Wall clock time and date at job start Mon Mar 30 2020 03:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42899 * 113.99972 * 2 1 4 4 C 1.53002 * 109.47417 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47192 * 175.00509 * 4 3 2 6 6 C 1.50703 * 109.47093 * 54.99705 * 4 3 2 7 7 H 1.07997 * 119.99919 * 240.00037 * 6 4 3 8 8 C 1.37873 * 119.99377 * 60.00590 * 6 4 3 9 9 N 1.31517 * 120.00423 * 359.97438 * 8 6 4 10 10 Si 1.86800 * 119.99633 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47538 * 59.99849 * 10 8 6 12 12 H 1.48500 * 109.47263 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46922 * 299.99339 * 10 8 6 14 14 N 1.46909 * 109.46665 * 295.00266 * 4 3 2 15 15 C 1.46846 * 111.00243 * 66.04629 * 14 4 3 16 16 C 1.53036 * 109.52162 * 174.15828 * 15 14 4 17 17 C 1.53118 * 109.28007 * 59.18140 * 16 15 14 18 18 C 1.53123 * 109.15585 * 302.34276 * 17 16 15 19 19 H 1.08997 * 109.50390 * 297.67422 * 18 17 16 20 20 N 1.46901 * 109.50078 * 177.59872 * 18 17 16 21 21 C 1.46846 * 111.00162 * 301.83101 * 14 4 3 22 22 H 1.08998 * 109.47417 * 60.00127 * 1 2 3 23 23 H 1.09000 * 109.47263 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47595 * 299.99512 * 1 2 3 25 25 H 1.09001 * 109.47031 * 60.00256 * 3 2 1 26 26 H 1.09000 * 109.47274 * 300.00488 * 3 2 1 27 27 H 0.96998 * 120.00099 * 179.97438 * 9 8 6 28 28 H 1.08998 * 109.45759 * 294.17597 * 15 14 4 29 29 H 1.09003 * 109.46299 * 54.15067 * 15 14 4 30 30 H 1.09008 * 109.49869 * 179.11730 * 16 15 14 31 31 H 1.09000 * 109.50168 * 299.23597 * 16 15 14 32 32 H 1.08993 * 109.52399 * 62.24659 * 17 16 15 33 33 H 1.08997 * 109.52156 * 182.37709 * 17 16 15 34 34 H 1.00893 * 111.00235 * 59.99703 * 20 18 17 35 35 H 1.00899 * 111.00098 * 183.95881 * 20 18 17 36 36 H 1.08999 * 109.46373 * 305.86398 * 21 14 4 37 37 H 1.08998 * 109.45881 * 65.82485 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9783 2.1766 -0.0901 6 6 3.9714 0.3328 -1.1648 7 1 4.5220 -0.5796 -0.9899 8 6 3.6672 0.7184 -2.4531 9 7 2.9963 1.8294 -2.6660 10 14 4.2070 -0.3378 -3.8962 11 1 3.6030 -1.6889 -3.7740 12 1 3.7605 0.2917 -5.1648 13 1 5.6873 -0.4556 -3.8970 14 7 3.9778 0.5623 1.2544 15 6 3.5172 -0.8293 1.3426 16 6 4.1157 -1.4881 2.5875 17 6 3.6814 -0.7073 3.8310 18 6 4.1311 0.7497 3.6919 19 1 5.2190 0.7912 3.6378 20 7 3.6683 1.5189 4.8547 21 6 3.5322 1.3437 2.4151 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6885 1.8463 0.8900 26 1 1.6884 1.8464 -0.8899 27 1 2.7827 2.1008 -3.5724 28 1 2.4294 -0.8482 1.4090 29 1 3.8363 -1.3745 0.4543 30 1 3.7611 -2.5163 2.6612 31 1 5.2033 -1.4819 2.5152 32 1 2.5962 -0.7462 3.9249 33 1 4.1397 -1.1481 4.7163 34 1 4.0480 1.1438 5.7109 35 1 3.8967 2.4967 4.7556 36 1 3.8620 2.3768 2.3056 37 1 2.4443 1.3146 2.4765 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261139804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:20 Heat of formation + Delta-G solvation = -59.787322 kcal Electronic energy + Delta-G solvation = -17405.876562 eV Core-core repulsion = 14796.288872 eV Total energy + Delta-G solvation = -2609.587690 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.41563 -38.20218 -35.96279 -34.39312 -33.15617 -30.02295 -28.93327 -27.59892 -26.32454 -24.89774 -23.08626 -21.83445 -20.30002 -18.36600 -17.40204 -16.93704 -16.49428 -16.18229 -16.15217 -15.98097 -15.50074 -15.28768 -14.42820 -14.28893 -13.87801 -13.51483 -13.25481 -12.95427 -12.72433 -12.61435 -12.52967 -12.42145 -12.15877 -12.00326 -11.59579 -11.47575 -11.00912 -10.86296 -10.56998 -10.13921 -9.57573 -8.72335 -8.08006 -6.14415 1.43377 1.45303 1.51924 2.45542 3.15427 3.23043 3.34990 3.80270 3.95958 4.09767 4.32578 4.38354 4.49084 4.53997 4.59766 4.70223 4.72412 4.79077 4.88188 4.96637 5.03828 5.10463 5.14199 5.26188 5.29342 5.34424 5.55790 5.67834 5.76425 6.13819 6.26257 6.49141 6.57422 6.67335 6.86154 6.93752 7.51964 8.98657 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.030530 B = 0.009007 C = 0.008449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.896389 B = 3107.846328 C = 3313.381240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.381 6.381 3 C 0.052 3.948 4 C 0.219 3.781 5 H 0.022 0.978 6 C -0.494 4.494 7 H 0.056 0.944 8 C 0.014 3.986 9 N -0.925 5.925 10 Si 0.955 3.045 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.272 1.272 14 N -0.536 5.536 15 C 0.062 3.938 16 C -0.113 4.113 17 C -0.101 4.101 18 C 0.102 3.898 19 H 0.037 0.963 20 N -0.848 5.848 21 C 0.065 3.935 22 H 0.025 0.975 23 H 0.094 0.906 24 H 0.038 0.962 25 H 0.013 0.987 26 H 0.050 0.950 27 H 0.259 0.741 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.353 0.647 35 H 0.346 0.654 36 H 0.053 0.947 37 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -3.260 11.294 11.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.300 6.300 3 C -0.026 4.026 4 C 0.112 3.888 5 H 0.039 0.961 6 C -0.532 4.532 7 H 0.075 0.925 8 C -0.184 4.184 9 N -0.566 5.566 10 Si 0.782 3.218 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.198 1.198 14 N -0.260 5.260 15 C -0.066 4.066 16 C -0.151 4.151 17 C -0.139 4.139 18 C -0.009 4.009 19 H 0.055 0.945 20 N -0.380 5.380 21 C -0.064 4.064 22 H 0.043 0.957 23 H 0.113 0.887 24 H 0.057 0.943 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.167 0.833 35 H 0.159 0.841 36 H 0.071 0.929 37 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.964 -3.561 10.938 11.543 hybrid contribution -0.027 0.454 -1.085 1.176 sum -0.991 -3.108 9.853 10.379 Atomic orbital electron populations 1.22754 0.82667 1.02643 0.99045 1.88011 1.18740 1.28493 1.94758 1.23115 0.98091 0.83951 0.97465 1.19193 0.87885 0.94415 0.87341 0.96057 1.21146 1.33904 1.07608 0.90539 0.92539 1.25574 0.95377 0.96281 1.01127 1.69965 1.41279 1.24056 1.21290 0.85648 0.78650 0.78960 0.78558 1.20127 1.21155 1.19756 1.62060 1.59673 1.02777 1.01536 1.22109 0.98094 0.88861 0.97490 1.21625 1.00734 0.98909 0.93836 1.21496 1.00839 0.93698 0.97881 1.21162 0.96322 0.93979 0.89443 0.94469 1.58602 1.68032 1.07124 1.04227 1.21943 0.96878 0.96695 0.90921 0.95653 0.88711 0.94308 0.96909 0.93162 0.93160 0.93871 0.92749 0.90410 0.92086 0.92635 0.90272 0.83341 0.84086 0.92864 0.96205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 11.01 113.37 1.25 2.19 16 2 O -0.38 -17.79 6.86 -148.98 -1.02 -18.81 16 3 C 0.05 2.58 4.92 71.98 0.35 2.93 16 4 C 0.22 11.31 2.42 44.17 0.11 11.42 16 5 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 6 C -0.49 -27.47 7.39 25.60 0.19 -27.28 16 7 H 0.06 3.17 6.26 -2.91 -0.02 3.16 16 8 C 0.01 0.79 5.30 84.65 0.45 1.24 16 9 N -0.93 -53.42 11.37 21.45 0.24 -53.18 16 10 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 14 N -0.54 -23.60 4.69 -875.50 -4.10 -27.70 16 15 C 0.06 2.55 4.35 86.33 0.38 2.93 16 16 C -0.11 -3.54 6.09 30.65 0.19 -3.36 16 17 C -0.10 -2.81 5.58 30.67 0.17 -2.64 16 18 C 0.10 3.02 3.41 44.97 0.15 3.18 16 19 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 20 N -0.85 -19.98 9.25 -168.47 -1.56 -21.54 16 21 C 0.06 2.43 4.39 86.32 0.38 2.80 16 22 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 24 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.01 0.60 6.24 -2.39 -0.01 0.59 16 26 H 0.05 2.77 6.22 -2.39 -0.01 2.75 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.04 1.88 5.54 -2.39 -0.01 1.87 16 29 H 0.05 2.52 5.91 -2.39 -0.01 2.51 16 30 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.35 6.47 9.04 -89.70 -0.81 5.66 16 35 H 0.35 7.42 9.00 -89.69 -0.81 6.62 16 36 H 0.05 2.01 8.12 -2.39 -0.02 1.99 16 37 H 0.02 0.80 6.50 -2.39 -0.02 0.79 16 Total: -1.00 -61.49 282.30 -1.36 -62.84 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.55 Total: 18.20 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 3.61 Total: -6.59 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -5.42 Total: -102.42 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -1.02 Total: -18.81 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -61.49 -1.36 -62.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.054 kcal (2) G-P(sol) polarization free energy of solvation -61.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds