Wall clock time and date at job start Mon Mar 30 2020 03:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00063 * 2 1 4 4 C 1.50699 * 109.47307 * 180.02562 * 3 2 1 5 5 S 1.76189 * 126.03293 * 269.97710 * 4 3 2 6 6 C 1.70955 * 90.33144 * 179.97438 * 5 4 3 7 7 C 1.50697 * 124.88160 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47165 * 270.02060 * 7 6 5 9 9 H 1.08004 * 119.99736 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00323 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99874 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00125 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46854 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46851 * 120.00266 * 12 10 8 15 15 H 1.48497 * 109.47198 * 240.00394 * 12 10 8 16 16 N 1.29124 * 110.23856 * 359.97438 * 6 5 4 17 17 C 1.31934 * 117.09847 * 0.02562 * 16 6 5 18 18 O 1.36133 * 122.79740 * 179.97438 * 17 16 6 19 19 H 1.08998 * 109.47033 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47336 * 300.00060 * 1 2 3 21 21 H 1.09006 * 109.47179 * 59.99946 * 1 2 3 22 22 H 1.09002 * 109.46900 * 59.99686 * 3 2 1 23 23 H 1.08996 * 109.47260 * 300.00464 * 3 2 1 24 24 H 1.08999 * 109.47434 * 30.02058 * 7 6 5 25 25 H 1.08998 * 109.47257 * 150.02382 * 7 6 5 26 26 H 0.97003 * 120.00229 * 180.02562 * 11 10 8 27 27 H 0.96697 * 113.99468 * 90.03350 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 16 4.5463 1.1050 1.4237 6 6 5.9297 0.9944 0.4255 7 6 7.3467 0.8814 0.9259 8 6 7.9319 2.2601 1.0930 9 1 7.3373 3.1310 0.8597 10 6 9.2264 2.4096 1.5436 11 7 9.9506 1.3491 1.8272 12 14 9.9520 4.1186 1.7500 13 1 8.9402 5.1355 1.3662 14 1 10.3443 4.3218 3.1677 15 1 11.1479 4.2568 0.8807 16 7 5.5859 1.0206 -0.8188 17 6 4.2977 1.1230 -1.0844 18 8 3.8072 1.1614 -2.3537 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.6885 1.8464 0.8900 23 1 1.6885 1.8464 -0.8899 24 1 7.3530 0.3653 1.8859 25 1 7.9421 0.3187 0.2070 26 1 10.8611 1.4543 2.1446 27 1 3.5949 0.2919 -2.7197 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261140628.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:00 Heat of formation + Delta-G solvation = -73.176542 kcal Electronic energy + Delta-G solvation = -13356.028926 eV Core-core repulsion = 10819.228656 eV Total energy + Delta-G solvation = -2536.800271 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.23456 -38.76176 -37.69060 -35.38209 -32.82646 -31.06656 -27.69317 -26.68889 -25.29823 -23.88354 -20.82446 -19.61959 -18.70093 -18.40520 -17.41309 -16.89266 -16.46911 -16.40530 -15.94961 -14.96941 -14.67471 -13.97912 -13.86193 -13.63183 -13.37288 -12.97889 -12.78135 -12.56874 -12.36211 -12.12275 -11.96510 -11.60235 -10.73489 -10.66943 -10.44923 -10.32002 -9.57650 -8.27072 -6.40513 -0.38793 0.32394 0.75252 1.40501 1.41603 1.54164 1.62937 2.38791 2.74199 2.93350 3.06671 3.78682 3.97921 4.13371 4.42852 4.50671 4.57453 4.62756 4.88460 4.92870 5.17801 5.23961 5.63228 5.98532 6.14733 6.51362 6.66087 6.80768 7.27889 8.83382 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.050240 B = 0.006144 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.194822 B = 4556.326987 C = 4683.407506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.157 3.843 4 C -0.284 4.284 5 S 0.189 5.811 6 C 0.098 3.902 7 C 0.091 3.909 8 C -0.534 4.534 9 H 0.053 0.947 10 C 0.014 3.986 11 N -0.921 5.921 12 Si 0.969 3.031 13 H -0.269 1.269 14 H -0.269 1.269 15 H -0.277 1.277 16 N -0.539 5.539 17 C 0.259 3.741 18 O -0.467 6.467 19 H 0.099 0.901 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.040 0.960 25 H 0.025 0.975 26 H 0.270 0.730 27 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.571 -1.067 -1.332 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.079 3.921 4 C -0.407 4.407 5 S 0.445 5.555 6 C -0.178 4.178 7 C 0.051 3.949 8 C -0.573 4.573 9 H 0.071 0.929 10 C -0.185 4.185 11 N -0.560 5.560 12 Si 0.793 3.207 13 H -0.193 1.193 14 H -0.194 1.194 15 H -0.203 1.203 16 N -0.262 5.262 17 C 0.084 3.916 18 O -0.276 6.276 19 H 0.117 0.883 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.096 0.904 23 H 0.101 0.899 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -17.029 -0.725 -0.576 17.054 hybrid contribution 0.325 0.316 -1.107 1.196 sum -16.704 -0.409 -1.683 16.793 Atomic orbital electron populations 1.22986 0.78701 1.04133 1.01322 1.87933 1.21976 1.27502 1.95689 1.20501 0.83584 0.85383 1.02674 1.25687 1.01335 1.18398 0.95259 1.83505 0.96221 1.66538 1.09244 1.27329 1.02842 0.97282 0.90388 1.17882 0.82982 0.98086 0.95944 1.21178 0.98953 0.91497 1.45694 0.92909 1.25826 0.96929 1.01424 0.94353 1.70043 1.10182 1.30859 1.44936 0.85343 0.78211 0.78858 0.78333 1.19287 1.19358 1.20255 1.65911 1.18612 1.20668 1.21054 1.17931 0.85650 1.01430 0.86605 1.84825 1.82561 1.35644 1.24563 0.88275 0.92733 0.92637 0.90379 0.89862 0.94175 0.95662 0.92085 0.73000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.61 15 2 O -0.41 -10.08 10.69 -148.98 -1.59 -11.68 15 3 C 0.16 3.90 6.32 71.24 0.45 4.35 15 4 C -0.28 -9.58 6.24 24.72 0.15 -9.43 15 5 S 0.19 6.90 23.17 -56.49 -1.31 5.59 15 6 C 0.10 4.56 6.57 88.51 0.58 5.14 15 7 C 0.09 4.87 5.55 29.10 0.16 5.03 15 8 C -0.53 -30.32 9.09 25.60 0.23 -30.09 15 9 H 0.05 3.00 7.74 -2.91 -0.02 2.98 15 10 C 0.01 0.81 5.46 84.66 0.46 1.27 15 11 N -0.92 -53.78 13.29 21.45 0.28 -53.49 15 12 Si 0.97 43.73 29.54 68.60 2.03 45.76 15 13 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 14 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 15 H -0.28 -12.24 7.11 99.48 0.71 -11.54 15 16 N -0.54 -25.07 10.56 -304.49 -3.21 -28.28 15 17 C 0.26 9.97 7.83 83.71 0.66 10.62 15 18 O -0.47 -15.06 13.35 -95.07 -1.27 -16.33 15 19 H 0.10 1.21 8.14 -2.39 -0.02 1.19 15 20 H 0.05 0.68 8.14 -2.39 -0.02 0.66 15 21 H 0.06 0.68 8.14 -2.38 -0.02 0.66 15 22 H 0.08 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.08 1.85 8.03 -2.39 -0.02 1.83 15 24 H 0.04 2.13 8.14 -2.39 -0.02 2.11 15 25 H 0.03 1.46 8.14 -2.39 -0.02 1.44 15 26 H 0.27 14.67 8.31 -92.71 -0.77 13.90 15 27 H 0.41 9.13 9.07 -74.06 -0.67 8.46 15 Total: -1.00 -67.97 261.99 -0.61 -68.58 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 0.52 Total: 1.34 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 3.95 Total: -11.48 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -2.93 Total: -81.77 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -2.86 Total: -28.01 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 6.90 SS G_CDS: -1.31 Total: 5.59 kcal Total: -67.97 -0.61 -68.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140628.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.599 kcal (2) G-P(sol) polarization free energy of solvation -67.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds