Wall clock time and date at job start Mon Mar 30 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00248 * 2 1 4 4 C 1.53002 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47030 * 176.00211 * 4 3 2 6 6 C 1.50692 * 109.47016 * 55.99693 * 4 3 2 7 7 H 1.08001 * 120.00308 * 239.99982 * 6 4 3 8 8 C 1.37880 * 120.00041 * 60.27672 * 6 4 3 9 9 N 1.31515 * 120.00007 * 359.71945 * 8 6 4 10 10 Si 1.86801 * 120.00336 * 179.72226 * 8 6 4 11 11 H 1.48504 * 109.46755 * 59.99612 * 10 8 6 12 12 H 1.48497 * 109.47310 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47259 * 300.00399 * 10 8 6 14 14 N 1.46905 * 109.46942 * 295.99829 * 4 3 2 15 15 C 1.46848 * 110.99547 * 174.08387 * 14 4 3 16 16 C 1.53039 * 109.52045 * 185.84096 * 15 14 4 17 17 C 1.53122 * 109.27720 * 300.81482 * 16 15 14 18 18 C 1.53120 * 109.15755 * 57.65572 * 17 16 15 19 19 H 1.09000 * 109.50346 * 62.29053 * 18 17 16 20 20 N 1.46897 * 109.50089 * 182.40254 * 18 17 16 21 21 C 1.46846 * 111.00190 * 298.28921 * 14 4 3 22 22 H 1.08994 * 109.46998 * 59.99775 * 1 2 3 23 23 H 1.08996 * 109.46941 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46736 * 299.99778 * 1 2 3 25 25 H 1.09003 * 109.46938 * 60.00336 * 3 2 1 26 26 H 1.08994 * 109.47116 * 300.00036 * 3 2 1 27 27 H 0.96992 * 120.00200 * 179.97438 * 9 8 6 28 28 H 1.09006 * 109.45984 * 305.84760 * 15 14 4 29 29 H 1.08994 * 109.46589 * 65.82345 * 15 14 4 30 30 H 1.09005 * 109.50297 * 180.87565 * 16 15 14 31 31 H 1.09003 * 109.50801 * 60.75952 * 16 15 14 32 32 H 1.08999 * 109.52263 * 297.75414 * 17 16 15 33 33 H 1.09001 * 109.57267 * 177.59300 * 17 16 15 34 34 H 1.00905 * 111.00205 * 299.80243 * 20 18 17 35 35 H 1.00901 * 111.00220 * 63.75700 * 20 18 17 36 36 H 1.09002 * 109.46225 * 294.18040 * 21 14 4 37 37 H 1.09007 * 109.45966 * 54.14354 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9787 2.1778 -0.0710 6 6 3.9740 0.3526 -1.1768 7 1 4.5242 -0.5627 -1.0164 8 6 3.6776 0.7629 -2.4594 9 7 3.0075 1.8775 -2.6549 10 14 4.2278 -0.2643 -3.9194 11 1 3.6246 -1.6182 -3.8273 12 1 3.7875 0.3888 -5.1782 13 1 5.7082 -0.3807 -3.9130 14 7 3.9752 0.5409 1.2458 15 6 5.4202 0.2807 1.2219 16 6 5.8168 -0.5177 2.4658 17 6 5.4436 0.2798 3.7186 18 6 3.9422 0.5794 3.6949 19 1 3.3840 -0.3566 3.7188 20 7 3.5861 1.3936 4.8645 21 6 3.6000 1.3458 2.4153 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6887 1.8463 0.8900 26 1 1.6887 1.8464 -0.8899 27 1 2.7993 2.1664 -3.5571 28 1 5.6716 -0.2907 0.3283 29 1 5.9597 1.2277 1.2109 30 1 6.8919 -0.6973 2.4556 31 1 5.2881 -1.4709 2.4704 32 1 6.0016 1.2161 3.7339 33 1 5.6849 -0.3027 4.6077 34 1 3.8027 0.9085 5.7223 35 1 4.0432 2.2926 4.8320 36 1 4.1480 2.2879 2.3987 37 1 2.5292 1.5482 2.3885 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261139806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:23 Heat of formation + Delta-G solvation = -40.448308 kcal Electronic energy + Delta-G solvation = -17170.363602 eV Core-core repulsion = 14561.614514 eV Total energy + Delta-G solvation = -2608.749088 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.68716 -36.52981 -34.46912 -32.63703 -31.58482 -28.30862 -27.69780 -25.64109 -24.40329 -23.38221 -21.49787 -19.93620 -19.19666 -16.40911 -15.91044 -15.54282 -14.90586 -14.44388 -14.22990 -14.02155 -13.91175 -13.43382 -13.14648 -12.98798 -12.52234 -12.07856 -11.78565 -11.29783 -10.82269 -10.76077 -10.72853 -10.63925 -10.50510 -10.39757 -10.31537 -9.88117 -9.47972 -8.84747 -8.51355 -8.46378 -8.17689 -7.10745 -5.98521 -3.99614 3.36118 3.39789 3.44218 4.42629 4.64472 5.03821 5.15113 5.20400 5.31017 5.36683 5.53475 5.73043 5.94344 5.96268 6.09078 6.18501 6.20740 6.24858 6.26843 6.36546 6.42602 6.53011 6.66825 6.78752 6.79982 7.03840 7.24099 7.30478 7.44869 7.58436 7.85167 8.05960 8.27501 8.46872 8.73563 9.01863 9.63719 11.09227 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.027136 B = 0.009415 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.602518 B = 2973.139000 C = 3611.088343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.076 3.924 4 C 0.220 3.780 5 H 0.011 0.989 6 C -0.485 4.485 7 H 0.065 0.935 8 C 0.059 3.941 9 N -0.902 5.902 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.279 1.279 14 N -0.522 5.522 15 C 0.062 3.938 16 C -0.114 4.114 17 C -0.150 4.150 18 C 0.094 3.906 19 H 0.087 0.913 20 N -0.845 5.845 21 C 0.062 3.938 22 H 0.027 0.973 23 H 0.067 0.933 24 H 0.021 0.979 25 H 0.002 0.998 26 H 0.078 0.922 27 H 0.260 0.740 28 H 0.089 0.911 29 H 0.016 0.984 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.336 0.664 35 H 0.335 0.665 36 H 0.014 0.986 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 -1.170 9.773 9.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C -0.001 4.001 4 C 0.114 3.886 5 H 0.029 0.971 6 C -0.523 4.523 7 H 0.083 0.917 8 C -0.141 4.141 9 N -0.542 5.542 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.205 1.205 14 N -0.248 5.248 15 C -0.066 4.066 16 C -0.152 4.152 17 C -0.189 4.189 18 C -0.018 4.018 19 H 0.105 0.895 20 N -0.373 5.373 21 C -0.067 4.067 22 H 0.046 0.954 23 H 0.086 0.914 24 H 0.039 0.961 25 H 0.020 0.980 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.032 0.968 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.630 -1.715 9.369 9.546 hybrid contribution 1.423 0.577 -0.652 1.669 sum 2.054 -1.138 8.717 9.028 Atomic orbital electron populations 1.22520 0.84985 1.00625 0.98255 1.88048 1.15717 1.28817 1.94905 1.22751 0.95849 0.83501 0.97969 1.19276 0.90012 0.93416 0.85938 0.97119 1.20942 1.34497 1.07593 0.89299 0.91709 1.24881 0.95199 0.95121 0.98895 1.69835 1.40475 1.22325 1.21524 0.86546 0.78750 0.80543 0.81474 1.20156 1.21508 1.20461 1.61866 1.13192 1.47184 1.02520 1.21987 0.88871 0.97900 0.97825 1.21567 0.99626 0.99579 0.94445 1.22409 0.98172 0.99950 0.98394 1.21490 0.93016 0.97135 0.90130 0.89534 1.58881 1.66696 1.07193 1.04541 1.21997 1.01059 0.93380 0.90221 0.95415 0.91395 0.96074 0.97999 0.90392 0.92975 0.89275 0.96630 0.92609 0.91340 0.92947 0.92936 0.85197 0.85343 0.96768 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 101.05 1.11 1.78 16 2 O -0.36 -8.81 10.14 -35.23 -0.36 -9.17 16 3 C 0.08 1.89 5.10 37.16 0.19 2.08 16 4 C 0.22 5.58 1.86 -68.86 -0.13 5.45 16 5 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 6 C -0.48 -13.28 7.40 -34.44 -0.25 -13.53 16 7 H 0.06 1.78 6.27 -52.49 -0.33 1.45 16 8 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 9 N -0.90 -25.61 11.37 55.43 0.63 -24.98 16 10 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 N -0.52 -11.43 4.45 -228.08 -1.02 -12.45 16 15 C 0.06 1.24 5.19 -3.83 -0.02 1.22 16 16 C -0.11 -1.81 6.09 -26.65 -0.16 -1.97 16 17 C -0.15 -2.12 5.57 -26.61 -0.15 -2.27 16 18 C 0.09 1.47 3.41 -67.64 -0.23 1.24 16 19 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 20 N -0.85 -11.06 9.26 -4.60 -0.04 -11.11 16 21 C 0.06 1.19 4.80 -3.84 -0.02 1.17 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.00 0.05 6.12 -51.93 -0.32 -0.27 16 26 H 0.08 2.11 6.20 -51.93 -0.32 1.79 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 28 H 0.09 1.92 5.92 -51.93 -0.31 1.61 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.34 3.63 9.04 -39.29 -0.36 3.27 16 35 H 0.33 4.03 8.98 -39.29 -0.35 3.68 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 1.57 5.98 -51.92 -0.31 1.26 16 LS Contribution 288.21 15.07 4.34 4.34 Total: -1.00 -29.06 288.21 -7.30 -36.35 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.08 Total: 3.66 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 0.25 Total: -3.29 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.43 Total: -48.53 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.36 Total: -9.17 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.06 -7.30 -36.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.094 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds