Wall clock time and date at job start Mon Mar 30 2020 03:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34758 * 116.99994 * 2 1 4 4 S 1.70628 * 124.60516 * 0.29066 * 3 2 1 5 5 C 1.75818 * 91.59284 * 180.02562 * 4 3 2 6 6 C 1.36420 * 125.46112 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00151 * 190.99011 * 6 5 4 8 8 C 1.46611 * 119.99810 * 10.99602 * 6 5 4 9 9 N 1.29538 * 120.00060 * 200.47797 * 8 6 5 10 10 Si 1.86804 * 119.99886 * 20.48013 * 8 6 5 11 11 H 1.48500 * 109.46932 * 269.99989 * 10 8 6 12 12 H 1.48502 * 109.47043 * 29.99999 * 10 8 6 13 13 H 1.48501 * 109.47161 * 150.00055 * 10 8 6 14 14 C 1.40539 * 109.08185 * 359.67838 * 5 4 3 15 15 C 1.33790 * 113.42943 * 0.23972 * 14 5 4 16 16 N 1.48014 * 122.44412 * 179.97438 * 15 14 5 17 17 O 1.31696 * 120.00364 * 0.02591 * 16 15 14 18 18 O 1.31698 * 119.99828 * 180.02562 * 16 15 14 19 19 H 1.09000 * 109.47329 * 59.99456 * 1 2 3 20 20 H 1.08995 * 109.47483 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47059 * 299.99954 * 1 2 3 22 22 H 0.97004 * 119.99755 * 354.69268 * 9 8 6 23 23 H 1.07997 * 123.28534 * 180.20930 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 16 1.2523 2.7017 0.0071 5 6 2.7752 3.5805 0.0015 6 6 2.9053 4.9384 0.0032 7 1 3.8699 5.3888 -0.1789 8 6 1.7356 5.7866 0.2523 9 7 1.7423 7.0260 -0.1241 10 14 0.2356 5.0798 1.1126 11 1 -0.6964 4.5191 0.1016 12 1 0.6604 4.0044 2.0445 13 1 -0.4494 6.1540 1.8755 14 6 3.8369 2.6597 0.0018 15 6 3.4346 1.3838 0.0010 16 7 4.3871 0.2508 0.0006 17 8 5.6839 0.4807 0.0015 18 8 3.9379 -0.9871 -0.0006 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.5476 7.4142 -0.5007 23 1 4.8762 2.9535 0.0021 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261291380.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:24 Heat of formation + Delta-G solvation = -4.267696 kcal Electronic energy + Delta-G solvation = -13609.226184 eV Core-core repulsion = 10939.580930 eV Total energy + Delta-G solvation = -2669.645253 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.024 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.71453 -37.48055 -35.96960 -34.22217 -33.24728 -30.22052 -27.30280 -26.15288 -24.35031 -21.61441 -19.74230 -19.07991 -17.59043 -17.20003 -16.35071 -15.54086 -15.29872 -14.61816 -14.47097 -13.91178 -13.11723 -12.94772 -12.36239 -12.06560 -11.72883 -11.39244 -11.15877 -10.75753 -10.46108 -10.32719 -10.18175 -9.92452 -9.69653 -9.55663 -8.35342 -8.10197 -7.77022 -4.90274 0.53370 1.66084 2.01381 2.37211 2.63043 2.66738 2.88804 3.15933 3.34560 3.42946 3.75423 4.25213 5.35311 5.40507 5.65404 5.97103 6.27459 6.52206 6.74314 6.81649 7.04983 7.35616 7.48657 7.62304 7.78253 8.03305 9.00160 Molecular weight = 229.02amu Principal moments of inertia in cm(-1) A = 0.033264 B = 0.011312 C = 0.008691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.560918 B = 2474.762204 C = 3220.890271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.266 6.266 3 C -0.113 4.113 4 S 0.059 5.941 5 C 0.037 3.963 6 C -0.403 4.403 7 H 0.110 0.890 8 C 0.041 3.959 9 N -0.731 5.731 10 Si 0.970 3.030 11 H -0.229 1.229 12 H -0.216 1.216 13 H -0.232 1.232 14 C -0.345 4.345 15 C 0.063 3.937 16 N 0.019 4.981 17 O -0.236 6.236 18 O -0.206 6.206 19 H 0.056 0.944 20 H 0.100 0.900 21 H 0.055 0.945 22 H 0.306 0.694 23 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.490 -0.388 1.263 7.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.179 6.179 3 C -0.276 4.276 4 S 0.313 5.687 5 C -0.081 4.081 6 C -0.439 4.439 7 H 0.128 0.872 8 C -0.192 4.192 9 N -0.347 5.347 10 Si 0.789 3.211 11 H -0.155 1.155 12 H -0.139 1.139 13 H -0.156 1.156 14 C -0.368 4.368 15 C -0.036 4.036 16 N 0.480 4.520 17 O -0.415 6.415 18 O -0.394 6.394 19 H 0.074 0.926 20 H 0.119 0.881 21 H 0.073 0.927 22 H 0.119 0.881 23 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.603 0.628 1.699 10.756 hybrid contribution 3.231 -0.820 -0.648 3.396 sum -7.372 -0.193 1.050 7.449 Atomic orbital electron populations 1.23476 0.78804 1.03703 1.01442 1.86218 1.19672 1.22554 1.89462 1.22630 0.92828 0.90538 1.21562 1.83176 1.11732 0.95276 1.78471 1.20723 0.90876 0.95999 1.00516 1.21090 0.98634 0.90092 1.34086 0.87194 1.29114 1.02717 0.94085 0.93320 1.70008 1.31787 1.14007 1.18943 0.84370 0.75070 0.80397 0.81309 1.15476 1.13946 1.15567 1.18679 0.99510 0.87813 1.30798 1.18517 0.83552 0.84717 1.16859 1.50153 1.02969 1.03547 0.95339 1.96158 0.93313 1.92833 1.59206 1.96176 1.83247 1.02997 1.56957 0.92573 0.88149 0.92660 0.88054 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.32 101.05 1.04 1.37 14 2 O -0.27 -5.67 9.27 -33.99 -0.32 -5.99 14 3 C -0.11 -2.61 7.11 30.76 0.22 -2.39 14 4 S 0.06 1.22 15.38 -107.50 -1.65 -0.43 14 5 C 0.04 0.86 5.82 -39.37 -0.23 0.63 14 6 C -0.40 -9.03 9.80 -36.86 -0.36 -9.39 14 7 H 0.11 2.48 8.06 -52.48 -0.42 2.05 14 8 C 0.04 0.85 5.67 -15.14 -0.09 0.77 14 9 N -0.73 -15.23 13.58 55.99 0.76 -14.47 14 10 Si 0.97 16.95 24.90 -169.99 -4.23 12.72 14 11 H -0.23 -3.73 6.94 56.52 0.39 -3.34 14 12 H -0.22 -3.74 6.49 56.52 0.37 -3.37 14 13 H -0.23 -3.77 7.11 56.52 0.40 -3.37 14 14 C -0.35 -8.53 9.75 -40.28 -0.39 -8.93 14 15 C 0.06 1.61 6.84 -81.49 -0.56 1.05 14 16 N 0.02 0.49 4.98 33.21 0.17 0.66 14 17 O -0.24 -6.19 19.44 -31.57 -0.61 -6.80 14 18 O -0.21 -5.37 18.56 -38.01 -0.71 -6.08 14 19 H 0.06 0.77 8.02 -51.93 -0.42 0.36 14 20 H 0.10 1.18 8.14 -51.93 -0.42 0.75 14 21 H 0.05 0.76 8.01 -51.93 -0.42 0.34 14 22 H 0.31 6.07 8.74 -40.82 -0.36 5.71 14 23 H 0.14 3.41 7.87 -52.49 -0.41 3.00 14 LS Contribution 230.81 15.07 3.48 3.48 Total: -1.00 -26.90 230.81 -4.77 -31.67 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -1.29 Total: 2.13 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -0.37 Total: -16.89 kcal Atomic # 7 Polarization: -14.73 SS G_CDS: 0.93 Total: -13.81 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -1.63 Total: -18.87 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -4.23 Total: 12.72 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.65 Total: -0.43 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -26.90 -4.77 -31.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291380.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.404 kcal (2) G-P(sol) polarization free energy of solvation -26.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds