Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46956 * 110.99579 * 2 1 4 4 C 1.53055 * 109.36440 * 176.80868 * 3 2 1 5 5 N 1.46964 * 109.36256 * 58.39923 * 4 3 2 6 6 C 1.46897 * 110.99891 * 176.81218 * 5 4 3 7 7 C 1.46952 * 110.87813 * 300.68207 * 5 4 3 8 8 H 1.09002 * 109.48821 * 299.35229 * 7 5 4 9 9 C 1.53004 * 109.50609 * 179.30266 * 7 5 4 10 10 O 1.42900 * 109.47299 * 66.81978 * 9 7 5 11 11 C 1.42903 * 113.99876 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.46841 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00338 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99708 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99958 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99830 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47385 * 60.00075 * 16 14 12 18 18 H 1.48497 * 109.47099 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47296 * 299.99807 * 16 14 12 20 20 C 1.46956 * 111.00392 * 236.19972 * 2 1 3 21 21 H 1.09004 * 109.46867 * 183.80132 * 1 2 3 22 22 H 1.08999 * 109.47848 * 303.79963 * 1 2 3 23 23 H 1.08994 * 109.47155 * 63.80511 * 1 2 3 24 24 H 1.09002 * 109.48769 * 296.77501 * 3 2 1 25 25 H 1.09002 * 109.48988 * 56.82223 * 3 2 1 26 26 H 1.08995 * 109.48913 * 178.36955 * 4 3 2 27 27 H 1.08997 * 109.48858 * 298.43489 * 4 3 2 28 28 H 1.09000 * 109.46963 * 192.84312 * 6 5 4 29 29 H 1.09004 * 109.47269 * 312.84869 * 6 5 4 30 30 H 1.09003 * 109.47088 * 72.84151 * 6 5 4 31 31 H 1.08994 * 109.47360 * 186.82610 * 9 7 5 32 32 H 1.09002 * 109.46577 * 306.82257 * 9 7 5 33 33 H 1.08994 * 109.46943 * 300.00098 * 11 10 9 34 34 H 1.09005 * 109.46718 * 60.00329 * 11 10 9 35 35 H 0.97001 * 120.00301 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.48833 * 63.22032 * 20 2 1 37 37 H 1.09004 * 109.48491 * 303.15386 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5233 1.3292 0.0804 5 7 4.0501 0.5659 -1.0597 6 6 5.5191 0.5660 -1.0596 7 6 3.5234 -0.8060 -1.0596 8 1 3.8253 -1.3113 -0.1422 9 6 4.0771 -1.5658 -2.2668 10 8 5.4868 -1.7419 -2.1132 11 6 6.1060 -2.4438 -3.1931 12 6 7.5839 -2.5709 -2.9278 13 1 8.0081 -2.1568 -2.0250 14 6 8.3948 -3.2150 -3.8381 15 7 7.8784 -3.7189 -4.9376 16 14 10.2268 -3.3733 -3.5089 17 1 10.4397 -4.1234 -2.2450 18 1 10.8702 -4.1025 -4.6311 19 1 10.8268 -2.0202 -3.3885 20 6 1.9957 -0.7632 -1.1400 21 1 -0.3633 -1.0255 0.0681 22 1 -0.3635 0.5716 0.8539 23 1 -0.3633 0.4536 -0.9221 24 1 1.6936 1.8773 -0.9174 25 1 1.6008 1.9130 0.8600 26 1 3.9176 2.3450 0.0513 27 1 3.8252 0.8481 1.0107 28 1 5.8824 0.1984 -2.0193 29 1 5.8824 1.5809 -0.8980 30 1 5.8824 -0.0812 -0.2614 31 1 3.5944 -2.5407 -2.3351 32 1 3.8788 -0.9977 -3.1757 33 1 5.6654 -3.4369 -3.2809 34 1 5.9498 -1.8935 -4.1210 35 1 8.4488 -4.1718 -5.5782 36 1 1.6938 -0.2821 -2.0703 37 1 1.6014 -1.7790 -1.1109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261165544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = -34.290635 kcal Electronic energy + Delta-G solvation = -16536.155840 eV Core-core repulsion = 13927.673768 eV Total energy + Delta-G solvation = -2608.482071 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.40483 -36.74844 -34.99122 -32.76659 -31.54750 -29.13311 -27.50449 -25.59378 -24.82257 -23.05478 -22.26233 -21.45253 -19.52200 -16.43494 -15.97632 -15.79064 -15.57025 -14.87794 -14.73741 -14.50620 -13.98504 -13.74517 -13.60924 -13.00507 -12.39848 -12.18629 -12.17154 -11.65171 -11.44651 -11.33123 -11.21563 -11.01041 -10.87329 -10.69192 -10.58785 -10.35333 -9.85299 -9.10563 -8.77178 -8.43807 -8.14656 -7.97036 -6.10376 -4.12229 3.32384 3.35290 3.38825 3.82001 4.18169 4.35350 4.75433 4.93144 5.09112 5.26183 5.26785 5.30689 5.39472 5.48065 5.51274 5.64108 5.71703 5.78942 5.88206 5.97763 6.01354 6.07592 6.11041 6.26106 6.45130 6.86942 6.93455 6.96407 7.12248 7.39112 7.43425 7.46207 7.78997 8.15612 8.56895 9.00487 9.52608 11.01080 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.054682 B = 0.005372 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.931593 B = 5211.290604 C = 5575.033233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.057 3.943 4 C 0.054 3.946 5 N -0.538 5.538 6 C 0.030 3.970 7 C 0.091 3.909 8 H 0.055 0.945 9 C 0.070 3.930 10 O -0.390 6.390 11 C 0.194 3.806 12 C -0.514 4.514 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.907 3.093 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.064 3.936 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.025 0.975 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.039 0.961 28 H 0.101 0.899 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.004 0.996 34 H 0.006 0.994 35 H 0.264 0.736 36 H 0.044 0.956 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 8.336 8.154 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.071 4.071 4 C -0.074 4.074 5 N -0.264 5.264 6 C -0.117 4.117 7 C -0.018 4.018 8 H 0.073 0.927 9 C -0.009 4.009 10 O -0.310 6.310 11 C 0.120 3.880 12 C -0.553 4.553 13 H 0.083 0.917 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.734 3.266 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.064 4.064 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.022 0.978 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.227 8.299 8.144 16.873 hybrid contribution 0.761 -0.288 -0.192 0.836 sum -11.466 8.011 7.952 16.090 Atomic orbital electron populations 1.22332 0.87311 1.02193 1.00343 1.62107 1.07627 1.14078 1.43262 1.22182 0.95113 0.89154 1.00657 1.22167 0.93854 0.98578 0.92840 1.62237 1.09603 1.13156 1.41374 1.22538 0.85209 0.99352 1.04620 1.21654 0.92711 0.88953 0.98498 0.92748 1.22186 0.85239 0.97246 0.96208 1.87927 1.17265 1.77739 1.48037 1.20185 0.92831 0.90390 0.84591 1.21000 0.91445 1.36434 1.06378 0.91668 1.24938 0.99391 0.95269 0.94814 1.69950 1.36049 1.37656 1.10084 0.86413 0.84024 0.78367 0.77761 1.20069 1.21183 1.20009 1.22109 0.94175 0.98396 0.91721 0.91352 0.91514 0.95654 0.94078 0.90644 0.90520 0.94322 0.88105 0.93347 0.95180 0.93948 0.93604 0.97843 0.97658 0.92615 0.93810 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.60 60.06 0.58 0.83 16 2 N -0.55 -6.86 4.97 -242.76 -1.21 -8.07 16 3 C 0.06 0.67 5.62 -3.77 -0.02 0.65 16 4 C 0.05 0.72 5.60 -3.76 -0.02 0.70 16 5 N -0.54 -8.77 4.78 -234.73 -1.12 -9.90 16 6 C 0.03 0.53 8.30 60.06 0.50 1.03 16 7 C 0.09 1.51 2.37 -67.66 -0.16 1.35 16 8 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 9 C 0.07 1.33 5.25 37.16 0.20 1.52 16 10 O -0.39 -9.18 6.92 -35.23 -0.24 -9.42 16 11 C 0.19 5.28 5.69 36.00 0.20 5.48 16 12 C -0.51 -14.97 9.43 -34.44 -0.32 -15.30 16 13 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 16 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.06 0.88 4.90 -3.77 -0.02 0.86 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 23 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 26 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.10 2.09 5.97 -51.93 -0.31 1.78 16 29 H 0.05 0.74 7.97 -51.93 -0.41 0.33 16 30 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 294.97 15.07 4.45 4.45 Total: -1.00 -30.43 294.97 -8.18 -38.61 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -6.60 Total: -5.01 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 0.83 Total: -1.32 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -1.59 Total: -44.08 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.24 Total: -9.42 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.43 -8.18 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.318 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds