Wall clock time and date at job start Mon Mar 30 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00248 * 2 1 4 4 C 1.53002 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47030 * 176.00211 * 4 3 2 6 6 C 1.50692 * 109.47016 * 55.99693 * 4 3 2 7 7 H 1.08001 * 120.00308 * 239.99982 * 6 4 3 8 8 C 1.37880 * 120.00041 * 60.27672 * 6 4 3 9 9 N 1.31515 * 120.00007 * 359.71945 * 8 6 4 10 10 Si 1.86801 * 120.00336 * 179.72226 * 8 6 4 11 11 H 1.48504 * 109.46755 * 59.99612 * 10 8 6 12 12 H 1.48497 * 109.47310 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47259 * 300.00399 * 10 8 6 14 14 N 1.46905 * 109.46942 * 295.99829 * 4 3 2 15 15 C 1.46848 * 110.99547 * 174.08387 * 14 4 3 16 16 C 1.53039 * 109.52045 * 185.84096 * 15 14 4 17 17 C 1.53122 * 109.27720 * 300.81482 * 16 15 14 18 18 C 1.53120 * 109.15755 * 57.65572 * 17 16 15 19 19 H 1.09000 * 109.50346 * 62.29053 * 18 17 16 20 20 N 1.46897 * 109.50089 * 182.40254 * 18 17 16 21 21 C 1.46846 * 111.00190 * 298.28921 * 14 4 3 22 22 H 1.08994 * 109.46998 * 59.99775 * 1 2 3 23 23 H 1.08996 * 109.46941 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46736 * 299.99778 * 1 2 3 25 25 H 1.09003 * 109.46938 * 60.00336 * 3 2 1 26 26 H 1.08994 * 109.47116 * 300.00036 * 3 2 1 27 27 H 0.96992 * 120.00200 * 179.97438 * 9 8 6 28 28 H 1.09006 * 109.45984 * 305.84760 * 15 14 4 29 29 H 1.08994 * 109.46589 * 65.82345 * 15 14 4 30 30 H 1.09005 * 109.50297 * 180.87565 * 16 15 14 31 31 H 1.09003 * 109.50801 * 60.75952 * 16 15 14 32 32 H 1.08999 * 109.52263 * 297.75414 * 17 16 15 33 33 H 1.09001 * 109.57267 * 177.59300 * 17 16 15 34 34 H 1.00905 * 111.00205 * 299.80243 * 20 18 17 35 35 H 1.00901 * 111.00220 * 63.75700 * 20 18 17 36 36 H 1.09002 * 109.46225 * 294.18040 * 21 14 4 37 37 H 1.09007 * 109.45966 * 54.14354 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9787 2.1778 -0.0710 6 6 3.9740 0.3526 -1.1768 7 1 4.5242 -0.5627 -1.0164 8 6 3.6776 0.7629 -2.4594 9 7 3.0075 1.8775 -2.6549 10 14 4.2278 -0.2643 -3.9194 11 1 3.6246 -1.6182 -3.8273 12 1 3.7875 0.3888 -5.1782 13 1 5.7082 -0.3807 -3.9130 14 7 3.9752 0.5409 1.2458 15 6 5.4202 0.2807 1.2219 16 6 5.8168 -0.5177 2.4658 17 6 5.4436 0.2798 3.7186 18 6 3.9422 0.5794 3.6949 19 1 3.3840 -0.3566 3.7188 20 7 3.5861 1.3936 4.8645 21 6 3.6000 1.3458 2.4153 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6887 1.8463 0.8900 26 1 1.6887 1.8464 -0.8899 27 1 2.7993 2.1664 -3.5571 28 1 5.6716 -0.2907 0.3283 29 1 5.9597 1.2277 1.2109 30 1 6.8919 -0.6973 2.4556 31 1 5.2881 -1.4709 2.4704 32 1 6.0016 1.2161 3.7339 33 1 5.6849 -0.3027 4.6077 34 1 3.8027 0.9085 5.7223 35 1 4.0432 2.2926 4.8320 36 1 4.1480 2.2879 2.3987 37 1 2.5292 1.5482 2.3885 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261139806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:23 Heat of formation + Delta-G solvation = -62.992935 kcal Electronic energy + Delta-G solvation = -17171.341210 eV Core-core repulsion = 14561.614514 eV Total energy + Delta-G solvation = -2609.726696 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.24098 -38.29153 -36.08538 -34.42347 -33.13693 -30.08120 -29.13642 -27.40103 -26.28832 -24.94902 -22.93464 -21.72158 -20.66401 -18.42288 -17.59506 -16.98827 -16.64432 -16.18217 -15.99863 -15.62168 -15.41334 -14.87932 -14.71811 -14.41440 -14.09492 -13.74324 -13.34547 -13.14236 -12.69031 -12.56624 -12.36916 -12.29657 -12.09114 -12.01901 -11.79261 -11.65730 -11.02360 -10.82481 -10.57300 -10.12048 -9.53780 -8.87518 -8.09360 -6.17038 1.42052 1.45302 1.51811 2.44165 3.14758 3.24216 3.38080 3.77288 3.93239 4.03120 4.20565 4.37641 4.45582 4.48774 4.61624 4.62612 4.75018 4.78007 4.83220 4.84846 4.96685 5.05389 5.11672 5.19438 5.21637 5.26492 5.44842 5.50197 5.74828 6.13112 6.25470 6.37698 6.65995 6.69648 6.86623 6.91249 7.49564 8.97137 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.027136 B = 0.009415 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.602518 B = 2973.139000 C = 3611.088343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.384 6.384 3 C 0.090 3.910 4 C 0.221 3.779 5 H -0.023 1.023 6 C -0.496 4.496 7 H 0.058 0.942 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.958 3.042 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.270 1.270 14 N -0.529 5.529 15 C 0.061 3.939 16 C -0.106 4.106 17 C -0.141 4.141 18 C 0.105 3.895 19 H 0.075 0.925 20 N -0.845 5.845 21 C 0.064 3.936 22 H 0.025 0.975 23 H 0.093 0.907 24 H 0.041 0.959 25 H 0.015 0.985 26 H 0.051 0.949 27 H 0.260 0.740 28 H 0.065 0.935 29 H 0.008 0.992 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.354 0.646 35 H 0.343 0.657 36 H 0.010 0.990 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 -2.177 11.216 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.303 6.303 3 C 0.012 3.988 4 C 0.114 3.886 5 H -0.006 1.006 6 C -0.534 4.534 7 H 0.076 0.924 8 C -0.185 4.185 9 N -0.566 5.566 10 Si 0.784 3.216 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.195 1.195 14 N -0.254 5.254 15 C -0.067 4.067 16 C -0.144 4.144 17 C -0.181 4.181 18 C -0.007 4.007 19 H 0.093 0.907 20 N -0.376 5.376 21 C -0.065 4.065 22 H 0.043 0.957 23 H 0.111 0.889 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.026 0.974 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.168 0.832 35 H 0.156 0.844 36 H 0.029 0.971 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.121 -2.726 10.845 11.238 hybrid contribution 1.224 0.911 -1.061 1.859 sum 2.344 -1.814 9.783 10.223 Atomic orbital electron populations 1.22749 0.82353 1.02613 0.99074 1.87974 1.18686 1.28530 1.95064 1.22444 0.95514 0.83656 0.97162 1.19067 0.90486 0.91599 0.87423 1.00601 1.21154 1.34398 1.07480 0.90383 0.92391 1.25627 0.95366 0.96185 1.01367 1.69967 1.41254 1.23521 1.21892 0.85616 0.78734 0.78847 0.78451 1.20169 1.21029 1.19486 1.61830 1.14512 1.47104 1.01977 1.22016 0.87634 0.97813 0.99243 1.21512 1.01066 0.98756 0.93110 1.22352 0.96738 1.00399 0.98574 1.21238 0.94095 0.96198 0.89175 0.90665 1.58758 1.66974 1.07458 1.04389 1.22010 0.99879 0.93580 0.90997 0.95651 0.88859 0.94091 0.96734 0.93139 0.93049 0.91640 0.97378 0.90161 0.91716 0.92395 0.89816 0.83211 0.84441 0.97150 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 11.01 113.37 1.25 2.36 16 2 O -0.38 -19.04 10.14 -148.98 -1.51 -20.55 16 3 C 0.09 4.55 5.10 71.98 0.37 4.91 16 4 C 0.22 11.61 1.86 44.17 0.08 11.69 16 5 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 6 C -0.50 -27.84 7.40 25.60 0.19 -27.65 16 7 H 0.06 3.26 6.27 -2.91 -0.02 3.25 16 8 C 0.01 0.70 5.31 84.66 0.45 1.15 16 9 N -0.93 -53.88 11.37 21.45 0.24 -53.63 16 10 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 14 N -0.53 -23.45 4.45 -875.52 -3.90 -27.35 16 15 C 0.06 2.42 5.19 86.33 0.45 2.87 16 16 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16 17 C -0.14 -3.55 5.57 30.68 0.17 -3.38 16 18 C 0.10 3.07 3.41 44.97 0.15 3.22 16 19 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 20 N -0.85 -19.88 9.26 -168.48 -1.56 -21.44 16 21 C 0.06 2.43 4.80 86.32 0.41 2.85 16 22 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 24 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.01 0.70 6.12 -2.39 -0.01 0.68 16 26 H 0.05 2.83 6.20 -2.39 -0.01 2.82 16 27 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.07 2.88 5.92 -2.38 -0.01 2.86 16 29 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.35 6.40 9.04 -89.69 -0.81 5.59 16 35 H 0.34 7.37 8.98 -89.69 -0.81 6.56 16 36 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.06 2.45 5.98 -2.38 -0.01 2.43 16 Total: -1.00 -63.42 288.21 -1.54 -64.96 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -0.56 Total: 16.10 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 3.71 Total: -4.94 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -5.21 Total: -102.42 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -1.51 Total: -20.55 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -63.42 -1.54 -64.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.969 kcal (2) G-P(sol) polarization free energy of solvation -63.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds