Wall clock time and date at job start Mon Mar 30 2020 03:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00060 * 2 1 4 4 C 1.46894 * 110.99680 * 236.04205 * 2 1 3 5 5 C 1.52999 * 109.47468 * 293.95542 * 4 2 1 6 6 N 1.46497 * 109.47582 * 180.02562 * 5 4 2 7 7 C 1.36934 * 120.00006 * 89.99551 * 6 5 4 8 8 H 1.07999 * 120.00229 * 217.13813 * 7 6 5 9 9 C 1.38815 * 119.99852 * 37.14772 * 7 6 5 10 10 N 1.31615 * 120.00094 * 21.22267 * 9 7 6 11 11 Si 1.86802 * 119.99707 * 201.22726 * 9 7 6 12 12 H 1.48500 * 109.47484 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47120 * 119.99844 * 11 9 7 14 14 H 1.48498 * 109.46904 * 239.99515 * 11 9 7 15 15 C 1.46502 * 120.00101 * 270.00215 * 6 5 4 16 16 H 1.08999 * 110.45209 * 356.16344 * 15 6 5 17 17 C 1.54511 * 110.51329 * 118.76536 * 15 6 5 18 18 C 1.54478 * 104.06061 * 118.64449 * 17 15 6 19 19 O 1.44418 * 104.80435 * 23.97904 * 18 17 15 20 20 C 1.44423 * 105.27646 * 319.48993 * 19 18 17 21 21 H 1.08997 * 109.47409 * 183.95761 * 1 2 3 22 22 H 1.09000 * 109.47008 * 63.95259 * 1 2 3 23 23 H 1.09005 * 109.47005 * 303.95685 * 1 2 3 24 24 H 1.08993 * 109.47490 * 56.04443 * 3 2 1 25 25 H 1.08999 * 109.46920 * 176.05038 * 3 2 1 26 26 H 1.09003 * 109.46522 * 296.04512 * 3 2 1 27 27 H 1.08998 * 109.47054 * 53.95669 * 4 2 1 28 28 H 1.09003 * 109.47148 * 173.95515 * 4 2 1 29 29 H 1.08998 * 109.47087 * 300.00108 * 5 4 2 30 30 H 1.09003 * 109.46958 * 59.99857 * 5 4 2 31 31 H 0.97003 * 119.99616 * 174.90562 * 10 9 7 32 32 H 1.08995 * 110.51037 * 237.29354 * 17 15 6 33 33 H 1.09006 * 110.50732 * 359.86558 * 17 15 6 34 34 H 1.08996 * 110.37128 * 142.81227 * 18 17 15 35 35 H 1.09003 * 110.37187 * 265.14825 * 18 17 15 36 36 H 1.09000 * 110.36963 * 281.67427 * 20 19 18 37 37 H 1.08999 * 110.37529 * 159.34433 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 -1.1375 5 6 1.6314 -2.2427 -0.9702 6 7 2.1568 -3.0068 -2.1044 7 6 3.4139 -3.5461 -2.0429 8 1 4.0374 -3.5644 -2.9246 9 6 3.8869 -4.0696 -0.8474 10 7 3.0402 -4.4352 0.0916 11 14 5.7251 -4.2550 -0.5714 12 1 6.4568 -3.7752 -1.7713 13 1 6.1316 -3.4527 0.6103 14 1 6.0482 -5.6848 -0.3339 15 6 1.3374 -3.1937 -3.3043 16 1 0.3473 -2.7610 -3.1606 17 6 2.0289 -2.5663 -4.5354 18 6 2.2573 -3.7614 -5.4872 19 8 1.2636 -4.7357 -5.1012 20 6 1.2298 -4.6935 -3.6580 21 1 -0.3634 -1.0252 0.0709 22 1 -0.3633 0.4513 -0.9233 23 1 -0.3633 0.5741 0.8524 24 1 1.5899 1.9163 0.8523 25 1 3.0828 1.3432 0.0708 26 1 1.7044 1.8722 -0.9234 27 1 1.5610 -0.3873 -2.0627 28 1 3.0797 -0.6612 -1.1756 29 1 2.0657 -2.6214 -0.0451 30 1 0.5470 -2.3475 -0.9322 31 1 3.3657 -4.8687 0.8960 32 1 1.3798 -1.8252 -5.0016 33 1 2.9794 -2.1149 -4.2507 34 1 2.1071 -3.4559 -6.5226 35 1 3.2597 -4.1678 -5.3521 36 1 2.0745 -5.2430 -3.2425 37 1 0.2902 -5.1041 -3.2883 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:45 Heat of formation + Delta-G solvation = -34.400451 kcal Electronic energy + Delta-G solvation = -17028.416589 eV Core-core repulsion = 14419.929756 eV Total energy + Delta-G solvation = -2608.486833 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.29044 -38.54602 -36.62929 -33.55874 -31.76495 -30.14838 -28.81389 -28.37932 -26.26427 -24.12109 -23.38747 -21.72897 -21.41064 -18.41518 -17.47926 -17.02980 -16.51024 -16.15683 -16.04855 -15.87848 -15.54013 -14.92015 -14.75778 -13.97887 -13.67675 -13.52619 -13.14161 -12.98427 -12.83129 -12.74744 -12.54490 -12.47043 -12.16767 -12.05263 -11.97986 -11.80762 -11.46036 -11.32502 -10.62088 -10.48243 -9.20579 -8.49760 -7.82419 -5.41819 1.44532 1.49326 1.57048 2.48273 3.01790 3.22121 3.28240 3.83351 4.01321 4.13703 4.27744 4.31363 4.34661 4.47435 4.51576 4.56959 4.62265 4.74089 4.82741 4.86739 4.92098 4.95278 4.99155 5.07136 5.14199 5.19058 5.29966 5.42241 5.71182 5.80454 5.98570 6.21770 6.26369 6.52600 7.19012 7.86730 8.39192 9.16108 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.012122 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.744631 B = 2309.257926 C = 3464.582427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.567 5.567 3 C 0.029 3.971 4 C 0.062 3.938 5 C 0.157 3.843 6 N -0.585 5.585 7 C -0.258 4.258 8 H 0.056 0.944 9 C -0.028 4.028 10 N -0.913 5.913 11 Si 0.949 3.051 12 H -0.268 1.268 13 H -0.292 1.292 14 H -0.292 1.292 15 C 0.138 3.862 16 H 0.069 0.931 17 C -0.159 4.159 18 C 0.051 3.949 19 O -0.400 6.400 20 C 0.042 3.958 21 H 0.058 0.942 22 H 0.027 0.973 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.019 0.981 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.252 0.748 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 8.199 -4.460 9.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.292 5.292 3 C -0.119 4.119 4 C -0.068 4.068 5 C 0.030 3.970 6 N -0.306 5.306 7 C -0.388 4.388 8 H 0.074 0.926 9 C -0.226 4.226 10 N -0.556 5.556 11 Si 0.778 3.222 12 H -0.192 1.192 13 H -0.218 1.218 14 H -0.219 1.219 15 C 0.030 3.970 16 H 0.087 0.913 17 C -0.199 4.199 18 C -0.026 4.026 19 O -0.319 6.319 20 C -0.037 4.037 21 H 0.077 0.923 22 H 0.045 0.955 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.480 7.815 -3.989 9.439 hybrid contribution 0.880 0.074 -0.127 0.892 sum -2.600 7.889 -4.115 9.270 Atomic orbital electron populations 1.22383 0.86751 1.02044 1.00742 1.61899 1.08897 1.14385 1.44007 1.22373 1.00469 0.88169 1.00876 1.22497 0.98580 0.95970 0.89786 1.20785 0.94844 0.88233 0.93097 1.43988 1.14189 1.58368 1.14015 1.18994 0.90425 1.33612 0.95741 0.92632 1.25776 1.00625 0.97880 0.98300 1.70016 1.34213 1.41468 1.09953 0.85495 0.82067 0.76848 0.77764 1.19228 1.21830 1.21939 1.21892 0.93840 0.93142 0.88085 0.91263 1.23260 1.01773 0.98244 0.96579 1.23390 0.91579 0.87986 0.99644 1.88965 1.60144 1.61304 1.21465 1.23761 1.01034 0.98924 0.79941 0.92319 0.95468 0.90012 0.89934 0.92221 0.95473 0.96259 0.93385 0.91248 0.95596 0.93869 0.90062 0.91332 0.87213 0.93615 0.93422 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.32 127.69 1.19 2.02 16 2 N -0.57 -19.54 5.02 -948.86 -4.76 -24.30 16 3 C 0.03 0.80 9.57 127.69 1.22 2.02 16 4 C 0.06 2.44 5.28 86.30 0.46 2.89 16 5 C 0.16 7.20 5.21 86.38 0.45 7.65 16 6 N -0.58 -27.63 2.42 -672.42 -1.62 -29.26 16 7 C -0.26 -13.37 7.54 84.03 0.63 -12.74 16 8 H 0.06 2.91 7.39 -2.91 -0.02 2.88 16 9 C -0.03 -1.50 4.96 84.86 0.42 -1.07 16 10 N -0.91 -52.17 11.42 21.65 0.25 -51.92 16 11 Si 0.95 44.00 29.61 68.60 2.03 46.03 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 14 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 15 C 0.14 5.62 3.66 46.01 0.17 5.79 16 16 H 0.07 2.65 7.84 -2.39 -0.02 2.63 16 17 C -0.16 -5.52 6.47 31.61 0.20 -5.32 16 18 C 0.05 1.68 7.63 72.48 0.55 2.23 16 19 O -0.40 -15.51 11.65 -148.98 -1.74 -17.24 16 20 C 0.04 1.75 7.22 72.48 0.52 2.27 16 21 H 0.06 1.84 6.47 -2.39 -0.02 1.83 16 22 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.08 1.96 8.12 -2.38 -0.02 1.94 16 24 H 0.08 1.87 8.12 -2.39 -0.02 1.86 16 25 H 0.06 1.67 8.12 -2.39 -0.02 1.65 16 26 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 28 H 0.05 2.08 8.06 -2.39 -0.02 2.06 16 29 H 0.07 3.77 5.47 -2.39 -0.01 3.76 16 30 H 0.03 1.14 6.33 -2.39 -0.02 1.13 16 31 H 0.25 14.03 8.32 -92.71 -0.77 13.26 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.07 2.58 7.26 -2.38 -0.02 2.57 16 34 H 0.11 2.87 8.14 -2.39 -0.02 2.86 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 2.32 6.90 -2.39 -0.02 2.30 16 37 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -59.01 293.66 1.00 -58.01 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.02 Total: 12.92 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.82 Total: 5.75 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -6.14 Total: -105.48 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -1.74 Total: -17.24 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -59.01 1.00 -58.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.614 kcal (2) G-P(sol) polarization free energy of solvation -59.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds