Wall clock time and date at job start Mon Mar 30 2020 03:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99785 * 2 1 4 4 C 1.52995 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47609 * 184.01373 * 4 3 2 6 6 C 1.50702 * 109.47134 * 304.01580 * 4 3 2 7 7 H 1.07995 * 120.00124 * 92.66989 * 6 4 3 8 8 C 1.37878 * 119.99668 * 272.67606 * 6 4 3 9 9 N 1.31509 * 120.00242 * 354.53801 * 8 6 4 10 10 Si 1.86796 * 119.99809 * 174.53974 * 8 6 4 11 11 H 1.48496 * 109.47452 * 89.99768 * 10 8 6 12 12 H 1.48506 * 109.47281 * 209.99957 * 10 8 6 13 13 H 1.48508 * 109.47361 * 329.99806 * 10 8 6 14 14 N 1.46907 * 109.47268 * 64.01579 * 4 3 2 15 15 C 1.46844 * 110.99948 * 63.44307 * 14 4 3 16 16 C 1.53038 * 109.51898 * 185.84220 * 15 14 4 17 17 C 1.53120 * 109.28109 * 300.81629 * 16 15 14 18 18 N 1.46895 * 109.52500 * 177.55975 * 17 16 15 19 19 C 1.53128 * 109.15665 * 57.65802 * 17 16 15 20 20 C 1.46846 * 110.99927 * 187.65429 * 14 4 3 21 21 H 1.08994 * 109.47441 * 300.00243 * 1 2 3 22 22 H 1.08997 * 109.46814 * 60.00860 * 1 2 3 23 23 H 1.09000 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47846 * 59.99071 * 3 2 1 25 25 H 1.09007 * 109.46598 * 299.99413 * 3 2 1 26 26 H 0.96998 * 120.00640 * 180.02562 * 9 8 6 27 27 H 1.08994 * 109.45992 * 65.82680 * 15 14 4 28 28 H 1.08995 * 109.46393 * 305.85495 * 15 14 4 29 29 H 1.09001 * 109.50877 * 60.76216 * 16 15 14 30 30 H 1.09003 * 109.50017 * 180.88173 * 16 15 14 31 31 H 1.08997 * 109.52281 * 297.75666 * 17 16 15 32 32 H 1.00901 * 111.00080 * 179.97438 * 18 17 16 33 33 H 1.00902 * 111.00456 * 303.95849 * 18 17 16 34 34 H 1.09000 * 109.49988 * 182.40524 * 19 17 16 35 35 H 1.08999 * 109.50050 * 62.28341 * 19 17 16 36 36 H 1.09001 * 109.46480 * 294.17613 * 20 14 4 37 37 H 1.09002 * 109.46544 * 54.14265 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1780 0.0726 6 6 3.9729 0.3529 1.1787 7 1 4.1104 -0.7123 1.0663 8 6 4.1976 0.9520 2.4000 9 7 4.1350 2.2608 2.5119 10 14 4.5909 -0.0956 3.8958 11 1 6.0606 -0.2826 3.9965 12 1 4.0932 0.5824 5.1197 13 1 3.9316 -1.4194 3.7603 14 7 3.9762 0.5409 -1.2441 15 6 3.6383 1.3654 -2.4113 16 6 3.9790 0.6015 -3.6928 17 6 5.4725 0.2638 -3.6983 18 7 5.7942 -0.5202 -4.8982 19 6 5.8073 -0.5539 -2.4477 20 6 5.4136 0.2435 -1.2023 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6885 1.8465 0.8898 25 1 1.6886 1.8463 -0.8901 26 1 4.2934 2.6823 3.3711 27 1 4.2098 2.2929 -2.3784 28 1 2.5728 1.5949 -2.3976 29 1 3.3975 -0.3196 -3.7331 30 1 3.7426 1.2199 -4.5588 31 1 6.0543 1.1855 -3.6974 32 1 6.7751 -0.7549 -4.9245 33 1 5.2220 -1.3495 -4.9525 34 1 6.8772 -0.7610 -2.4241 35 1 5.2545 -1.4931 -2.4683 36 1 5.9769 1.1763 -1.1751 37 1 5.6376 -0.3419 -0.3105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261119599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:16 Heat of formation + Delta-G solvation = -68.317437 kcal Electronic energy + Delta-G solvation = -17051.555852 eV Core-core repulsion = 14441.598268 eV Total energy + Delta-G solvation = -2609.957584 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18115 -38.37834 -36.23151 -34.45811 -31.75671 -31.66831 -28.90129 -27.52589 -26.32553 -24.12226 -23.52203 -21.71359 -20.63201 -18.49121 -17.53483 -16.84709 -16.60897 -16.35567 -16.06783 -15.79011 -15.38117 -14.96839 -14.62047 -14.44004 -14.09329 -13.47656 -13.41074 -13.07343 -12.74537 -12.63863 -12.48202 -12.22113 -12.11451 -11.94661 -11.73294 -11.65457 -11.24202 -10.88393 -10.60531 -10.23134 -9.52677 -8.84647 -8.15145 -6.20209 1.38586 1.40598 1.52173 2.41679 3.12180 3.28053 3.36792 3.66284 3.92470 4.03079 4.32597 4.38119 4.39675 4.53042 4.56952 4.61890 4.68254 4.79978 4.84184 4.87458 4.91872 5.02262 5.07843 5.13480 5.21690 5.29823 5.43758 5.50438 5.72961 6.09584 6.26014 6.38250 6.62470 6.67647 6.84878 6.95139 7.46506 8.93613 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.009349 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.236881 B = 2994.401673 C = 3688.625772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.384 6.384 3 C 0.097 3.903 4 C 0.208 3.792 5 H 0.002 0.998 6 C -0.488 4.488 7 H 0.051 0.949 8 C 0.010 3.990 9 N -0.931 5.931 10 Si 0.954 3.046 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.271 1.271 14 N -0.530 5.530 15 C 0.051 3.949 16 C -0.093 4.093 17 C 0.097 3.903 18 N -0.841 5.841 19 C -0.135 4.135 20 C 0.074 3.926 21 H 0.030 0.970 22 H 0.045 0.955 23 H 0.094 0.906 24 H 0.018 0.982 25 H 0.032 0.968 26 H 0.262 0.738 27 H 0.012 0.988 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.348 0.652 33 H 0.345 0.655 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.003 0.997 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -4.019 -10.115 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.303 6.303 3 C 0.019 3.981 4 C 0.101 3.899 5 H 0.020 0.980 6 C -0.526 4.526 7 H 0.069 0.931 8 C -0.188 4.188 9 N -0.572 5.572 10 Si 0.780 3.220 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.196 1.196 14 N -0.255 5.255 15 C -0.078 4.078 16 C -0.131 4.131 17 C -0.015 4.015 18 N -0.370 5.370 19 C -0.175 4.175 20 C -0.055 4.055 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.113 0.887 24 H 0.036 0.964 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.021 0.979 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.063 -3.848 -10.460 11.195 hybrid contribution 0.607 0.224 2.097 2.194 sum -0.456 -3.624 -8.363 9.126 Atomic orbital electron populations 1.22836 0.81861 1.02989 0.99539 1.88017 1.19159 1.28087 1.95039 1.22443 0.95687 0.83618 0.96341 1.19233 0.90023 0.93085 0.87534 0.98020 1.21021 1.43677 0.93962 0.93967 0.93125 1.25678 0.95535 0.95924 1.01674 1.70031 1.51897 1.09789 1.25484 0.85616 0.78368 0.79045 0.79019 1.20024 1.20925 1.19579 1.61956 1.15353 1.45822 1.02378 1.22135 1.00156 0.94001 0.91524 1.21457 0.95357 1.00622 0.95680 1.21353 0.96275 0.96351 0.87526 1.58936 1.10759 1.27691 1.39600 1.22379 1.00779 0.99306 0.95058 1.21761 0.87921 0.97402 0.98431 0.95156 0.93629 0.88708 0.96404 0.94972 0.92950 0.96935 0.91367 0.91635 0.90279 0.91407 0.83890 0.84174 0.90868 0.91782 0.97906 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.82 11.01 113.37 1.25 2.07 16 2 O -0.38 -17.52 10.14 -148.98 -1.51 -19.03 16 3 C 0.10 4.57 5.40 71.98 0.39 4.96 16 4 C 0.21 10.68 1.90 44.17 0.08 10.76 16 5 H 0.00 0.13 7.46 -2.38 -0.02 0.11 16 6 C -0.49 -27.21 6.42 25.60 0.16 -27.05 16 7 H 0.05 2.91 7.41 -2.91 -0.02 2.89 16 8 C 0.01 0.55 5.45 84.66 0.46 1.01 16 9 N -0.93 -54.62 12.88 21.45 0.28 -54.34 16 10 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 14 N -0.53 -23.13 4.45 -875.51 -3.90 -27.03 16 15 C 0.05 1.85 5.28 86.33 0.46 2.31 16 16 C -0.09 -2.72 5.64 30.65 0.17 -2.55 16 17 C 0.10 2.65 3.32 45.00 0.15 2.79 16 18 N -0.84 -18.18 9.26 -168.34 -1.56 -19.74 16 19 C -0.14 -4.15 5.67 30.65 0.17 -3.97 16 20 C 0.07 3.03 5.18 86.33 0.45 3.48 16 21 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 24 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 25 H 0.03 1.37 6.18 -2.38 -0.01 1.35 16 26 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 27 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 2.48 6.04 -2.39 -0.01 2.46 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.35 6.31 9.04 -89.69 -0.81 5.50 16 33 H 0.35 6.81 8.98 -89.69 -0.81 6.01 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.06 2.80 6.40 -2.39 -0.02 2.78 16 Total: -1.00 -62.83 292.26 -1.48 -64.31 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -0.56 Total: 15.27 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 3.75 Total: -6.18 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -5.18 Total: -101.12 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -1.51 Total: -19.03 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -62.83 -1.48 -64.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.007 kcal (2) G-P(sol) polarization free energy of solvation -62.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds