Wall clock time and date at job start Mon Mar 30 2020 02:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46949 * 111.00222 * 2 1 4 4 C 1.53049 * 109.36497 * 183.18737 * 3 2 1 5 5 N 1.46964 * 109.38462 * 301.60805 * 4 3 2 6 6 C 1.46896 * 111.01997 * 183.16887 * 5 4 3 7 7 C 1.46960 * 110.87516 * 59.28644 * 5 4 3 8 8 H 1.08994 * 109.48952 * 60.69246 * 7 5 4 9 9 C 1.52995 * 109.48709 * 180.73535 * 7 5 4 10 10 O 1.42905 * 109.47239 * 63.89150 * 9 7 5 11 11 C 1.42901 * 114.00248 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47152 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00031 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99555 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47075 * 269.99598 * 16 14 12 18 18 H 1.48500 * 109.46811 * 150.00018 * 16 14 12 19 19 H 1.48503 * 109.47346 * 30.00404 * 16 14 12 20 20 C 1.46959 * 110.99793 * 123.79783 * 2 1 3 21 21 H 1.08997 * 109.47453 * 296.20343 * 1 2 3 22 22 H 1.09001 * 109.46911 * 56.19712 * 1 2 3 23 23 H 1.08998 * 109.47793 * 176.20003 * 1 2 3 24 24 H 1.09002 * 109.49401 * 303.15286 * 3 2 1 25 25 H 1.08998 * 109.49176 * 63.20070 * 3 2 1 26 26 H 1.08996 * 109.49211 * 61.56824 * 4 3 2 27 27 H 1.09001 * 109.49252 * 181.61254 * 4 3 2 28 28 H 1.09000 * 109.46742 * 289.75398 * 6 5 4 29 29 H 1.08998 * 109.47180 * 49.75774 * 6 5 4 30 30 H 1.08993 * 109.47059 * 169.75792 * 6 5 4 31 31 H 1.08999 * 109.47677 * 303.89550 * 9 7 5 32 32 H 1.08994 * 109.47668 * 183.88960 * 9 7 5 33 33 H 1.08996 * 109.47254 * 60.00335 * 11 10 9 34 34 H 1.09003 * 109.46858 * 300.00111 * 11 10 9 35 35 H 0.96999 * 120.00531 * 0.02562 * 15 14 12 36 36 H 1.09001 * 109.48485 * 56.84271 * 20 2 1 37 37 H 1.08996 * 109.49076 * 296.78267 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3289 -0.0803 5 7 4.0505 0.5656 1.0596 6 6 5.5195 0.5651 1.0593 7 6 3.5234 -0.8062 1.0598 8 1 3.8252 -1.3119 0.1427 9 6 4.0768 -1.5655 2.2673 10 8 3.6053 -0.9555 3.4706 11 6 4.0663 -1.5919 4.6641 12 6 3.5106 -0.8704 5.8649 13 1 2.8692 -0.0120 5.7300 14 6 3.8210 -1.3061 7.1356 15 7 4.6016 -2.3517 7.2998 16 14 3.1327 -0.4113 8.6239 17 1 4.0712 0.6647 9.0322 18 1 2.9631 -1.3715 9.7439 19 1 1.8168 0.1841 8.2787 20 6 1.9956 -0.7632 1.1401 21 1 -0.3634 0.4538 0.9220 22 1 -0.3633 0.5717 -0.8540 23 1 -0.3634 -1.0253 -0.0681 24 1 1.6014 1.9129 -0.8603 25 1 1.6935 1.8774 0.9172 26 1 3.8254 0.8478 -1.0105 27 1 3.9178 2.3447 -0.0516 28 1 5.8824 -0.0455 0.2326 29 1 5.8831 1.5862 0.9440 30 1 5.8828 0.1543 2.0012 31 1 5.1662 -1.5352 2.2475 32 1 3.7414 -2.6018 2.2298 33 1 5.1554 -1.5625 4.6942 34 1 3.7302 -2.6287 4.6760 35 1 4.9593 -2.8161 6.5270 36 1 1.6011 -1.7789 1.1110 37 1 1.6936 -0.2821 2.0704 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:35 Heat of formation + Delta-G solvation = -61.319844 kcal Electronic energy + Delta-G solvation = -16675.677925 eV Core-core repulsion = 14066.023780 eV Total energy + Delta-G solvation = -2609.654146 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66630 -38.44436 -36.46415 -35.21678 -32.76792 -30.28202 -29.01154 -27.13804 -26.29009 -24.73628 -24.21992 -22.65416 -20.64078 -19.21453 -17.57583 -17.28365 -16.90048 -16.03827 -15.88221 -15.77172 -15.65422 -15.53531 -14.97863 -14.64431 -14.11227 -13.65402 -13.45682 -13.25848 -13.18534 -12.83655 -12.59503 -12.52378 -12.39346 -12.30039 -11.92993 -11.77773 -11.45545 -10.85229 -10.84433 -10.32679 -9.46422 -9.22711 -8.84219 -6.54500 1.50695 1.60460 1.80556 2.47897 2.81993 2.90314 3.02621 3.06997 3.76331 3.89014 4.02838 4.18873 4.27596 4.33579 4.37379 4.40710 4.49218 4.53923 4.57601 4.58764 4.68088 4.70367 4.87438 4.89817 4.94627 4.96057 4.97850 5.07717 5.67665 5.88485 5.90421 5.94399 6.11912 6.17674 6.33321 6.68965 7.26022 8.56959 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.006346 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.915795 B = 4410.871643 C = 4734.714533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.054 3.946 4 C 0.060 3.940 5 N -0.557 5.557 6 C 0.029 3.971 7 C 0.103 3.897 8 H 0.072 0.928 9 C 0.057 3.943 10 O -0.382 6.382 11 C 0.197 3.803 12 C -0.619 4.619 13 H 0.049 0.951 14 C -0.028 4.028 15 N -0.928 5.928 16 Si 1.129 2.871 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.272 1.272 20 C 0.070 3.930 21 H 0.016 0.984 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.106 0.894 25 H 0.023 0.977 26 H 0.048 0.952 27 H 0.094 0.906 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.048 0.952 33 H -0.021 1.021 34 H -0.020 1.020 35 H 0.256 0.744 36 H 0.079 0.921 37 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.877 5.892 -16.644 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.074 4.074 4 C -0.068 4.068 5 N -0.283 5.283 6 C -0.118 4.118 7 C -0.005 4.005 8 H 0.090 0.910 9 C -0.021 4.021 10 O -0.301 6.301 11 C 0.121 3.879 12 C -0.657 4.657 13 H 0.067 0.933 14 C -0.226 4.226 15 N -0.565 5.565 16 Si 0.948 3.052 17 H -0.193 1.193 18 H -0.198 1.198 19 H -0.197 1.197 20 C -0.058 4.058 21 H 0.035 0.965 22 H 0.108 0.892 23 H 0.092 0.908 24 H 0.124 0.876 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.112 0.888 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.067 0.933 33 H -0.003 1.003 34 H -0.002 1.002 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.026 6.054 -15.028 16.695 hybrid contribution 0.488 -0.650 -1.518 1.722 sum -3.539 5.404 -16.546 17.762 Atomic orbital electron populations 1.22412 0.85983 1.02991 1.00925 1.62281 1.09086 1.14186 1.41686 1.22261 0.94833 0.89135 1.01152 1.22229 0.94407 0.98933 0.91190 1.61981 1.08707 1.13547 1.44045 1.22333 0.86505 1.02633 1.00357 1.21619 0.94729 0.89147 0.95032 0.91012 1.22666 0.97883 0.95757 0.85755 1.87947 1.72883 1.56025 1.13284 1.19926 0.92273 0.91806 0.83847 1.22244 1.34095 1.16816 0.92536 0.93263 1.27576 0.94641 0.96366 1.03997 1.70892 1.32045 1.19808 1.33732 0.82807 0.76224 0.74892 0.71273 1.19268 1.19840 1.19686 1.21957 0.93682 0.98584 0.91614 0.96495 0.89168 0.90758 0.87625 0.95844 0.93355 0.88780 0.94268 0.89905 0.93405 0.93539 0.93344 1.00325 1.00197 0.93529 0.90216 0.96021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.60 127.69 1.23 1.76 16 2 N -0.55 -14.37 4.97 -921.97 -4.58 -18.95 16 3 C 0.05 1.31 5.62 86.31 0.49 1.79 16 4 C 0.06 1.44 5.61 86.31 0.48 1.92 16 5 N -0.56 -17.43 4.72 -896.57 -4.23 -21.66 16 6 C 0.03 0.81 8.98 127.69 1.15 1.96 16 7 C 0.10 3.33 2.34 44.92 0.10 3.44 16 8 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 9 C 0.06 2.21 5.23 71.98 0.38 2.59 16 10 O -0.38 -19.35 9.39 -148.98 -1.40 -20.75 16 11 C 0.20 11.28 5.00 71.24 0.36 11.64 16 12 C -0.62 -38.31 9.43 25.60 0.24 -38.07 16 13 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 14 C -0.03 -1.70 5.46 84.66 0.46 -1.23 16 15 N -0.93 -58.21 13.65 21.45 0.29 -57.92 16 16 Si 1.13 51.58 29.90 68.60 2.05 53.63 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 C 0.07 2.26 4.74 86.31 0.41 2.67 16 21 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 22 H 0.09 1.49 8.13 -2.39 -0.02 1.47 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.11 1.90 8.13 -2.39 -0.02 1.88 16 25 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 1.93 8.07 -2.39 -0.02 1.91 16 28 H 0.04 0.92 8.12 -2.39 -0.02 0.90 16 29 H 0.08 1.95 8.02 -2.39 -0.02 1.93 16 30 H 0.05 1.57 6.55 -2.39 -0.02 1.55 16 31 H 0.05 1.74 6.29 -2.39 -0.02 1.73 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H -0.02 -1.23 8.01 -2.39 -0.02 -1.25 16 34 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 35 H 0.26 16.17 7.22 -92.71 -0.67 15.51 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.02 0.87 7.53 -2.39 -0.02 0.85 16 Total: -1.00 -70.58 294.85 -1.46 -72.04 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.11 Total: 5.14 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 5.29 Total: -11.54 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -8.51 Total: -98.53 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -1.40 Total: -20.75 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.63 kcal Total: -70.58 -1.46 -72.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.723 kcal (2) G-P(sol) polarization free energy of solvation -70.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds