Wall clock time and date at job start Mon Mar 30 2020 03:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76201 * 99.99986 * 2 1 4 4 N 1.29758 * 124.95672 * 179.97438 * 3 2 1 5 5 C 1.32088 * 116.86021 * 180.02562 * 4 3 2 6 6 C 1.50698 * 122.71011 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47317 * 304.97963 * 6 5 4 8 8 C 1.50701 * 109.47220 * 179.97438 * 7 6 5 9 9 H 1.07995 * 119.99770 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99671 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00094 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99578 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47157 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47146 * 120.00093 * 12 10 8 15 15 H 1.48496 * 109.47040 * 240.00051 * 12 10 8 16 16 C 1.33343 * 114.58479 * 0.02562 * 5 4 3 17 17 S 1.70968 * 124.95174 * 0.02562 * 3 2 1 18 18 H 1.08992 * 109.47121 * 59.99843 * 1 2 3 19 19 H 1.09003 * 109.47068 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47285 * 299.99926 * 1 2 3 21 21 H 1.09005 * 109.46687 * 64.97575 * 6 5 4 22 22 H 1.08997 * 109.46938 * 184.97335 * 6 5 4 23 23 H 1.09003 * 109.47194 * 300.00189 * 7 6 5 24 24 H 1.09003 * 109.47413 * 59.99387 * 7 6 5 25 25 H 0.97005 * 119.99824 * 180.02562 * 11 10 8 26 26 H 1.07996 * 125.94694 * 180.02562 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 3.2924 2.2827 0.0005 5 6 3.3363 3.6029 0.0009 6 6 4.6306 4.3747 0.0021 7 6 5.4914 3.9253 1.1844 8 6 6.7860 4.6966 1.1851 9 1 6.9756 5.4340 0.4192 10 6 7.7278 4.4617 2.1644 11 7 7.4966 3.5642 3.0973 12 14 9.3323 5.4184 2.1657 13 1 9.3471 6.3617 1.0189 14 1 9.4531 6.1805 3.4345 15 1 10.4718 4.4739 2.0452 16 6 2.1428 4.1976 0.0014 17 16 0.9060 2.9431 0.0006 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 5.1659 4.1876 -0.9289 22 1 4.4183 5.4400 0.0913 23 1 4.9561 4.1122 2.1153 24 1 5.7036 2.8599 1.0951 25 1 8.1590 3.3992 3.7865 26 1 1.9653 5.2629 0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261220217.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:59 Heat of formation + Delta-G solvation = 29.621282 kcal Electronic energy + Delta-G solvation = -11234.822979 eV Core-core repulsion = 9145.233228 eV Total energy + Delta-G solvation = -2089.589752 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.40044 -33.74830 -31.73983 -29.60771 -28.98644 -25.65176 -24.45003 -21.35110 -19.42224 -18.07563 -16.40441 -16.25357 -14.88984 -14.74110 -14.37663 -13.71071 -13.49997 -13.39595 -13.00813 -12.60106 -12.28762 -11.40939 -11.05265 -10.93202 -10.79320 -10.52346 -10.04183 -9.70628 -9.46304 -9.21587 -9.06638 -8.74393 -8.29630 -7.50435 -5.94629 -3.97817 0.85601 1.13710 1.24159 1.89113 2.37903 3.14823 3.34312 3.41403 3.45466 4.49584 4.80600 4.81357 4.91922 5.40601 5.40888 5.50568 5.75770 6.32154 6.44332 6.61556 7.03822 7.73811 7.86942 8.02541 8.07526 8.44206 9.09561 9.65576 11.16586 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.049187 B = 0.005718 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.116897 B = 4895.485817 C = 5290.214745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 S 0.006 5.994 3 C 0.018 3.982 4 N -0.432 5.432 5 C 0.108 3.892 6 C -0.045 4.045 7 C 0.030 3.970 8 C -0.522 4.522 9 H 0.057 0.943 10 C 0.057 3.943 11 N -0.892 5.892 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C -0.263 4.263 17 S 0.084 5.916 18 H 0.088 0.912 19 H 0.117 0.883 20 H 0.089 0.911 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.013 0.987 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.353 -4.067 -6.581 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.340 4.340 2 S 0.236 5.764 3 C -0.369 4.369 4 N -0.149 5.149 5 C -0.025 4.025 6 C -0.085 4.085 7 C -0.007 4.007 8 C -0.560 4.560 9 H 0.075 0.925 10 C -0.144 4.144 11 N -0.531 5.531 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.404 4.404 17 S 0.333 5.667 18 H 0.107 0.893 19 H 0.135 0.865 20 H 0.108 0.892 21 H 0.090 0.910 22 H 0.087 0.913 23 H 0.032 0.968 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.181 -5.492 -6.429 18.257 hybrid contribution 0.829 2.094 0.194 2.260 sum -15.352 -3.398 -6.235 16.914 Atomic orbital electron populations 1.23831 0.95925 1.07764 1.06451 1.85734 1.04222 0.94651 1.91814 1.28436 0.95033 1.04058 1.09402 1.66428 1.22380 1.11034 1.15083 1.20954 0.97231 0.87550 0.96757 1.20551 0.88866 0.96457 1.02633 1.19035 0.93069 0.97648 0.90966 1.21267 1.01641 1.21582 1.11541 0.92512 1.25024 0.98488 0.95339 0.95578 1.69996 1.35129 1.33242 1.14780 0.86536 0.83729 0.79888 0.77838 1.19720 1.21071 1.20997 1.26704 0.93763 1.03660 1.16313 1.83530 1.13012 0.98466 1.71684 0.89304 0.86476 0.89213 0.91025 0.91264 0.96813 0.95322 0.93068 0.80522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.44 101.05 0.95 -0.44 15 2 S 0.01 0.08 22.96 -107.50 -2.47 -2.39 15 3 C 0.02 0.30 7.59 51.89 0.39 0.70 15 4 N -0.43 -9.01 10.41 -10.94 -0.11 -9.13 15 5 C 0.11 2.16 6.07 -84.19 -0.51 1.65 15 6 C -0.04 -0.98 5.65 -27.89 -0.16 -1.14 15 7 C 0.03 0.83 4.87 -27.89 -0.14 0.69 15 8 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 15 9 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 11 N -0.89 -27.74 13.29 55.43 0.74 -27.01 15 12 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 15 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 16 C -0.26 -4.28 11.04 29.02 0.32 -3.96 15 17 S 0.08 1.16 21.54 -107.50 -2.32 -1.16 15 18 H 0.09 0.66 7.97 -51.92 -0.41 0.24 15 19 H 0.12 0.67 8.14 -51.91 -0.42 0.25 15 20 H 0.09 0.71 7.97 -51.91 -0.41 0.29 15 21 H 0.07 1.54 8.14 -51.93 -0.42 1.12 15 22 H 0.07 1.37 8.03 -51.93 -0.42 0.95 15 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 15 24 H 0.03 0.86 8.08 -51.93 -0.42 0.44 15 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 26 H 0.18 2.37 8.06 -52.49 -0.42 1.95 15 LS Contribution 258.86 15.07 3.90 3.90 Total: -1.00 -33.04 258.86 -7.72 -40.76 By element: Atomic # 1 Polarization: -2.74 SS G_CDS: -2.90 Total: -5.64 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 0.45 Total: -16.39 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.62 Total: -36.14 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -4.78 Total: -3.55 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.04 -7.72 -40.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220217.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.384 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds