Wall clock time and date at job start Mon Mar 30 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99733 * 2 1 4 4 H 1.09000 * 109.47040 * 26.20922 * 3 2 1 5 5 C 1.50704 * 109.46603 * 146.20630 * 3 2 1 6 6 H 1.08000 * 119.99501 * 120.00437 * 5 3 2 7 7 C 1.37869 * 120.00253 * 299.72850 * 5 3 2 8 8 N 1.31517 * 120.00090 * 0.27499 * 7 5 3 9 9 Si 1.86800 * 120.00062 * 180.27531 * 7 5 3 10 10 H 1.48506 * 109.47295 * 90.00093 * 9 7 5 11 11 H 1.48508 * 109.47315 * 209.99891 * 9 7 5 12 12 H 1.48501 * 109.47114 * 329.99936 * 9 7 5 13 13 C 1.52994 * 109.47527 * 266.20903 * 3 2 1 14 14 N 1.46896 * 109.47305 * 174.78657 * 13 3 2 15 15 C 1.46958 * 110.99987 * 288.13221 * 14 13 3 16 16 C 1.53052 * 109.36775 * 176.81013 * 15 14 13 17 17 N 1.46954 * 109.36133 * 58.39971 * 16 15 14 18 18 C 1.46905 * 111.00128 * 176.81300 * 17 16 15 19 19 C 1.46955 * 110.88483 * 300.68024 * 17 16 15 20 20 C 1.46961 * 111.00250 * 164.33229 * 14 13 3 21 21 H 1.09000 * 109.47061 * 184.91983 * 1 2 3 22 22 H 1.09005 * 109.47241 * 304.91617 * 1 2 3 23 23 H 1.09000 * 109.47833 * 64.91749 * 1 2 3 24 24 H 0.97000 * 119.99878 * 180.02562 * 8 7 5 25 25 H 1.09004 * 109.47107 * 294.78128 * 13 3 2 26 26 H 1.08999 * 109.47315 * 54.78270 * 13 3 2 27 27 H 1.09006 * 109.48863 * 296.77882 * 15 14 13 28 28 H 1.09000 * 109.48816 * 56.83887 * 15 14 13 29 29 H 1.08997 * 109.48845 * 298.43848 * 16 15 14 30 30 H 1.08995 * 109.50419 * 178.37764 * 16 15 14 31 31 H 1.08999 * 109.47490 * 183.80165 * 18 17 16 32 32 H 1.09004 * 109.46865 * 303.80267 * 18 17 16 33 33 H 1.09003 * 109.46967 * 63.79420 * 18 17 16 34 34 H 1.08998 * 109.48572 * 299.35623 * 19 17 16 35 35 H 1.08993 * 109.51328 * 179.30127 * 19 17 16 36 36 H 1.08998 * 109.48738 * 303.15557 * 20 14 13 37 37 H 1.08997 * 109.48806 * 63.19602 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3156 2.0124 0.4539 5 6 3.2932 1.2841 0.7903 6 1 4.2254 1.5488 0.3136 7 6 3.2760 0.9322 2.1232 8 7 2.1408 0.6099 2.7037 9 14 4.8653 0.9131 3.1047 10 1 5.0856 2.2483 3.7162 11 1 4.7739 -0.1124 4.1750 12 1 5.9998 0.5881 2.2034 13 6 2.3047 1.7327 -1.4393 14 7 2.7853 3.1208 -1.4494 15 6 1.6932 4.0585 -1.1533 16 6 2.2493 5.4832 -1.0949 17 7 2.8871 5.8103 -2.3777 18 6 3.3678 7.1984 -2.3879 19 6 3.9793 4.8727 -2.6738 20 6 3.4232 3.4480 -2.7323 21 1 -0.3633 -1.0239 0.0881 22 1 -0.3634 0.5882 0.8427 23 1 -0.3635 0.4356 -0.9307 24 1 2.1287 0.3626 3.6416 25 1 3.0687 1.0807 -1.8627 26 1 1.3941 1.6592 -2.0337 27 1 0.9372 3.9950 -1.9361 28 1 1.2451 3.8032 -0.1930 29 1 2.9856 5.5536 -0.2943 30 1 1.4363 6.1836 -0.9039 31 1 3.7745 7.4349 -3.3712 32 1 2.5394 7.8713 -2.1659 33 1 4.1458 7.3190 -1.6341 34 1 4.7352 4.9362 -1.8912 35 1 4.4277 5.1277 -3.6340 36 1 4.2364 2.7477 -2.9231 37 1 2.6870 3.3771 -3.5330 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261144656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:00 Heat of formation + Delta-G solvation = -29.050310 kcal Electronic energy + Delta-G solvation = -16910.398034 eV Core-core repulsion = 14302.143200 eV Total energy + Delta-G solvation = -2608.254834 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.92023 -36.62856 -34.73691 -32.32315 -30.62395 -29.63805 -27.20138 -25.02467 -24.54166 -23.34076 -22.79803 -20.15921 -19.35301 -16.60477 -15.92582 -15.07765 -14.79187 -14.64405 -14.57795 -14.18569 -14.02740 -13.67352 -13.16123 -12.99056 -12.27961 -12.19945 -12.03683 -11.67462 -11.48934 -10.94756 -10.87647 -10.78120 -10.59913 -10.44290 -10.31838 -9.92536 -9.69424 -9.02394 -8.37762 -8.24011 -8.03370 -7.46291 -5.92141 -3.97194 3.37206 3.43453 3.48057 4.10133 4.43262 4.51671 5.16345 5.18310 5.27986 5.42294 5.50217 5.62212 5.73047 5.75763 5.83603 5.84960 5.90066 6.05697 6.12606 6.21396 6.28672 6.32369 6.42152 6.48124 6.61256 6.70882 6.79609 7.14829 7.17631 7.37963 7.73223 7.77555 8.02979 8.45839 8.94947 9.16810 9.69523 11.17185 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.024648 B = 0.008562 C = 0.007186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.709071 B = 3269.633911 C = 3895.418487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.220 3.780 4 H 0.017 0.983 5 C -0.496 4.496 6 H 0.066 0.934 7 C 0.070 3.930 8 N -0.875 5.875 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.048 3.952 14 N -0.516 5.516 15 C 0.060 3.940 16 C 0.058 3.942 17 N -0.548 5.548 18 C 0.026 3.974 19 C 0.059 3.941 20 C 0.058 3.942 21 H 0.056 0.944 22 H 0.033 0.967 23 H 0.006 0.994 24 H 0.258 0.742 25 H 0.067 0.933 26 H 0.008 0.992 27 H 0.029 0.971 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 8.797 -8.549 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.294 6.294 3 C 0.164 3.836 4 H 0.035 0.965 5 C -0.534 4.534 6 H 0.084 0.916 7 C -0.133 4.133 8 N -0.513 5.513 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.080 4.080 14 N -0.242 5.242 15 C -0.068 4.068 16 C -0.070 4.070 17 N -0.273 5.273 18 C -0.122 4.122 19 C -0.069 4.069 20 C -0.071 4.071 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.025 0.975 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.026 0.974 27 H 0.047 0.953 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.037 8.552 -8.381 11.974 hybrid contribution 0.562 0.196 0.588 0.837 sum 0.525 8.748 -7.793 11.727 Atomic orbital electron populations 1.22375 0.85761 0.99937 0.97287 1.88128 1.15625 1.31469 1.94158 1.19690 0.94094 0.81546 0.88297 0.96498 1.21048 0.93448 1.45182 0.93713 0.91568 1.25050 0.95925 0.94488 0.97866 1.69999 1.25192 1.44725 1.11411 0.86610 0.84170 0.77453 0.79719 1.20850 1.21426 1.19863 1.22683 0.96915 0.87502 1.00895 1.61940 1.29560 1.02908 1.29744 1.22140 0.92446 0.90980 1.01269 1.22177 0.98492 0.96616 0.89696 1.62192 1.29747 1.02540 1.32793 1.22319 0.99282 0.89768 1.00852 1.22152 0.92403 0.92057 1.00334 1.22132 0.98623 0.95295 0.91065 0.92531 0.94808 0.97510 0.93266 0.91445 0.97365 0.95259 0.89561 0.93604 0.90904 0.91756 0.91676 0.95710 0.93839 0.91007 0.90586 0.95086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.97 10.88 101.05 1.10 2.07 16 2 O -0.38 -9.99 9.74 -35.23 -0.34 -10.33 16 3 C 0.22 5.67 2.08 -27.88 -0.06 5.61 16 4 H 0.02 0.47 6.05 -51.93 -0.31 0.16 16 5 C -0.50 -14.00 8.53 -34.44 -0.29 -14.29 16 6 H 0.07 1.87 7.74 -52.49 -0.41 1.46 16 7 C 0.07 2.01 5.40 -17.82 -0.10 1.91 16 8 N -0.88 -25.87 12.84 55.43 0.71 -25.16 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.05 1.04 4.68 -3.83 -0.02 1.02 16 14 N -0.52 -10.17 4.39 -234.47 -1.03 -11.20 16 15 C 0.06 1.08 5.44 -3.77 -0.02 1.06 16 16 C 0.06 0.91 5.62 -3.77 -0.02 0.88 16 17 N -0.55 -7.90 4.97 -242.76 -1.21 -9.10 16 18 C 0.03 0.30 9.60 60.07 0.58 0.88 16 19 C 0.06 0.85 5.62 -3.77 -0.02 0.83 16 20 C 0.06 0.94 5.59 -3.76 -0.02 0.92 16 21 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.03 0.77 7.98 -51.93 -0.41 0.35 16 23 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.07 1.49 7.92 -51.93 -0.41 1.07 16 26 H 0.01 0.17 8.05 -51.93 -0.42 -0.25 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 1.70 6.50 -51.93 -0.34 1.36 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.20 8.02 -51.93 -0.42 0.78 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 296.34 15.07 4.47 4.47 Total: -1.00 -30.65 296.34 -7.80 -38.45 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -6.50 Total: -4.93 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 1.13 Total: 0.90 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -1.52 Total: -45.46 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.34 Total: -10.33 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.65 -7.80 -38.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.397 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds