Wall clock time and date at job start Mon Mar 30 2020 03:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00063 * 2 1 4 4 C 1.50699 * 109.47307 * 180.02562 * 3 2 1 5 5 S 1.76189 * 126.03293 * 269.97710 * 4 3 2 6 6 C 1.70955 * 90.33144 * 179.97438 * 5 4 3 7 7 C 1.50697 * 124.88160 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47165 * 270.02060 * 7 6 5 9 9 H 1.08004 * 119.99736 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00323 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99874 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00125 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46854 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46851 * 120.00266 * 12 10 8 15 15 H 1.48497 * 109.47198 * 240.00394 * 12 10 8 16 16 N 1.29124 * 110.23856 * 359.97438 * 6 5 4 17 17 C 1.31934 * 117.09847 * 0.02562 * 16 6 5 18 18 O 1.36133 * 122.79740 * 179.97438 * 17 16 6 19 19 H 1.08998 * 109.47033 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47336 * 300.00060 * 1 2 3 21 21 H 1.09006 * 109.47179 * 59.99946 * 1 2 3 22 22 H 1.09002 * 109.46900 * 59.99686 * 3 2 1 23 23 H 1.08996 * 109.47260 * 300.00464 * 3 2 1 24 24 H 1.08999 * 109.47434 * 30.02058 * 7 6 5 25 25 H 1.08998 * 109.47257 * 150.02382 * 7 6 5 26 26 H 0.97003 * 120.00229 * 180.02562 * 11 10 8 27 27 H 0.96697 * 113.99468 * 90.03350 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 16 4.5463 1.1050 1.4237 6 6 5.9297 0.9944 0.4255 7 6 7.3467 0.8814 0.9259 8 6 7.9319 2.2601 1.0930 9 1 7.3373 3.1310 0.8597 10 6 9.2264 2.4096 1.5436 11 7 9.9506 1.3491 1.8272 12 14 9.9520 4.1186 1.7500 13 1 8.9402 5.1355 1.3662 14 1 10.3443 4.3218 3.1677 15 1 11.1479 4.2568 0.8807 16 7 5.5859 1.0206 -0.8188 17 6 4.2977 1.1230 -1.0844 18 8 3.8072 1.1614 -2.3537 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.6885 1.8464 0.8900 23 1 1.6885 1.8464 -0.8899 24 1 7.3530 0.3653 1.8859 25 1 7.9421 0.3187 0.2070 26 1 10.8611 1.4543 2.1446 27 1 3.5949 0.2919 -2.7197 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261140628.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:01 Heat of formation + Delta-G solvation = -47.455800 kcal Electronic energy + Delta-G solvation = -13354.913591 eV Core-core repulsion = 10819.228656 eV Total energy + Delta-G solvation = -2535.684936 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.73073 -37.74579 -36.25535 -33.36250 -31.29803 -29.35702 -26.66552 -25.09559 -23.81991 -22.16995 -19.28051 -18.11778 -17.13714 -16.55095 -16.38456 -15.48034 -15.42307 -14.66980 -14.60059 -13.28601 -12.97908 -12.68712 -12.38519 -12.06718 -11.91526 -11.54935 -11.30572 -10.89648 -10.77404 -10.53328 -10.12026 -9.77038 -9.60092 -8.87154 -8.77883 -8.52993 -8.02854 -6.16768 -4.21686 1.14549 1.83464 2.32412 3.16316 3.26106 3.33917 3.39718 3.90505 4.18690 4.37944 4.97219 5.12114 5.19720 5.24821 5.27419 5.41292 5.50684 5.71392 5.98933 6.49894 7.04411 7.19285 7.32302 7.73573 7.77385 8.06346 8.37288 8.80029 9.42536 10.93403 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.050240 B = 0.006144 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.194822 B = 4556.326987 C = 4683.407506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.156 3.844 4 C -0.303 4.303 5 S 0.134 5.866 6 C 0.144 3.856 7 C 0.082 3.918 8 C -0.515 4.515 9 H 0.061 0.939 10 C 0.063 3.937 11 N -0.890 5.890 12 Si 0.902 3.098 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.281 1.281 16 N -0.512 5.512 17 C 0.283 3.717 18 O -0.468 6.468 19 H 0.085 0.915 20 H 0.040 0.960 21 H 0.041 0.959 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.265 0.735 27 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.561 -1.998 -1.615 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.078 3.922 4 C -0.426 4.426 5 S 0.390 5.610 6 C -0.133 4.133 7 C 0.041 3.959 8 C -0.555 4.555 9 H 0.079 0.921 10 C -0.139 4.139 11 N -0.528 5.528 12 Si 0.729 3.271 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.207 1.207 16 N -0.234 5.234 17 C 0.107 3.893 18 O -0.273 6.273 19 H 0.103 0.897 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -15.002 -1.635 -0.850 15.114 hybrid contribution -0.124 0.673 -0.981 1.196 sum -15.125 -0.962 -1.831 15.266 Atomic orbital electron populations 1.22726 0.81214 1.02673 0.99935 1.87984 1.19332 1.27983 1.95414 1.20386 0.86296 0.84632 1.00918 1.25115 0.99282 1.21810 0.96361 1.83864 0.98749 1.68147 1.10249 1.27995 1.02483 0.93721 0.89083 1.18269 0.81003 0.99424 0.97181 1.20932 0.98382 0.90761 1.45444 0.92123 1.24960 0.96639 0.97445 0.94897 1.69945 1.09706 1.28740 1.44403 0.86360 0.79148 0.83731 0.77815 1.19569 1.20725 1.20717 1.66009 1.16269 1.20738 1.20355 1.17859 0.86403 0.99911 0.85164 1.84859 1.83019 1.33809 1.25656 0.89658 0.94103 0.94084 0.92416 0.91404 0.93388 0.92420 0.92521 0.75284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 15 2 O -0.39 -5.37 10.69 -35.23 -0.38 -5.74 15 3 C 0.16 2.20 6.32 36.01 0.23 2.42 15 4 C -0.30 -5.41 6.24 -35.81 -0.22 -5.64 15 5 S 0.13 2.51 23.17 -107.50 -2.49 0.02 15 6 C 0.14 3.28 6.57 -13.42 -0.09 3.20 15 7 C 0.08 2.08 5.55 -29.04 -0.16 1.92 15 8 C -0.52 -14.28 9.09 -34.44 -0.31 -14.59 15 9 H 0.06 1.69 7.74 -52.48 -0.41 1.29 15 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 11 N -0.89 -25.49 13.29 55.43 0.74 -24.76 15 12 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 15 13 H -0.27 -6.36 7.11 56.52 0.40 -5.95 15 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 16 N -0.51 -11.74 10.56 -11.95 -0.13 -11.86 15 17 C 0.28 5.57 7.83 -19.00 -0.15 5.42 15 18 O -0.47 -7.88 13.35 -20.16 -0.27 -8.15 15 19 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 15 21 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 15 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.07 0.88 8.03 -51.93 -0.42 0.46 15 24 H 0.05 1.22 8.14 -51.93 -0.42 0.79 15 25 H 0.06 1.57 8.14 -51.93 -0.42 1.15 15 26 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 27 H 0.39 4.66 9.07 45.56 0.41 5.08 15 LS Contribution 261.99 15.07 3.95 3.95 Total: -1.00 -31.42 261.99 -5.37 -36.79 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -2.08 Total: -2.31 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 0.31 Total: -4.21 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.61 Total: -36.62 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.65 Total: -13.89 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.49 Total: 0.02 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.42 -5.37 -36.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140628.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.661 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds