Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46956 * 110.99579 * 2 1 4 4 C 1.53055 * 109.36440 * 176.80868 * 3 2 1 5 5 N 1.46964 * 109.36256 * 58.39923 * 4 3 2 6 6 C 1.46897 * 110.99891 * 176.81218 * 5 4 3 7 7 C 1.46952 * 110.87813 * 300.68207 * 5 4 3 8 8 H 1.09002 * 109.48821 * 299.35229 * 7 5 4 9 9 C 1.53004 * 109.50609 * 179.30266 * 7 5 4 10 10 O 1.42900 * 109.47299 * 66.81978 * 9 7 5 11 11 C 1.42903 * 113.99876 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.46841 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00338 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99708 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99958 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99830 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47385 * 60.00075 * 16 14 12 18 18 H 1.48497 * 109.47099 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47296 * 299.99807 * 16 14 12 20 20 C 1.46956 * 111.00392 * 236.19972 * 2 1 3 21 21 H 1.09004 * 109.46867 * 183.80132 * 1 2 3 22 22 H 1.08999 * 109.47848 * 303.79963 * 1 2 3 23 23 H 1.08994 * 109.47155 * 63.80511 * 1 2 3 24 24 H 1.09002 * 109.48769 * 296.77501 * 3 2 1 25 25 H 1.09002 * 109.48988 * 56.82223 * 3 2 1 26 26 H 1.08995 * 109.48913 * 178.36955 * 4 3 2 27 27 H 1.08997 * 109.48858 * 298.43489 * 4 3 2 28 28 H 1.09000 * 109.46963 * 192.84312 * 6 5 4 29 29 H 1.09004 * 109.47269 * 312.84869 * 6 5 4 30 30 H 1.09003 * 109.47088 * 72.84151 * 6 5 4 31 31 H 1.08994 * 109.47360 * 186.82610 * 9 7 5 32 32 H 1.09002 * 109.46577 * 306.82257 * 9 7 5 33 33 H 1.08994 * 109.46943 * 300.00098 * 11 10 9 34 34 H 1.09005 * 109.46718 * 60.00329 * 11 10 9 35 35 H 0.97001 * 120.00301 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.48833 * 63.22032 * 20 2 1 37 37 H 1.09004 * 109.48491 * 303.15386 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5233 1.3292 0.0804 5 7 4.0501 0.5659 -1.0597 6 6 5.5191 0.5660 -1.0596 7 6 3.5234 -0.8060 -1.0596 8 1 3.8253 -1.3113 -0.1422 9 6 4.0771 -1.5658 -2.2668 10 8 5.4868 -1.7419 -2.1132 11 6 6.1060 -2.4438 -3.1931 12 6 7.5839 -2.5709 -2.9278 13 1 8.0081 -2.1568 -2.0250 14 6 8.3948 -3.2150 -3.8381 15 7 7.8784 -3.7189 -4.9376 16 14 10.2268 -3.3733 -3.5089 17 1 10.4397 -4.1234 -2.2450 18 1 10.8702 -4.1025 -4.6311 19 1 10.8268 -2.0202 -3.3885 20 6 1.9957 -0.7632 -1.1400 21 1 -0.3633 -1.0255 0.0681 22 1 -0.3635 0.5716 0.8539 23 1 -0.3633 0.4536 -0.9221 24 1 1.6936 1.8773 -0.9174 25 1 1.6008 1.9130 0.8600 26 1 3.9176 2.3450 0.0513 27 1 3.8252 0.8481 1.0107 28 1 5.8824 0.1984 -2.0193 29 1 5.8824 1.5809 -0.8980 30 1 5.8824 -0.0812 -0.2614 31 1 3.5944 -2.5407 -2.3351 32 1 3.8788 -0.9977 -3.1757 33 1 5.6654 -3.4369 -3.2809 34 1 5.9498 -1.8935 -4.1210 35 1 8.4488 -4.1718 -5.5782 36 1 1.6938 -0.2821 -2.0703 37 1 1.6014 -1.7790 -1.1109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = -56.965184 kcal Electronic energy + Delta-G solvation = -16537.139082 eV Core-core repulsion = 13927.673768 eV Total energy + Delta-G solvation = -2609.465313 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62601 -38.42849 -36.25256 -34.90170 -32.89666 -30.22812 -29.54436 -26.96187 -26.07972 -24.41556 -24.19249 -22.69306 -20.73821 -18.61969 -17.49132 -17.36063 -16.82948 -16.49452 -15.89972 -15.74122 -15.55827 -15.27630 -14.88361 -14.69043 -13.77725 -13.46776 -13.24637 -13.20510 -13.03224 -12.89461 -12.67922 -12.63541 -12.31297 -12.21337 -12.14740 -11.74309 -11.48736 -11.25865 -10.83128 -10.16604 -9.43067 -9.26735 -8.31364 -6.43563 1.40127 1.44598 1.52919 2.33973 2.77469 2.91534 3.02721 3.28245 3.82306 4.02837 4.15170 4.17072 4.32264 4.38332 4.43771 4.55157 4.61306 4.65141 4.68087 4.75806 4.76343 4.84628 4.91409 4.97020 5.02975 5.09811 5.18178 5.37915 5.54853 5.93400 5.95044 5.96700 6.14296 6.20132 6.52137 6.80809 7.28050 8.80798 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.054682 B = 0.005372 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.931593 B = 5211.290604 C = 5575.033233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.559 5.559 3 C 0.060 3.940 4 C 0.053 3.947 5 N -0.545 5.545 6 C 0.040 3.960 7 C 0.098 3.902 8 H 0.037 0.963 9 C 0.064 3.936 10 O -0.395 6.395 11 C 0.210 3.790 12 C -0.545 4.545 13 H 0.062 0.938 14 C 0.008 3.992 15 N -0.931 5.931 16 Si 0.981 3.019 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.265 1.265 20 C 0.072 3.928 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.029 0.971 24 H 0.041 0.959 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.012 0.988 31 H 0.051 0.949 32 H 0.043 0.957 33 H -0.016 1.016 34 H -0.015 1.015 35 H 0.270 0.730 36 H 0.043 0.957 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.752 9.222 9.225 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.284 5.284 3 C -0.068 4.068 4 C -0.075 4.075 5 N -0.271 5.271 6 C -0.108 4.108 7 C -0.011 4.011 8 H 0.055 0.945 9 C -0.014 4.014 10 O -0.315 6.315 11 C 0.135 3.865 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.191 4.191 15 N -0.570 5.570 16 Si 0.804 3.196 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.190 1.190 20 C -0.056 4.056 21 H 0.093 0.907 22 H 0.102 0.898 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.001 0.999 34 H 0.002 0.998 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.626 9.199 9.229 18.145 hybrid contribution 0.780 -0.526 -0.510 1.070 sum -11.847 8.673 8.719 17.076 Atomic orbital electron populations 1.22402 0.85237 1.03078 1.01338 1.62121 1.09507 1.14383 1.42346 1.22221 0.93685 0.89061 1.01828 1.22299 0.95262 0.98794 0.91156 1.62250 1.08569 1.13068 1.43173 1.22327 0.86452 1.00148 1.01842 1.21575 0.94774 0.88737 0.96035 0.94469 1.22434 0.82987 0.98223 0.97714 1.87927 1.19874 1.77132 1.46591 1.19790 0.92712 0.89255 0.84772 1.21319 0.92606 1.37495 1.06820 0.92001 1.25935 1.04736 0.94224 0.94204 1.70063 1.38165 1.37854 1.10916 0.85260 0.77332 0.78872 0.78106 1.19140 1.20064 1.18964 1.21993 0.91718 0.99482 0.92437 0.90742 0.89776 0.95198 0.94121 0.87994 0.88693 0.94983 0.91639 0.90933 0.96910 0.93101 0.93877 0.99857 0.99773 0.92085 0.93878 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.60 127.69 1.23 1.67 16 2 N -0.56 -12.73 4.97 -921.95 -4.58 -17.31 16 3 C 0.06 1.25 5.62 86.31 0.49 1.74 16 4 C 0.05 1.31 5.60 86.31 0.48 1.80 16 5 N -0.55 -17.51 4.78 -896.54 -4.29 -21.79 16 6 C 0.04 1.43 8.30 127.69 1.06 2.49 16 7 C 0.10 3.25 2.37 44.92 0.11 3.35 16 8 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 9 C 0.06 2.52 5.25 71.98 0.38 2.89 16 10 O -0.40 -19.38 6.92 -148.98 -1.03 -20.41 16 11 C 0.21 11.88 5.69 71.24 0.41 12.29 16 12 C -0.54 -32.49 9.43 25.60 0.24 -32.25 16 13 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 14 C 0.01 0.44 5.46 84.66 0.46 0.90 16 15 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 16 Si 0.98 44.55 29.54 68.60 2.03 46.58 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 C 0.07 1.89 4.90 86.31 0.42 2.31 16 21 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 23 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.10 1.62 8.13 -2.39 -0.02 1.60 16 26 H 0.09 2.01 8.04 -2.39 -0.02 2.00 16 27 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 2.82 5.97 -2.39 -0.01 2.80 16 29 H 0.07 2.18 7.97 -2.38 -0.02 2.16 16 30 H 0.01 0.47 8.00 -2.39 -0.02 0.46 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -65.93 294.97 -1.31 -67.24 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 1.00 Total: 4.53 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 5.27 Total: -2.81 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -8.58 Total: -95.14 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -1.03 Total: -20.41 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.93 -1.31 -67.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.279 kcal (2) G-P(sol) polarization free energy of solvation -65.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds