Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99733 * 2 1 4 4 H 1.09000 * 109.47040 * 26.20922 * 3 2 1 5 5 C 1.50704 * 109.46603 * 146.20630 * 3 2 1 6 6 H 1.08000 * 119.99501 * 120.00437 * 5 3 2 7 7 C 1.37869 * 120.00253 * 299.72850 * 5 3 2 8 8 N 1.31517 * 120.00090 * 0.27499 * 7 5 3 9 9 Si 1.86800 * 120.00062 * 180.27531 * 7 5 3 10 10 H 1.48506 * 109.47295 * 90.00093 * 9 7 5 11 11 H 1.48508 * 109.47315 * 209.99891 * 9 7 5 12 12 H 1.48501 * 109.47114 * 329.99936 * 9 7 5 13 13 C 1.52994 * 109.47527 * 266.20903 * 3 2 1 14 14 N 1.46896 * 109.47305 * 174.78657 * 13 3 2 15 15 C 1.46958 * 110.99987 * 288.13221 * 14 13 3 16 16 C 1.53052 * 109.36775 * 176.81013 * 15 14 13 17 17 N 1.46954 * 109.36133 * 58.39971 * 16 15 14 18 18 C 1.46905 * 111.00128 * 176.81300 * 17 16 15 19 19 C 1.46955 * 110.88483 * 300.68024 * 17 16 15 20 20 C 1.46961 * 111.00250 * 164.33229 * 14 13 3 21 21 H 1.09000 * 109.47061 * 184.91983 * 1 2 3 22 22 H 1.09005 * 109.47241 * 304.91617 * 1 2 3 23 23 H 1.09000 * 109.47833 * 64.91749 * 1 2 3 24 24 H 0.97000 * 119.99878 * 180.02562 * 8 7 5 25 25 H 1.09004 * 109.47107 * 294.78128 * 13 3 2 26 26 H 1.08999 * 109.47315 * 54.78270 * 13 3 2 27 27 H 1.09006 * 109.48863 * 296.77882 * 15 14 13 28 28 H 1.09000 * 109.48816 * 56.83887 * 15 14 13 29 29 H 1.08997 * 109.48845 * 298.43848 * 16 15 14 30 30 H 1.08995 * 109.50419 * 178.37764 * 16 15 14 31 31 H 1.08999 * 109.47490 * 183.80165 * 18 17 16 32 32 H 1.09004 * 109.46865 * 303.80267 * 18 17 16 33 33 H 1.09003 * 109.46967 * 63.79420 * 18 17 16 34 34 H 1.08998 * 109.48572 * 299.35623 * 19 17 16 35 35 H 1.08993 * 109.51328 * 179.30127 * 19 17 16 36 36 H 1.08998 * 109.48738 * 303.15557 * 20 14 13 37 37 H 1.08997 * 109.48806 * 63.19602 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3156 2.0124 0.4539 5 6 3.2932 1.2841 0.7903 6 1 4.2254 1.5488 0.3136 7 6 3.2760 0.9322 2.1232 8 7 2.1408 0.6099 2.7037 9 14 4.8653 0.9131 3.1047 10 1 5.0856 2.2483 3.7162 11 1 4.7739 -0.1124 4.1750 12 1 5.9998 0.5881 2.2034 13 6 2.3047 1.7327 -1.4393 14 7 2.7853 3.1208 -1.4494 15 6 1.6932 4.0585 -1.1533 16 6 2.2493 5.4832 -1.0949 17 7 2.8871 5.8103 -2.3777 18 6 3.3678 7.1984 -2.3879 19 6 3.9793 4.8727 -2.6738 20 6 3.4232 3.4480 -2.7323 21 1 -0.3633 -1.0239 0.0881 22 1 -0.3634 0.5882 0.8427 23 1 -0.3635 0.4356 -0.9307 24 1 2.1287 0.3626 3.6416 25 1 3.0687 1.0807 -1.8627 26 1 1.3941 1.6592 -2.0337 27 1 0.9372 3.9950 -1.9361 28 1 1.2451 3.8032 -0.1930 29 1 2.9856 5.5536 -0.2943 30 1 1.4363 6.1836 -0.9039 31 1 3.7745 7.4349 -3.3712 32 1 2.5394 7.8713 -2.1659 33 1 4.1458 7.3190 -1.6341 34 1 4.7352 4.9362 -1.8912 35 1 4.4277 5.1277 -3.6340 36 1 4.2364 2.7477 -2.9231 37 1 2.6870 3.3771 -3.5330 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261144656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = -51.974570 kcal Electronic energy + Delta-G solvation = -16911.392104 eV Core-core repulsion = 14302.143200 eV Total energy + Delta-G solvation = -2609.248904 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.28222 -38.45074 -36.19427 -34.45869 -31.92074 -31.27778 -28.74983 -26.83911 -26.27977 -24.68770 -24.14511 -21.96750 -20.70876 -18.69894 -17.44786 -16.74719 -16.47365 -16.01669 -15.82796 -15.79988 -15.67007 -15.39682 -14.75510 -14.55036 -13.93323 -13.71195 -13.37430 -12.95908 -12.91827 -12.80657 -12.50154 -12.30614 -12.21463 -11.96483 -11.91074 -11.69046 -11.58950 -11.07321 -10.51555 -9.96035 -9.35619 -9.03765 -8.08295 -6.20345 1.42154 1.43313 1.54078 2.45830 2.85972 3.00619 3.24543 3.89648 3.98378 4.10869 4.14247 4.29516 4.38759 4.45854 4.55832 4.57190 4.64346 4.65631 4.73597 4.80624 4.84049 4.87899 4.93131 4.94398 5.01954 5.04275 5.11444 5.39326 5.82993 5.99320 5.99875 6.18568 6.32966 6.42157 6.82960 7.14154 7.50007 9.00542 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.024648 B = 0.008562 C = 0.007186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.709071 B = 3269.633911 C = 3895.418487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.406 6.406 3 C 0.222 3.778 4 H -0.006 1.006 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.019 3.981 8 N -0.907 5.907 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.063 3.937 14 N -0.536 5.536 15 C 0.063 3.937 16 C 0.066 3.934 17 N -0.553 5.553 18 C 0.026 3.974 19 C 0.063 3.937 20 C 0.057 3.943 21 H 0.078 0.922 22 H 0.016 0.984 23 H 0.032 0.968 24 H 0.258 0.742 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.035 0.965 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.023 0.977 34 H 0.030 0.970 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 9.880 -9.679 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.324 6.324 3 C 0.166 3.834 4 H 0.011 0.989 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.181 4.181 8 N -0.546 5.546 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.065 4.065 14 N -0.262 5.262 15 C -0.066 4.066 16 C -0.063 4.063 17 N -0.278 5.278 18 C -0.121 4.121 19 C -0.065 4.065 20 C -0.071 4.071 21 H 0.096 0.904 22 H 0.035 0.965 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.645 9.654 -9.528 13.579 hybrid contribution 0.295 -0.129 0.896 0.952 sum 0.940 9.525 -8.632 12.889 Atomic orbital electron populations 1.22482 0.83543 1.01279 0.97881 1.88017 1.18115 1.31772 1.94517 1.19571 0.92667 0.80815 0.90382 0.98890 1.21326 0.94150 1.45092 0.94446 0.92215 1.25828 0.99097 0.94239 0.98950 1.70117 1.27073 1.45740 1.11648 0.85602 0.80317 0.77664 0.78206 1.20083 1.21066 1.19331 1.22341 0.97086 0.88919 0.98146 1.61869 1.30214 1.01995 1.32119 1.22081 0.92333 0.92198 0.99939 1.22077 0.98784 0.95373 0.90025 1.62224 1.29939 1.04066 1.31565 1.22408 0.99797 0.87977 1.01966 1.22153 0.92006 0.90923 1.01433 1.22212 0.98574 0.96831 0.89453 0.90390 0.96484 0.94944 0.93279 0.92003 0.96537 0.94689 0.92238 0.95393 0.88800 0.89853 0.90415 0.95876 0.95158 0.88049 0.90258 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.98 10.88 113.37 1.23 3.22 16 2 O -0.41 -21.79 9.74 -148.98 -1.45 -23.24 16 3 C 0.22 11.66 2.08 29.85 0.06 11.73 16 4 H -0.01 -0.37 6.05 -2.39 -0.01 -0.38 16 5 C -0.51 -29.39 8.53 25.60 0.22 -29.17 16 6 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.11 5.40 84.65 0.46 1.57 16 8 N -0.91 -54.53 12.84 21.44 0.28 -54.25 16 9 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.06 2.76 4.68 86.30 0.40 3.17 16 14 N -0.54 -21.00 4.39 -895.71 -3.93 -24.93 16 15 C 0.06 2.26 5.44 86.31 0.47 2.73 16 16 C 0.07 1.97 5.62 86.31 0.49 2.46 16 17 N -0.55 -14.61 4.97 -921.95 -4.58 -19.19 16 18 C 0.03 0.52 9.60 127.69 1.23 1.75 16 19 C 0.06 1.69 5.62 86.31 0.49 2.17 16 20 C 0.06 1.80 5.59 86.31 0.48 2.28 16 21 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 22 H 0.02 0.78 7.98 -2.38 -0.02 0.76 16 23 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 25 H 0.06 2.73 7.92 -2.38 -0.02 2.71 16 26 H 0.02 0.68 8.05 -2.39 -0.02 0.66 16 27 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.06 2.43 6.50 -2.39 -0.02 2.41 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 2.39 8.13 -2.39 -0.02 2.37 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.35 8.13 -2.39 -0.02 1.33 16 33 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.08 2.40 8.02 -2.39 -0.02 2.38 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -65.58 296.34 -1.13 -66.71 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.01 Total: 5.65 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 5.52 Total: 1.89 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -8.23 Total: -98.38 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.45 Total: -23.24 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -65.58 -1.13 -66.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.737 kcal (2) G-P(sol) polarization free energy of solvation -65.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds