Wall clock time and date at job start Mon Mar 30 2020 03:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99785 * 2 1 4 4 C 1.52995 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47609 * 184.01373 * 4 3 2 6 6 C 1.50702 * 109.47134 * 304.01580 * 4 3 2 7 7 H 1.07995 * 120.00124 * 92.66989 * 6 4 3 8 8 C 1.37878 * 119.99668 * 272.67606 * 6 4 3 9 9 N 1.31509 * 120.00242 * 354.53801 * 8 6 4 10 10 Si 1.86796 * 119.99809 * 174.53974 * 8 6 4 11 11 H 1.48496 * 109.47452 * 89.99768 * 10 8 6 12 12 H 1.48506 * 109.47281 * 209.99957 * 10 8 6 13 13 H 1.48508 * 109.47361 * 329.99806 * 10 8 6 14 14 N 1.46907 * 109.47268 * 64.01579 * 4 3 2 15 15 C 1.46844 * 110.99948 * 63.44307 * 14 4 3 16 16 C 1.53038 * 109.51898 * 185.84220 * 15 14 4 17 17 C 1.53120 * 109.28109 * 300.81629 * 16 15 14 18 18 N 1.46895 * 109.52500 * 177.55975 * 17 16 15 19 19 C 1.53128 * 109.15665 * 57.65802 * 17 16 15 20 20 C 1.46846 * 110.99927 * 187.65429 * 14 4 3 21 21 H 1.08994 * 109.47441 * 300.00243 * 1 2 3 22 22 H 1.08997 * 109.46814 * 60.00860 * 1 2 3 23 23 H 1.09000 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47846 * 59.99071 * 3 2 1 25 25 H 1.09007 * 109.46598 * 299.99413 * 3 2 1 26 26 H 0.96998 * 120.00640 * 180.02562 * 9 8 6 27 27 H 1.08994 * 109.45992 * 65.82680 * 15 14 4 28 28 H 1.08995 * 109.46393 * 305.85495 * 15 14 4 29 29 H 1.09001 * 109.50877 * 60.76216 * 16 15 14 30 30 H 1.09003 * 109.50017 * 180.88173 * 16 15 14 31 31 H 1.08997 * 109.52281 * 297.75666 * 17 16 15 32 32 H 1.00901 * 111.00080 * 179.97438 * 18 17 16 33 33 H 1.00902 * 111.00456 * 303.95849 * 18 17 16 34 34 H 1.09000 * 109.49988 * 182.40524 * 19 17 16 35 35 H 1.08999 * 109.50050 * 62.28341 * 19 17 16 36 36 H 1.09001 * 109.46480 * 294.17613 * 20 14 4 37 37 H 1.09002 * 109.46544 * 54.14265 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1780 0.0726 6 6 3.9729 0.3529 1.1787 7 1 4.1104 -0.7123 1.0663 8 6 4.1976 0.9520 2.4000 9 7 4.1350 2.2608 2.5119 10 14 4.5909 -0.0956 3.8958 11 1 6.0606 -0.2826 3.9965 12 1 4.0932 0.5824 5.1197 13 1 3.9316 -1.4194 3.7603 14 7 3.9762 0.5409 -1.2441 15 6 3.6383 1.3654 -2.4113 16 6 3.9790 0.6015 -3.6928 17 6 5.4725 0.2638 -3.6983 18 7 5.7942 -0.5202 -4.8982 19 6 5.8073 -0.5539 -2.4477 20 6 5.4136 0.2435 -1.2023 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6885 1.8465 0.8898 25 1 1.6886 1.8463 -0.8901 26 1 4.2934 2.6823 3.3711 27 1 4.2098 2.2929 -2.3784 28 1 2.5728 1.5949 -2.3976 29 1 3.3975 -0.3196 -3.7331 30 1 3.7426 1.2199 -4.5588 31 1 6.0543 1.1855 -3.6974 32 1 6.7751 -0.7549 -4.9245 33 1 5.2220 -1.3495 -4.9525 34 1 6.8772 -0.7610 -2.4241 35 1 5.2545 -1.4931 -2.4683 36 1 5.9769 1.1763 -1.1751 37 1 5.6376 -0.3419 -0.3105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261119599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:17 Heat of formation + Delta-G solvation = -45.999531 kcal Electronic energy + Delta-G solvation = -17050.588075 eV Core-core repulsion = 14441.598268 eV Total energy + Delta-G solvation = -2608.989807 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.62768 -36.73085 -34.67110 -32.55360 -30.27941 -30.07558 -27.38467 -25.74055 -24.57056 -22.58379 -22.00631 -20.00405 -19.14285 -16.46376 -15.87618 -15.49623 -15.03275 -14.52308 -14.44796 -14.25346 -13.80673 -13.54371 -13.08817 -12.90334 -12.55611 -11.77446 -11.69385 -11.40435 -11.09015 -10.88880 -10.76892 -10.63854 -10.54836 -10.31876 -10.18367 -9.95234 -9.62284 -8.99786 -8.54402 -8.47438 -8.37405 -7.07120 -6.04517 -4.03628 3.30734 3.37739 3.44475 4.42384 4.74641 4.91425 4.97941 5.23213 5.30385 5.37167 5.63945 5.81197 5.91261 5.98407 6.00399 6.11387 6.15774 6.21020 6.24670 6.31426 6.42112 6.54592 6.59738 6.72387 6.80328 6.85921 7.18855 7.30081 7.39560 7.57905 7.87372 7.98480 8.23935 8.33797 8.67817 9.06962 9.59800 11.04830 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.009349 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.236881 B = 2994.401673 C = 3688.625772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.085 3.915 4 C 0.207 3.793 5 H 0.040 0.960 6 C -0.483 4.483 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.902 5.902 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.272 1.272 14 N -0.526 5.526 15 C 0.052 3.948 16 C -0.102 4.102 17 C 0.088 3.912 18 N -0.848 5.848 19 C -0.148 4.148 20 C 0.074 3.926 21 H 0.028 0.972 22 H 0.023 0.977 23 H 0.071 0.929 24 H 0.043 0.957 25 H 0.011 0.989 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.335 0.665 33 H 0.337 0.663 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.017 0.983 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 -2.866 -8.748 9.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.007 3.993 4 C 0.101 3.899 5 H 0.057 0.943 6 C -0.522 4.522 7 H 0.083 0.917 8 C -0.144 4.144 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.197 1.197 14 N -0.252 5.252 15 C -0.078 4.078 16 C -0.141 4.141 17 C -0.023 4.023 18 N -0.375 5.375 19 C -0.188 4.188 20 C -0.055 4.055 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.089 0.911 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.919 -2.677 -9.069 9.500 hybrid contribution 0.600 -0.123 1.725 1.831 sum -0.318 -2.800 -7.344 7.866 Atomic orbital electron populations 1.22580 0.84728 1.01001 0.98389 1.88090 1.15979 1.28612 1.94844 1.22762 0.96716 0.83185 0.96609 1.19440 0.88897 0.95194 0.86392 0.94276 1.20895 1.43990 0.94540 0.92791 0.91741 1.24975 0.95353 0.94896 0.99134 1.69918 1.50744 1.08486 1.24967 0.86540 0.78305 0.80690 0.82184 1.20832 1.21364 1.19656 1.61967 1.14670 1.45779 1.02764 1.22057 1.00290 0.94101 0.91309 1.21539 0.94666 1.00817 0.97028 1.21533 0.97036 0.96367 0.87354 1.59002 1.09592 1.27288 1.41652 1.22458 0.99611 1.00071 0.96653 1.21777 0.88656 0.97909 0.97180 0.95380 0.95799 0.91066 0.93868 0.97081 0.92942 0.96264 0.91335 0.91657 0.92104 0.90976 0.85315 0.85077 0.92865 0.91690 0.96437 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.66 16 2 O -0.36 -8.23 10.14 -35.23 -0.36 -8.59 16 3 C 0.08 1.98 5.40 37.16 0.20 2.18 16 4 C 0.21 5.15 1.90 -68.86 -0.13 5.02 16 5 H 0.04 1.09 7.46 -51.93 -0.39 0.70 16 6 C -0.48 -13.14 6.42 -34.44 -0.22 -13.36 16 7 H 0.06 1.81 7.41 -52.49 -0.39 1.42 16 8 C 0.06 1.58 5.45 -17.82 -0.10 1.48 16 9 N -0.90 -25.73 12.88 55.43 0.71 -25.02 16 10 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 N -0.53 -11.40 4.45 -228.08 -1.02 -12.41 16 15 C 0.05 0.96 5.28 -3.84 -0.02 0.94 16 16 C -0.10 -1.61 5.64 -26.65 -0.15 -1.76 16 17 C 0.09 1.31 3.32 -67.59 -0.22 1.09 16 18 N -0.85 -10.57 9.26 -4.56 -0.04 -10.61 16 19 C -0.15 -2.38 5.67 -26.65 -0.15 -2.54 16 20 C 0.07 1.49 5.18 -3.83 -0.02 1.48 16 21 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.01 0.24 6.18 -51.93 -0.32 -0.08 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 1.28 6.04 -51.93 -0.31 0.97 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.34 3.62 9.04 -39.29 -0.36 3.27 16 33 H 0.34 3.92 8.98 -39.29 -0.35 3.56 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 1.98 6.40 -51.93 -0.33 1.65 16 LS Contribution 292.26 15.07 4.40 4.40 Total: -1.00 -28.89 292.26 -7.26 -36.14 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.24 Total: 3.41 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 0.30 Total: -3.82 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.34 Total: -48.04 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.36 Total: -8.59 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.89 -7.26 -36.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.857 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds