Wall clock time and date at job start Mon Mar 30 2020 03:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42899 * 113.99972 * 2 1 4 4 C 1.53002 * 109.47417 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47192 * 175.00509 * 4 3 2 6 6 C 1.50703 * 109.47093 * 54.99705 * 4 3 2 7 7 H 1.07997 * 119.99919 * 240.00037 * 6 4 3 8 8 C 1.37873 * 119.99377 * 60.00590 * 6 4 3 9 9 N 1.31517 * 120.00423 * 359.97438 * 8 6 4 10 10 Si 1.86800 * 119.99633 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47538 * 59.99849 * 10 8 6 12 12 H 1.48500 * 109.47263 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46922 * 299.99339 * 10 8 6 14 14 N 1.46909 * 109.46665 * 295.00266 * 4 3 2 15 15 C 1.46846 * 111.00243 * 66.04629 * 14 4 3 16 16 C 1.53036 * 109.52162 * 174.15828 * 15 14 4 17 17 C 1.53118 * 109.28007 * 59.18140 * 16 15 14 18 18 C 1.53123 * 109.15585 * 302.34276 * 17 16 15 19 19 H 1.08997 * 109.50390 * 297.67422 * 18 17 16 20 20 N 1.46901 * 109.50078 * 177.59872 * 18 17 16 21 21 C 1.46846 * 111.00162 * 301.83101 * 14 4 3 22 22 H 1.08998 * 109.47417 * 60.00127 * 1 2 3 23 23 H 1.09000 * 109.47263 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47595 * 299.99512 * 1 2 3 25 25 H 1.09001 * 109.47031 * 60.00256 * 3 2 1 26 26 H 1.09000 * 109.47274 * 300.00488 * 3 2 1 27 27 H 0.96998 * 120.00099 * 179.97438 * 9 8 6 28 28 H 1.08998 * 109.45759 * 294.17597 * 15 14 4 29 29 H 1.09003 * 109.46299 * 54.15067 * 15 14 4 30 30 H 1.09008 * 109.49869 * 179.11730 * 16 15 14 31 31 H 1.09000 * 109.50168 * 299.23597 * 16 15 14 32 32 H 1.08993 * 109.52399 * 62.24659 * 17 16 15 33 33 H 1.08997 * 109.52156 * 182.37709 * 17 16 15 34 34 H 1.00893 * 111.00235 * 59.99703 * 20 18 17 35 35 H 1.00899 * 111.00098 * 183.95881 * 20 18 17 36 36 H 1.08999 * 109.46373 * 305.86398 * 21 14 4 37 37 H 1.08998 * 109.45881 * 65.82485 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9783 2.1766 -0.0901 6 6 3.9714 0.3328 -1.1648 7 1 4.5220 -0.5796 -0.9899 8 6 3.6672 0.7184 -2.4531 9 7 2.9963 1.8294 -2.6660 10 14 4.2070 -0.3378 -3.8962 11 1 3.6030 -1.6889 -3.7740 12 1 3.7605 0.2917 -5.1648 13 1 5.6873 -0.4556 -3.8970 14 7 3.9778 0.5623 1.2544 15 6 3.5172 -0.8293 1.3426 16 6 4.1157 -1.4881 2.5875 17 6 3.6814 -0.7073 3.8310 18 6 4.1311 0.7497 3.6919 19 1 5.2190 0.7912 3.6378 20 7 3.6683 1.5189 4.8547 21 6 3.5322 1.3437 2.4151 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6885 1.8463 0.8900 26 1 1.6884 1.8464 -0.8899 27 1 2.7827 2.1008 -3.5724 28 1 2.4294 -0.8482 1.4090 29 1 3.8363 -1.3745 0.4543 30 1 3.7611 -2.5163 2.6612 31 1 5.2033 -1.4819 2.5152 32 1 2.5962 -0.7462 3.9249 33 1 4.1397 -1.1481 4.7163 34 1 4.0480 1.1438 5.7109 35 1 3.8967 2.4967 4.7556 36 1 3.8620 2.3768 2.3056 37 1 2.4443 1.3146 2.4765 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261139804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:20 Heat of formation + Delta-G solvation = -38.119648 kcal Electronic energy + Delta-G solvation = -17404.936982 eV Core-core repulsion = 14796.288872 eV Total energy + Delta-G solvation = -2608.648110 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.78829 -36.55467 -34.31953 -32.63831 -31.57140 -28.30060 -27.45442 -25.85222 -24.44320 -23.28647 -21.60849 -20.08554 -18.77807 -16.36856 -15.64359 -15.31808 -15.04990 -14.76318 -14.51037 -14.24010 -13.90801 -13.69836 -12.80939 -12.62974 -12.37918 -11.89813 -11.56841 -11.24093 -11.10331 -10.84608 -10.73775 -10.64924 -10.48489 -10.20169 -10.15339 -9.75474 -9.46617 -8.94552 -8.57758 -8.46861 -8.21094 -6.96455 -5.97840 -3.98062 3.37529 3.40344 3.44315 4.43782 4.62044 4.97800 5.18597 5.29570 5.35913 5.46556 5.69240 5.84523 5.97233 6.03450 6.10956 6.12361 6.27150 6.36287 6.38456 6.42583 6.52099 6.56826 6.61949 6.88226 6.99144 7.23870 7.31161 7.35304 7.45245 7.59976 7.87336 8.13035 8.31896 8.36703 8.69846 9.03078 9.65237 11.10257 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.030530 B = 0.009007 C = 0.008449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.896389 B = 3107.846328 C = 3313.381240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.035 3.965 4 C 0.219 3.781 5 H 0.053 0.947 6 C -0.483 4.483 7 H 0.065 0.935 8 C 0.060 3.940 9 N -0.902 5.902 10 Si 0.898 3.102 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.278 1.278 14 N -0.531 5.531 15 C 0.057 3.943 16 C -0.120 4.120 17 C -0.107 4.107 18 C 0.093 3.907 19 H 0.038 0.962 20 N -0.850 5.850 21 C 0.062 3.938 22 H 0.030 0.970 23 H 0.068 0.932 24 H 0.021 0.979 25 H 0.003 0.997 26 H 0.080 0.920 27 H 0.260 0.740 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.335 0.665 35 H 0.338 0.662 36 H 0.057 0.943 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 -2.132 9.845 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C -0.043 4.043 4 C 0.112 3.888 5 H 0.070 0.930 6 C -0.522 4.522 7 H 0.083 0.917 8 C -0.140 4.140 9 N -0.542 5.542 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.204 1.204 14 N -0.255 5.255 15 C -0.071 4.071 16 C -0.158 4.158 17 C -0.145 4.145 18 C -0.018 4.018 19 H 0.056 0.944 20 N -0.379 5.379 21 C -0.067 4.067 22 H 0.049 0.951 23 H 0.086 0.914 24 H 0.039 0.961 25 H 0.021 0.979 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.076 0.924 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.043 -2.430 9.459 9.821 hybrid contribution 0.041 0.086 -0.676 0.683 sum -1.003 -2.344 8.783 9.145 Atomic orbital electron populations 1.22538 0.84991 1.00672 0.98487 1.88050 1.16174 1.29244 1.94656 1.23486 0.98694 0.83617 0.98546 1.19426 0.87277 0.96054 0.86000 0.92982 1.20941 1.34057 1.07717 0.89462 0.91736 1.24864 0.95192 0.95179 0.98808 1.69835 1.40504 1.22895 1.20995 0.86555 0.78862 0.80536 0.81399 1.20331 1.21571 1.20369 1.62110 1.59544 1.01976 1.01851 1.22207 0.98646 0.89651 0.96548 1.21686 1.00946 0.97976 0.95237 1.21540 1.01111 0.94292 0.97559 1.21352 0.96750 0.93460 0.90201 0.94359 1.58698 1.68032 1.06720 1.04477 1.21918 0.97624 0.96888 0.90290 0.95117 0.91354 0.96052 0.97872 0.90220 0.93041 0.92691 0.89892 0.92490 0.92178 0.91944 0.93336 0.85278 0.84977 0.92409 0.94796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 101.05 1.11 1.69 16 2 O -0.36 -8.43 6.86 -35.23 -0.24 -8.68 16 3 C 0.03 0.84 4.92 37.16 0.18 1.02 16 4 C 0.22 5.49 2.42 -68.86 -0.17 5.33 16 5 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 6 C -0.48 -13.15 7.39 -34.44 -0.25 -13.41 16 7 H 0.06 1.77 6.26 -52.49 -0.33 1.44 16 8 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 9 N -0.90 -25.49 11.37 55.43 0.63 -24.85 16 10 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 N -0.53 -11.58 4.69 -228.08 -1.07 -12.65 16 15 C 0.06 1.18 4.35 -3.84 -0.02 1.17 16 16 C -0.12 -2.02 6.09 -26.65 -0.16 -2.18 16 17 C -0.11 -1.65 5.58 -26.61 -0.15 -1.80 16 18 C 0.09 1.48 3.41 -67.63 -0.23 1.25 16 19 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 20 N -0.85 -11.18 9.25 -4.60 -0.04 -11.23 16 21 C 0.06 1.18 4.39 -3.84 -0.02 1.16 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.00 0.07 6.24 -51.93 -0.32 -0.25 16 26 H 0.08 2.12 6.22 -51.93 -0.32 1.80 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.06 1.21 5.54 -51.93 -0.29 0.92 16 29 H 0.08 1.90 5.91 -51.93 -0.31 1.59 16 30 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.34 3.67 9.04 -39.30 -0.36 3.32 16 35 H 0.34 4.03 9.00 -39.29 -0.35 3.67 16 36 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 37 H 0.03 0.70 6.50 -51.93 -0.34 0.36 16 LS Contribution 282.30 15.07 4.25 4.25 Total: -1.00 -28.43 282.30 -7.26 -35.69 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.98 Total: 5.05 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 0.20 Total: -4.22 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.48 Total: -48.73 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.24 Total: -8.68 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.43 -7.26 -35.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.428 kcal (2) G-P(sol) polarization free energy of solvation -28.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds