Wall clock time and date at job start Mon Mar 30 2020 03:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 110.99886 * 2 1 4 4 C 1.46901 * 111.00196 * 123.95418 * 2 1 3 5 5 C 1.52998 * 109.47031 * 170.00164 * 4 2 1 6 6 N 1.46902 * 109.46980 * 183.60391 * 5 4 2 7 7 C 1.46903 * 111.00234 * 162.70495 * 6 5 4 8 8 C 1.50699 * 109.47483 * 197.07069 * 7 6 5 9 9 H 1.07993 * 119.99481 * 5.31613 * 8 7 6 10 10 C 1.37874 * 119.99770 * 185.31501 * 8 7 6 11 11 N 1.31514 * 120.00591 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99550 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47312 * 90.00257 * 12 10 8 14 14 H 1.48498 * 109.47095 * 210.00371 * 12 10 8 15 15 H 1.48503 * 109.47365 * 330.00188 * 12 10 8 16 16 C 1.46898 * 111.00031 * 286.66036 * 6 5 4 17 17 C 1.54038 * 113.81565 * 163.17172 * 16 6 5 18 18 O 1.44447 * 85.42298 * 223.23453 * 17 16 6 19 19 C 1.44180 * 93.37912 * 24.08687 * 18 17 16 20 20 H 1.08994 * 109.47459 * 296.04347 * 1 2 3 21 21 H 1.08995 * 109.47025 * 56.04737 * 1 2 3 22 22 H 1.09001 * 109.46662 * 176.04435 * 1 2 3 23 23 H 1.09000 * 109.47240 * 183.95301 * 3 2 1 24 24 H 1.09001 * 109.47310 * 303.95442 * 3 2 1 25 25 H 1.08996 * 109.46935 * 63.95445 * 3 2 1 26 26 H 1.09002 * 109.47194 * 50.00286 * 4 2 1 27 27 H 1.09000 * 109.46796 * 290.00210 * 4 2 1 28 28 H 1.09003 * 109.47156 * 63.60782 * 5 4 2 29 29 H 1.09002 * 109.47740 * 303.60588 * 5 4 2 30 30 H 1.09006 * 109.46759 * 317.07518 * 7 6 5 31 31 H 1.09000 * 109.47121 * 77.06650 * 7 6 5 32 32 H 0.96995 * 120.00541 * 179.97438 * 11 10 8 33 33 H 1.09004 * 112.99878 * 294.99096 * 16 6 5 34 34 H 1.09004 * 113.86073 * 337.33757 * 17 16 6 35 35 H 1.08996 * 113.87084 * 109.04534 * 17 16 6 36 36 H 1.08996 * 113.86162 * 221.76044 * 19 18 17 37 37 H 1.08998 * 113.98200 * 90.07620 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9703 6 7 4.0167 -1.7940 2.0621 7 6 5.3419 -2.3356 1.7327 8 6 5.6525 -3.4937 2.6456 9 1 4.9042 -3.8520 3.3369 10 6 6.8919 -4.0958 2.5980 11 7 7.8034 -3.6592 1.7565 12 14 7.2771 -5.5308 3.7302 13 1 6.9086 -6.8034 3.0593 14 1 8.7287 -5.5386 4.0432 15 1 6.5002 -5.3914 4.9881 16 6 4.0526 -1.0477 3.3269 17 6 4.1792 -1.9430 4.5740 18 8 3.1768 -1.0793 5.1534 19 6 2.6598 -0.6757 3.8693 20 1 -0.3634 0.4512 0.9232 21 1 -0.3633 0.5739 -0.8524 22 1 -0.3633 -1.0253 -0.0709 23 1 3.0827 1.3433 -0.0708 24 1 1.5897 1.9164 -0.8524 25 1 1.7043 1.8723 0.9233 26 1 1.5090 -1.7407 1.1756 27 1 1.7975 -0.2247 2.0628 28 1 3.9976 0.0164 0.9965 29 1 3.7063 -1.4395 0.0148 30 1 5.3477 -2.6771 0.6975 31 1 6.0948 -1.5582 1.8629 32 1 8.6754 -4.0825 1.7233 33 1 4.7554 -0.2146 3.3100 34 1 3.8414 -2.9675 4.4174 35 1 5.1512 -1.8828 5.0634 36 1 2.4294 0.3874 3.8011 37 1 1.8569 -1.3110 3.4955 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261106893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:44 Heat of formation + Delta-G solvation = -12.751429 kcal Electronic energy + Delta-G solvation = -16775.947749 eV Core-core repulsion = 14168.399688 eV Total energy + Delta-G solvation = -2607.548061 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.43439 -38.71530 -36.98244 -34.62861 -31.08909 -29.79731 -28.44960 -27.89526 -27.23246 -24.69816 -23.34769 -21.75726 -21.00909 -18.58342 -17.62154 -17.29613 -17.09152 -16.37156 -16.09790 -15.76357 -15.62490 -14.75979 -14.58947 -14.43757 -13.88485 -13.75358 -13.54062 -13.21825 -12.89383 -12.81774 -12.60853 -12.56316 -12.27830 -12.20544 -12.02619 -11.57231 -11.33774 -11.22854 -10.59936 -10.52198 -9.29331 -9.10907 -8.17320 -6.26551 1.44002 1.44408 1.55017 2.41145 2.77189 2.88471 3.16735 3.37895 3.48641 4.04805 4.11141 4.14283 4.30291 4.34898 4.49573 4.52128 4.57913 4.64534 4.70952 4.72842 4.85321 4.99010 5.00024 5.05790 5.06105 5.16296 5.19265 5.25661 5.29948 5.70988 6.03985 6.09969 6.14906 6.27825 6.55112 6.89360 7.43143 8.93586 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.030886 B = 0.007286 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.340194 B = 3842.165368 C = 4387.919104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.566 5.566 3 C 0.022 3.978 4 C 0.064 3.936 5 C 0.062 3.938 6 N -0.529 5.529 7 C 0.208 3.792 8 C -0.516 4.516 9 H 0.076 0.924 10 C 0.003 3.997 11 N -0.936 5.936 12 Si 0.961 3.039 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.260 1.260 16 C 0.021 3.979 17 C 0.064 3.936 18 O -0.409 6.409 19 C 0.055 3.945 20 H 0.031 0.969 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.025 0.975 29 H 0.059 0.941 30 H 0.002 0.998 31 H -0.034 1.034 32 H 0.262 0.738 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.703 7.952 -0.076 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.291 5.291 3 C -0.126 4.126 4 C -0.064 4.064 5 C -0.067 4.067 6 N -0.255 5.255 7 C 0.082 3.918 8 C -0.555 4.555 9 H 0.094 0.906 10 C -0.195 4.195 11 N -0.577 5.577 12 Si 0.786 3.214 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.184 1.184 16 C -0.089 4.089 17 C -0.012 4.012 18 O -0.328 6.328 19 C -0.021 4.021 20 H 0.050 0.950 21 H 0.099 0.901 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.020 0.980 31 H -0.016 1.016 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.772 7.376 -0.223 14.750 hybrid contribution 1.301 0.276 0.563 1.444 sum -11.471 7.652 0.340 13.793 Atomic orbital electron populations 1.22404 0.85722 1.02749 1.01211 1.61851 1.09259 1.14442 1.43502 1.22448 1.00550 0.88401 1.01208 1.22264 0.93825 0.98597 0.91724 1.22013 0.95474 0.94852 0.94312 1.62319 1.27129 1.34025 1.02042 1.19412 0.83481 0.93495 0.95451 1.21590 0.98320 1.14852 1.20692 0.90614 1.25860 0.96182 1.00115 0.97302 1.70086 1.05864 1.43193 1.38550 0.85504 0.77163 0.79295 0.79470 1.20106 1.21262 1.18354 1.24838 0.97442 0.95408 0.91179 1.24051 0.91822 0.94934 0.90403 1.89615 1.52267 1.63176 1.27721 1.24338 0.95314 1.01264 0.81208 0.94998 0.90146 0.91242 0.92432 0.90001 0.95048 0.90526 0.93033 0.95663 0.92196 0.97987 1.01583 0.92874 0.92799 0.89372 0.90145 0.87891 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.57 127.69 1.22 1.72 16 2 N -0.57 -13.85 5.02 -948.86 -4.76 -18.61 16 3 C 0.02 0.47 9.32 127.69 1.19 1.66 16 4 C 0.06 1.77 4.04 86.30 0.35 2.12 16 5 C 0.06 2.18 4.81 86.30 0.42 2.60 16 6 N -0.53 -21.89 4.46 -911.60 -4.06 -25.95 16 7 C 0.21 10.77 4.74 85.56 0.41 11.18 16 8 C -0.52 -27.92 7.93 25.60 0.20 -27.71 16 9 H 0.08 3.93 5.44 -2.91 -0.02 3.91 16 10 C 0.00 0.18 5.46 84.65 0.46 0.65 16 11 N -0.94 -55.65 13.29 21.45 0.28 -55.37 16 12 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 15 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 16 C 0.02 0.78 3.25 45.61 0.15 0.92 16 17 C 0.06 2.50 7.13 72.30 0.52 3.02 16 18 O -0.41 -14.75 12.46 -148.98 -1.86 -16.60 16 19 C 0.06 1.67 6.41 72.29 0.46 2.13 16 20 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 21 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 22 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 23 H 0.06 1.37 6.55 -2.39 -0.02 1.35 16 24 H 0.08 1.43 8.12 -2.39 -0.02 1.42 16 25 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.08 2.21 8.06 -2.39 -0.02 2.19 16 27 H 0.05 1.30 4.57 -2.39 -0.01 1.29 16 28 H 0.03 0.88 6.62 -2.39 -0.02 0.86 16 29 H 0.06 2.31 7.68 -2.39 -0.02 2.30 16 30 H 0.00 0.12 7.69 -2.38 -0.02 0.10 16 31 H -0.03 -1.92 8.04 -2.39 -0.02 -1.94 16 32 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.09 3.59 6.39 -2.38 -0.02 3.58 16 35 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.10 2.56 7.76 -2.39 -0.02 2.54 16 37 H 0.10 2.74 6.78 -2.39 -0.02 2.72 16 Total: -1.00 -61.70 289.58 -1.96 -63.66 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.03 Total: 9.23 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 5.38 Total: -1.73 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -8.54 Total: -99.93 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -1.86 Total: -16.60 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -61.70 -1.96 -63.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261106893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.909 kcal (2) G-P(sol) polarization free energy of solvation -61.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds