Wall clock time and date at job start Mon Mar 30 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46949 * 111.00222 * 2 1 4 4 C 1.53049 * 109.36497 * 183.18737 * 3 2 1 5 5 N 1.46964 * 109.38462 * 301.60805 * 4 3 2 6 6 C 1.46896 * 111.01997 * 183.16887 * 5 4 3 7 7 C 1.46960 * 110.87516 * 59.28644 * 5 4 3 8 8 H 1.08994 * 109.48952 * 60.69246 * 7 5 4 9 9 C 1.52995 * 109.48709 * 180.73535 * 7 5 4 10 10 O 1.42905 * 109.47239 * 63.89150 * 9 7 5 11 11 C 1.42901 * 114.00248 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47152 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00031 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99555 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47075 * 269.99598 * 16 14 12 18 18 H 1.48500 * 109.46811 * 150.00018 * 16 14 12 19 19 H 1.48503 * 109.47346 * 30.00404 * 16 14 12 20 20 C 1.46959 * 110.99793 * 123.79783 * 2 1 3 21 21 H 1.08997 * 109.47453 * 296.20343 * 1 2 3 22 22 H 1.09001 * 109.46911 * 56.19712 * 1 2 3 23 23 H 1.08998 * 109.47793 * 176.20003 * 1 2 3 24 24 H 1.09002 * 109.49401 * 303.15286 * 3 2 1 25 25 H 1.08998 * 109.49176 * 63.20070 * 3 2 1 26 26 H 1.08996 * 109.49211 * 61.56824 * 4 3 2 27 27 H 1.09001 * 109.49252 * 181.61254 * 4 3 2 28 28 H 1.09000 * 109.46742 * 289.75398 * 6 5 4 29 29 H 1.08998 * 109.47180 * 49.75774 * 6 5 4 30 30 H 1.08993 * 109.47059 * 169.75792 * 6 5 4 31 31 H 1.08999 * 109.47677 * 303.89550 * 9 7 5 32 32 H 1.08994 * 109.47668 * 183.88960 * 9 7 5 33 33 H 1.08996 * 109.47254 * 60.00335 * 11 10 9 34 34 H 1.09003 * 109.46858 * 300.00111 * 11 10 9 35 35 H 0.96999 * 120.00531 * 0.02562 * 15 14 12 36 36 H 1.09001 * 109.48485 * 56.84271 * 20 2 1 37 37 H 1.08996 * 109.49076 * 296.78267 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3289 -0.0803 5 7 4.0505 0.5656 1.0596 6 6 5.5195 0.5651 1.0593 7 6 3.5234 -0.8062 1.0598 8 1 3.8252 -1.3119 0.1427 9 6 4.0768 -1.5655 2.2673 10 8 3.6053 -0.9555 3.4706 11 6 4.0663 -1.5919 4.6641 12 6 3.5106 -0.8704 5.8649 13 1 2.8692 -0.0120 5.7300 14 6 3.8210 -1.3061 7.1356 15 7 4.6016 -2.3517 7.2998 16 14 3.1327 -0.4113 8.6239 17 1 4.0712 0.6647 9.0322 18 1 2.9631 -1.3715 9.7439 19 1 1.8168 0.1841 8.2787 20 6 1.9956 -0.7632 1.1401 21 1 -0.3634 0.4538 0.9220 22 1 -0.3633 0.5717 -0.8540 23 1 -0.3634 -1.0253 -0.0681 24 1 1.6014 1.9129 -0.8603 25 1 1.6935 1.8774 0.9172 26 1 3.8254 0.8478 -1.0105 27 1 3.9178 2.3447 -0.0516 28 1 5.8824 -0.0455 0.2326 29 1 5.8831 1.5862 0.9440 30 1 5.8828 0.1543 2.0012 31 1 5.1662 -1.5352 2.2475 32 1 3.7414 -2.6018 2.2298 33 1 5.1554 -1.5625 4.6942 34 1 3.7302 -2.6287 4.6760 35 1 4.9593 -2.8161 6.5270 36 1 1.6011 -1.7789 1.1110 37 1 1.6936 -0.2821 2.0704 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261165545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:36 Heat of formation + Delta-G solvation = -36.345189 kcal Electronic energy + Delta-G solvation = -16674.594943 eV Core-core repulsion = 14066.023780 eV Total energy + Delta-G solvation = -2608.571163 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.42230 -36.67029 -35.23461 -33.01569 -31.38233 -29.19227 -27.02099 -25.51812 -25.19447 -23.07762 -22.46827 -21.41512 -19.37924 -16.98153 -16.07476 -15.80715 -15.52932 -14.73476 -14.62861 -14.33629 -14.03993 -13.82283 -13.70097 -12.97818 -12.43549 -12.34378 -12.04540 -11.80164 -11.69537 -11.51196 -11.33674 -11.05841 -10.77864 -10.72468 -10.53477 -10.09856 -9.96190 -8.80521 -8.60123 -8.33053 -8.18018 -8.05346 -6.43630 -4.11499 3.44074 3.48291 3.64835 3.97199 4.03357 4.46198 4.76112 4.97934 5.02237 5.21421 5.32398 5.34234 5.43562 5.49852 5.54564 5.59737 5.66389 5.71103 5.82696 5.84889 5.91093 5.93784 6.00286 6.14169 6.18632 6.38001 6.79113 7.01297 7.04468 7.16334 7.28390 7.29551 7.94532 8.22544 8.68942 8.85279 9.58977 10.96697 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.006346 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.915795 B = 4410.871643 C = 4734.714533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.550 5.550 3 C 0.056 3.944 4 C 0.058 3.942 5 N -0.527 5.527 6 C 0.026 3.974 7 C 0.096 3.904 8 H 0.052 0.948 9 C 0.065 3.935 10 O -0.368 6.368 11 C 0.185 3.815 12 C -0.592 4.592 13 H 0.060 0.940 14 C 0.016 3.984 15 N -0.913 5.913 16 Si 1.081 2.919 17 H -0.286 1.286 18 H -0.283 1.283 19 H -0.287 1.287 20 C 0.064 3.936 21 H 0.028 0.972 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.020 0.980 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.040 0.960 33 H -0.007 1.007 34 H -0.008 1.008 35 H 0.267 0.733 36 H 0.075 0.925 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 4.907 -15.491 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.073 4.073 4 C -0.070 4.070 5 N -0.253 5.253 6 C -0.122 4.122 7 C -0.012 4.012 8 H 0.070 0.930 9 C -0.014 4.014 10 O -0.287 6.287 11 C 0.110 3.890 12 C -0.630 4.630 13 H 0.078 0.922 14 C -0.187 4.187 15 N -0.550 5.550 16 Si 0.908 3.092 17 H -0.213 1.213 18 H -0.209 1.209 19 H -0.213 1.213 20 C -0.064 4.064 21 H 0.046 0.954 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.527 5.071 -13.827 15.144 hybrid contribution 0.322 -0.338 -1.761 1.822 sum -3.205 4.732 -15.589 16.603 Atomic orbital electron populations 1.22312 0.87400 1.02089 1.00408 1.62212 1.07764 1.13842 1.43632 1.22150 0.94608 0.89616 1.00878 1.22147 0.94519 0.98422 0.91919 1.62014 1.07682 1.13675 1.41883 1.22379 0.87285 1.01332 1.01173 1.21715 0.94779 0.88644 0.96083 0.93048 1.22355 0.97287 0.94919 0.86825 1.87983 1.72579 1.55550 1.12604 1.20269 0.93394 0.92585 0.82731 1.21916 1.33573 1.16596 0.90901 0.92155 1.25916 0.95471 0.96591 1.00724 1.70766 1.31054 1.18919 1.34225 0.83381 0.75849 0.75320 0.74639 1.21266 1.20885 1.21278 1.22106 0.93531 0.98324 0.92424 0.95363 0.91707 0.91459 0.90723 0.93674 0.94601 0.90449 0.96138 0.91661 0.90589 0.94088 0.94150 0.98966 0.99006 0.92335 0.90667 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.60 60.06 0.58 0.88 16 2 N -0.55 -7.68 4.97 -242.77 -1.21 -8.89 16 3 C 0.06 0.73 5.62 -3.77 -0.02 0.71 16 4 C 0.06 0.77 5.61 -3.76 -0.02 0.75 16 5 N -0.53 -8.54 4.72 -234.74 -1.11 -9.65 16 6 C 0.03 0.38 8.98 60.06 0.54 0.92 16 7 C 0.10 1.59 2.34 -67.66 -0.16 1.43 16 8 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 9 C 0.06 1.24 5.23 37.16 0.19 1.43 16 10 O -0.37 -9.05 9.39 -35.23 -0.33 -9.38 16 11 C 0.18 5.12 5.00 36.01 0.18 5.30 16 12 C -0.59 -17.91 9.43 -34.44 -0.32 -18.23 16 13 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 14 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 15 N -0.91 -28.35 13.65 55.43 0.76 -27.59 16 16 Si 1.08 25.96 29.90 -169.99 -5.08 20.87 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.06 1.04 4.74 -3.77 -0.02 1.02 16 21 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 28 H 0.02 0.26 8.12 -51.93 -0.42 -0.16 16 29 H 0.06 0.83 8.02 -51.93 -0.42 0.41 16 30 H 0.08 1.24 6.55 -51.93 -0.34 0.90 16 31 H 0.04 0.76 6.29 -51.93 -0.33 0.43 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H -0.01 -0.21 8.01 -51.93 -0.42 -0.62 16 34 H -0.01 -0.22 8.01 -51.93 -0.42 -0.63 16 35 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.22 7.53 -51.93 -0.39 0.83 16 LS Contribution 294.85 15.07 4.44 4.44 Total: -1.00 -32.60 294.85 -8.13 -40.72 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -6.45 Total: -5.12 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 0.85 Total: -5.41 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -1.56 Total: -46.13 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.33 Total: -9.38 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.60 -8.13 -40.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.379 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds