Wall clock time and date at job start Mon Mar 30 2020 03:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00060 * 2 1 4 4 C 1.46894 * 110.99680 * 236.04205 * 2 1 3 5 5 C 1.52999 * 109.47468 * 293.95542 * 4 2 1 6 6 N 1.46497 * 109.47582 * 180.02562 * 5 4 2 7 7 C 1.36934 * 120.00006 * 89.99551 * 6 5 4 8 8 H 1.07999 * 120.00229 * 217.13813 * 7 6 5 9 9 C 1.38815 * 119.99852 * 37.14772 * 7 6 5 10 10 N 1.31615 * 120.00094 * 21.22267 * 9 7 6 11 11 Si 1.86802 * 119.99707 * 201.22726 * 9 7 6 12 12 H 1.48500 * 109.47484 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47120 * 119.99844 * 11 9 7 14 14 H 1.48498 * 109.46904 * 239.99515 * 11 9 7 15 15 C 1.46502 * 120.00101 * 270.00215 * 6 5 4 16 16 H 1.08999 * 110.45209 * 356.16344 * 15 6 5 17 17 C 1.54511 * 110.51329 * 118.76536 * 15 6 5 18 18 C 1.54478 * 104.06061 * 118.64449 * 17 15 6 19 19 O 1.44418 * 104.80435 * 23.97904 * 18 17 15 20 20 C 1.44423 * 105.27646 * 319.48993 * 19 18 17 21 21 H 1.08997 * 109.47409 * 183.95761 * 1 2 3 22 22 H 1.09000 * 109.47008 * 63.95259 * 1 2 3 23 23 H 1.09005 * 109.47005 * 303.95685 * 1 2 3 24 24 H 1.08993 * 109.47490 * 56.04443 * 3 2 1 25 25 H 1.08999 * 109.46920 * 176.05038 * 3 2 1 26 26 H 1.09003 * 109.46522 * 296.04512 * 3 2 1 27 27 H 1.08998 * 109.47054 * 53.95669 * 4 2 1 28 28 H 1.09003 * 109.47148 * 173.95515 * 4 2 1 29 29 H 1.08998 * 109.47087 * 300.00108 * 5 4 2 30 30 H 1.09003 * 109.46958 * 59.99857 * 5 4 2 31 31 H 0.97003 * 119.99616 * 174.90562 * 10 9 7 32 32 H 1.08995 * 110.51037 * 237.29354 * 17 15 6 33 33 H 1.09006 * 110.50732 * 359.86558 * 17 15 6 34 34 H 1.08996 * 110.37128 * 142.81227 * 18 17 15 35 35 H 1.09003 * 110.37187 * 265.14825 * 18 17 15 36 36 H 1.09000 * 110.36963 * 281.67427 * 20 19 18 37 37 H 1.08999 * 110.37529 * 159.34433 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 -1.1375 5 6 1.6314 -2.2427 -0.9702 6 7 2.1568 -3.0068 -2.1044 7 6 3.4139 -3.5461 -2.0429 8 1 4.0374 -3.5644 -2.9246 9 6 3.8869 -4.0696 -0.8474 10 7 3.0402 -4.4352 0.0916 11 14 5.7251 -4.2550 -0.5714 12 1 6.4568 -3.7752 -1.7713 13 1 6.1316 -3.4527 0.6103 14 1 6.0482 -5.6848 -0.3339 15 6 1.3374 -3.1937 -3.3043 16 1 0.3473 -2.7610 -3.1606 17 6 2.0289 -2.5663 -4.5354 18 6 2.2573 -3.7614 -5.4872 19 8 1.2636 -4.7357 -5.1012 20 6 1.2298 -4.6935 -3.6580 21 1 -0.3634 -1.0252 0.0709 22 1 -0.3633 0.4513 -0.9233 23 1 -0.3633 0.5741 0.8524 24 1 1.5899 1.9163 0.8523 25 1 3.0828 1.3432 0.0708 26 1 1.7044 1.8722 -0.9234 27 1 1.5610 -0.3873 -2.0627 28 1 3.0797 -0.6612 -1.1756 29 1 2.0657 -2.6214 -0.0451 30 1 0.5470 -2.3475 -0.9322 31 1 3.3657 -4.8687 0.8960 32 1 1.3798 -1.8252 -5.0016 33 1 2.9794 -2.1149 -4.2507 34 1 2.1071 -3.4559 -6.5226 35 1 3.2597 -4.1678 -5.3521 36 1 2.0745 -5.2430 -3.2425 37 1 0.2902 -5.1041 -3.2883 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:46 Heat of formation + Delta-G solvation = -16.027055 kcal Electronic energy + Delta-G solvation = -17027.619859 eV Core-core repulsion = 14419.929756 eV Total energy + Delta-G solvation = -2607.690103 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.66283 -37.07745 -34.90743 -31.65652 -30.13021 -28.57122 -27.26785 -26.94117 -24.48869 -22.51783 -21.84837 -20.18690 -19.64865 -16.57169 -15.77027 -15.40465 -14.89291 -14.74896 -14.31939 -14.25962 -14.11771 -13.22557 -13.14680 -12.32050 -12.13826 -12.07884 -11.72317 -11.38127 -11.29412 -11.07954 -10.89589 -10.87829 -10.55660 -10.37788 -10.30249 -9.95587 -9.78991 -9.55386 -8.97950 -8.50119 -7.84502 -6.57264 -5.83362 -3.39988 3.33913 3.43335 3.44499 4.33661 4.54093 4.76396 5.26414 5.42393 5.54441 5.57754 5.62624 5.64838 5.74128 5.82497 5.91086 6.08491 6.11387 6.13229 6.21784 6.28061 6.33988 6.42815 6.55538 6.62614 6.63586 6.90108 6.93864 7.11164 7.45484 7.55668 7.58055 7.79440 7.89925 8.51327 9.15676 9.77663 10.35044 11.18324 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.012122 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.744631 B = 2309.257926 C = 3464.582427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.545 5.545 3 C 0.028 3.972 4 C 0.041 3.959 5 C 0.151 3.849 6 N -0.573 5.573 7 C -0.266 4.266 8 H 0.061 0.939 9 C 0.020 3.980 10 N -0.882 5.882 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.289 1.289 15 C 0.145 3.855 16 H 0.058 0.942 17 C -0.169 4.169 18 C 0.053 3.947 19 O -0.395 6.395 20 C 0.035 3.965 21 H 0.072 0.928 22 H 0.016 0.984 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.022 0.978 31 H 0.257 0.743 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 6.727 -3.363 8.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.121 4.121 4 C -0.088 4.088 5 C 0.025 3.975 6 N -0.293 5.293 7 C -0.395 4.395 8 H 0.078 0.922 9 C -0.181 4.181 10 N -0.524 5.524 11 Si 0.725 3.275 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.216 1.216 15 C 0.036 3.964 16 H 0.076 0.924 17 C -0.209 4.209 18 C -0.025 4.025 19 O -0.314 6.314 20 C -0.043 4.043 21 H 0.091 0.909 22 H 0.035 0.965 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.075 6.324 -2.866 7.594 hybrid contribution 0.816 0.505 -0.428 1.051 sum -2.259 6.829 -3.294 7.912 Atomic orbital electron populations 1.22373 0.88330 1.02344 0.99139 1.61962 1.07278 1.12612 1.45069 1.22331 1.00683 0.89740 0.99325 1.22921 0.99920 0.97432 0.88552 1.20965 0.95131 0.86657 0.94767 1.43839 1.14351 1.57997 1.13112 1.18891 0.89515 1.34965 0.96131 0.92163 1.25194 0.97580 0.97239 0.98130 1.69890 1.32952 1.39937 1.09614 0.86343 0.85684 0.77402 0.78037 1.20126 1.21285 1.21625 1.21717 0.93343 0.93073 0.88221 0.92379 1.23371 1.02235 0.97643 0.97660 1.23209 0.92441 0.88958 0.97843 1.88967 1.59521 1.60431 1.22475 1.23963 1.02144 0.99036 0.79185 0.90891 0.96545 0.92381 0.92220 0.91720 0.96544 0.96912 0.91234 0.87626 0.95931 0.93295 0.92727 0.90017 0.90889 0.92797 0.90087 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.32 60.07 0.56 0.97 16 2 N -0.54 -9.76 5.02 -251.26 -1.26 -11.02 16 3 C 0.03 0.42 9.57 60.06 0.57 0.99 16 4 C 0.04 0.83 5.28 -3.83 -0.02 0.81 16 5 C 0.15 3.45 5.21 -4.04 -0.02 3.43 16 6 N -0.57 -13.51 2.42 -163.89 -0.40 -13.91 16 7 C -0.27 -6.83 7.54 -15.06 -0.11 -6.94 16 8 H 0.06 1.57 7.39 -52.49 -0.39 1.18 16 9 C 0.02 0.53 4.96 -17.43 -0.09 0.44 16 10 N -0.88 -24.55 11.42 55.49 0.63 -23.92 16 11 Si 0.90 21.09 29.61 -169.99 -5.03 16.05 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 15 C 0.15 3.03 3.66 -66.36 -0.24 2.79 16 16 H 0.06 1.16 7.84 -51.93 -0.41 0.76 16 17 C -0.17 -3.13 6.47 -25.16 -0.16 -3.29 16 18 C 0.05 0.94 7.63 37.93 0.29 1.23 16 19 O -0.40 -8.00 11.65 -35.23 -0.41 -8.41 16 20 C 0.03 0.73 7.22 37.93 0.27 1.01 16 21 H 0.07 1.18 6.47 -51.93 -0.34 0.85 16 22 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.06 0.78 8.12 -51.93 -0.42 0.35 16 24 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 25 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.01 0.25 8.12 -51.93 -0.42 -0.17 16 28 H 0.07 1.51 8.06 -51.93 -0.42 1.09 16 29 H 0.11 2.80 5.47 -51.93 -0.28 2.51 16 30 H 0.02 0.50 6.33 -51.93 -0.33 0.17 16 31 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.61 7.26 -51.93 -0.38 1.23 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.93 6.90 -51.93 -0.36 1.58 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 293.66 15.07 4.43 4.43 Total: -1.00 -27.59 293.66 -7.25 -34.83 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.26 Total: 0.52 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 1.05 Total: 1.43 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -1.02 Total: -48.85 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.41 Total: -8.41 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.59 -7.25 -34.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.806 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds