 113.86162 * 221.76044 * 19 18 17 37 37 H 1.08998 * 113.98200 * 90.07620 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9703 6 7 4.0167 -1.7940 2.0621 7 6 5.3419 -2.3356 1.7327 8 6 5.6525 -3.4937 2.6456 9 1 4.9042 -3.8520 3.3369 10 6 6.8919 -4.0958 2.5980 11 7 7.8034 -3.6592 1.7565 12 14 7.2771 -5.5308 3.7302 13 1 6.9086 -6.8034 3.0593 14 1 8.7287 -5.5386 4.0432 15 1 6.5002 -5.3914 4.9881 16 6 4.0526 -1.0477 3.3269 17 6 4.1792 -1.9430 4.5740 18 8 3.1768 -1.0793 5.1534 19 6 2.6598 -0.6757 3.8693 20 1 -0.3634 0.4512 0.9232 21 1 -0.3633 0.5739 -0.8524 22 1 -0.3633 -1.0253 -0.0709 23 1 3.0827 1.3433 -0.0708 24 1 1.5897 1.9164 -0.8524 25 1 1.7043 1.8723 0.9233 26 1 1.5090 -1.7407 1.1756 27 1 1.7975 -0.2247 2.0628 28 1 3.9976 0.0164 0.9965 29 1 3.7063 -1.4395 0.0148 30 1 5.3477 -2.6771 0.6975 31 1 6.0948 -1.5582 1.8629 32 1 8.6754 -4.0825 1.7233 33 1 4.7554 -0.2146 3.3100 34 1 3.8414 -2.9675 4.4174 35 1 5.1512 -1.8828 5.0634 36 1 2.4294 0.3874 3.8011 37 1 1.8569 -1.3110 3.4955 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261106893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:44 Heat of formation + Delta-G solvation = 9.297392 kcal Electronic energy + Delta-G solvation = -16774.991641 eV Core-core repulsion = 14168.399688 eV Total energy + Delta-G solvation = -2606.591953 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.92270 -37.54495 -35.41517 -32.61382 -29.58874 -28.17980 -27.54887 -26.20930 -25.71560 -23.28344 -21.59402 -20.50852 -19.46276 -16.61613 -16.19531 -15.76211 -15.59902 -14.95444 -14.60187 -14.48786 -14.41595 -13.19936 -13.04182 -12.92416 -12.36134 -12.13256 -12.10510 -11.88393 -11.69064 -11.53579 -11.22986 -10.96729 -10.79714 -10.50509 -10.37607 -10.03164 -9.61024 -9.36108 -8.95406 -8.45362 -8.25446 -7.42117 -6.06016 -4.08059 3.30327 3.36987 3.39570 3.97245 4.28939 4.40564 4.88405 4.95160 5.19785 5.23779 5.29291 5.37744 5.40430 5.57421 5.61416 5.67409 5.73492 5.82966 5.84659 5.98012 6.00443 6.14559 6.29450 6.38921 6.54857 6.64337 6.80794 7.09747 7.10654 7.18645 7.28652 7.77168 8.01542 8.09237 8.46042 8.99330 9.56662 11.04441 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.030886 B = 0.007286 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.340194 B = 3842.165368 C = 4387.919104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.549 5.549 3 C 0.022 3.978 4 C 0.050 3.950 5 C 0.059 3.941 6 N -0.529 5.529 7 C 0.193 3.807 8 C -0.510 4.510 9 H 0.069 0.931 10 C 0.057 3.943 11 N -0.897 5.897 12 Si 0.894 3.106 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.272 1.272 16 C 0.029 3.971 17 C 0.065 3.935 18 O -0.403 6.403 19 C 0.039 3.961 20 H 0.022 0.978 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.022 0.978 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.029 0.971 31 H -0.003 1.003 32 H 0.261 0.739 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.885 7.599 -0.857 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.126 4.126 4 C -0.078 4.078 5 C -0.070 4.070 6 N -0.256 5.256 7 C 0.068 3.932 8 C -0.549 4.549 9 H 0.087 0.913 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.722 3.278 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.197 1.197 16 C -0.080 4.080 17 C -0.011 4.011 18 O -0.321 6.321 19 C -0.038 4.038 20 H 0.040 0.960 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.015 0.985 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.916 7.005 -1.006 13.010 hybrid contribution 0.775 0.313 0.870 1.207 sum -10.141 7.318 -0.136 12.506 Atomic orbital electron populations 1.22345 0.87617 1.02186 1.00001 1.61897 1.07498 1.13651 1.44265 1.22424 1.01321 0.88968 0.99906 1.22506 0.96563 0.98224 0.90486 1.22001 0.93106 0.95671 0.96181 1.62385 1.30095 1.32555 1.00520 1.19763 0.81834 0.94410 0.97182 1.21264 0.98126 1.14704 1.20773 0.91308 1.24992 0.96238 0.97414 0.95853 1.69953 1.05392 1.41597 1.36736 0.86552 0.77408 0.82747 0.81086 1.20603 1.21339 1.19687 1.24729 0.95177 0.95820 0.92290 1.24177 0.91838 0.95089 0.89974 1.89623 1.52453 1.63432 1.26631 1.24226 0.97088 0.99255 0.83276 0.95968 0.91722 0.91330 0.91046 0.91790 0.95976 0.90026 0.94166 0.95878 0.90346 0.95293 0.98512 0.92892 0.92079 0.88521 0.89421 0.90863 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.57 60.06 0.57 0.87 16 2 N -0.55 -7.30 5.02 -251.27 -1.26 -8.56 16 3 C 0.02 0.26 9.32 60.07 0.56 0.82 16 4 C 0.05 0.74 4.04 -3.82 -0.02 0.72 16 5 C 0.06 1.04 4.81 -3.82 -0.02 1.03 16 6 N -0.53 -10.90 4.46 -236.00 -1.05 -11.95 16 7 C 0.19 4.84 4.74 -4.97 -0.02 4.81 16 8 C -0.51 -13.62 7.93 -34.44 -0.27 -13.89 16 9 H 0.07 1.79 5.44 -52.49 -0.29 1.50 16 10 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 11 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 12 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 C 0.03 0.56 3.25 -66.64 -0.22 0.35 16 17 C 0.07 1.29 7.13 37.64 0.27 1.56 16 18 O -0.40 -7.67 12.46 -35.23 -0.44 -8.11 16 19 C 0.04 0.64 6.41 37.64 0.24 0.88 16 20 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 21 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 22 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 23 H 0.07 0.89 6.55 -51.93 -0.34 0.55 16 24 H 0.06 0.65 8.12 -51.93 -0.42 0.22 16 25 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.08 1.25 8.06 -51.93 -0.42 0.84 16 27 H 0.04 0.57 4.57 -51.93 -0.24 0.33 16 28 H 0.02 0.40 6.62 -51.93 -0.34 0.06 16 29 H 0.08 1.48 7.68 -51.93 -0.40 1.08 16 30 H 0.03 0.78 7.69 -51.93 -0.40 0.38 16 31 H 0.00 -0.08 8.04 -51.93 -0.42 -0.50 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 2.00 6.39 -51.93 -0.33 1.67 16 35 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.07 1.06 7.76 -51.93 -0.40 0.65 16 37 H 0.08 1.33 6.78 -51.93 -0.35 0.98 16 LS Contribution 289.58 15.07 4.36 4.36 Total: -1.00 -28.78 289.58 -7.69 -36.47 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.02 Total: -1.56 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 1.00 Total: -1.40 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -1.58 Total: -45.86 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.44 Total: -8.11 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.78 -7.69 -36.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261106893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.771 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds