Wall clock time and date at job start Mon Mar 30 2020 03:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34758 * 116.99994 * 2 1 4 4 S 1.70628 * 124.60516 * 0.29066 * 3 2 1 5 5 C 1.75818 * 91.59284 * 180.02562 * 4 3 2 6 6 C 1.36420 * 125.46112 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00151 * 190.99011 * 6 5 4 8 8 C 1.46611 * 119.99810 * 10.99602 * 6 5 4 9 9 N 1.29538 * 120.00060 * 200.47797 * 8 6 5 10 10 Si 1.86804 * 119.99886 * 20.48013 * 8 6 5 11 11 H 1.48500 * 109.46932 * 269.99989 * 10 8 6 12 12 H 1.48502 * 109.47043 * 29.99999 * 10 8 6 13 13 H 1.48501 * 109.47161 * 150.00055 * 10 8 6 14 14 C 1.40539 * 109.08185 * 359.67838 * 5 4 3 15 15 C 1.33790 * 113.42943 * 0.23972 * 14 5 4 16 16 N 1.48014 * 122.44412 * 179.97438 * 15 14 5 17 17 O 1.31696 * 120.00364 * 0.02591 * 16 15 14 18 18 O 1.31698 * 119.99828 * 180.02562 * 16 15 14 19 19 H 1.09000 * 109.47329 * 59.99456 * 1 2 3 20 20 H 1.08995 * 109.47483 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47059 * 299.99954 * 1 2 3 22 22 H 0.97004 * 119.99755 * 354.69268 * 9 8 6 23 23 H 1.07997 * 123.28534 * 180.20930 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 16 1.2523 2.7017 0.0071 5 6 2.7752 3.5805 0.0015 6 6 2.9053 4.9384 0.0032 7 1 3.8699 5.3888 -0.1789 8 6 1.7356 5.7866 0.2523 9 7 1.7423 7.0260 -0.1241 10 14 0.2356 5.0798 1.1126 11 1 -0.6964 4.5191 0.1016 12 1 0.6604 4.0044 2.0445 13 1 -0.4494 6.1540 1.8755 14 6 3.8369 2.6597 0.0018 15 6 3.4346 1.3838 0.0010 16 7 4.3871 0.2508 0.0006 17 8 5.6839 0.4807 0.0015 18 8 3.9379 -0.9871 -0.0006 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.5476 7.4142 -0.5007 23 1 4.8762 2.9535 0.0021 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261291380.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:24 Heat of formation + Delta-G solvation = -20.964986 kcal Electronic energy + Delta-G solvation = -13609.950232 eV Core-core repulsion = 10939.580930 eV Total energy + Delta-G solvation = -2670.369302 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.024 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.54128 -39.25923 -37.76087 -35.90124 -35.19068 -31.97264 -28.68641 -28.03835 -26.04573 -23.40350 -21.41342 -20.89196 -19.31943 -19.08494 -18.14633 -17.25776 -16.98699 -16.34952 -15.91166 -15.47216 -14.82006 -14.62589 -13.96306 -13.60198 -13.09115 -12.92294 -12.64169 -12.37140 -12.25983 -12.06966 -11.97034 -11.71488 -11.59660 -11.13166 -10.06987 -9.81573 -9.46035 -6.67608 -1.43820 -0.10166 0.25838 0.59116 0.91045 1.20418 1.35609 1.69193 1.72328 1.97874 2.17968 2.54995 4.01721 4.29814 4.30253 4.47395 4.64624 4.78936 4.92631 5.01753 5.26591 5.58155 5.71190 5.89976 6.03616 6.17871 7.35592 Molecular weight = 229.02amu Principal moments of inertia in cm(-1) A = 0.033264 B = 0.011312 C = 0.008691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.560918 B = 2474.762204 C = 3220.890271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.285 6.285 3 C -0.078 4.078 4 S 0.150 5.850 5 C 0.017 3.983 6 C -0.415 4.415 7 H 0.093 0.907 8 C 0.022 3.978 9 N -0.733 5.733 10 Si 0.970 3.030 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.204 1.204 14 C -0.386 4.386 15 C 0.027 3.973 16 N 0.023 4.977 17 O -0.285 6.285 18 O -0.224 6.224 19 H 0.074 0.926 20 H 0.136 0.864 21 H 0.075 0.925 22 H 0.305 0.695 23 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 -0.169 1.597 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.197 6.197 3 C -0.243 4.243 4 S 0.404 5.596 5 C -0.101 4.101 6 C -0.450 4.450 7 H 0.111 0.889 8 C -0.209 4.209 9 N -0.349 5.349 10 Si 0.783 3.217 11 H -0.121 1.121 12 H -0.134 1.134 13 H -0.126 1.126 14 C -0.409 4.409 15 C -0.075 4.075 16 N 0.469 4.531 17 O -0.451 6.451 18 O -0.407 6.407 19 H 0.092 0.908 20 H 0.154 0.846 21 H 0.094 0.906 22 H 0.119 0.881 23 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.387 0.815 2.015 14.550 hybrid contribution 4.096 -0.776 -0.768 4.239 sum -10.291 0.039 1.247 10.366 Atomic orbital electron populations 1.24070 0.74705 1.06969 1.03245 1.86237 1.23778 1.21893 1.87821 1.23351 0.92876 0.92744 1.15347 1.82806 1.08274 0.91875 1.76673 1.20832 0.92424 0.96180 1.00667 1.21210 0.99021 0.90366 1.34378 0.88943 1.30119 1.03871 0.93778 0.93115 1.70044 1.31932 1.14099 1.18834 0.84499 0.73719 0.81523 0.81927 1.12130 1.13400 1.12610 1.18541 0.99332 0.88368 1.34630 1.18872 0.84561 0.84625 1.19413 1.50237 1.03061 1.03674 0.96158 1.96131 0.93904 1.92877 1.62232 1.96116 1.83145 1.03585 1.57877 0.90755 0.84559 0.90625 0.88093 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.11 10.32 113.37 1.17 1.28 14 2 O -0.28 -11.21 9.27 -63.06 -0.58 -11.80 14 3 C -0.08 -3.42 7.11 67.84 0.48 -2.94 14 4 S 0.15 5.64 15.38 -56.49 -0.87 4.77 14 5 C 0.02 0.79 5.82 22.41 0.13 0.93 14 6 C -0.41 -18.49 9.80 24.03 0.24 -18.25 14 7 H 0.09 4.32 8.06 -2.91 -0.02 4.30 14 8 C 0.02 0.87 5.67 87.22 0.49 1.37 14 9 N -0.73 -29.25 13.58 23.23 0.32 -28.94 14 10 Si 0.97 29.43 24.90 68.60 1.71 31.14 14 11 H -0.20 -5.12 6.94 99.48 0.69 -4.43 14 12 H -0.21 -6.29 6.49 99.48 0.65 -5.65 14 13 H -0.20 -5.51 7.11 99.48 0.71 -4.80 14 14 C -0.39 -19.67 9.75 21.82 0.21 -19.46 14 15 C 0.03 1.40 6.84 35.38 0.24 1.64 14 16 N 0.02 1.23 4.98 -48.86 -0.24 0.99 14 17 O -0.29 -15.94 19.44 3.52 0.07 -15.87 14 18 O -0.22 -11.92 18.56 9.68 0.18 -11.74 14 19 H 0.07 1.61 8.02 -2.39 -0.02 1.59 14 20 H 0.14 2.42 8.14 -2.39 -0.02 2.40 14 21 H 0.08 1.61 8.01 -2.39 -0.02 1.59 14 22 H 0.31 11.90 8.74 -92.71 -0.81 11.09 14 23 H 0.12 6.30 7.87 -2.91 -0.02 6.28 14 Total: -1.00 -59.19 230.81 4.67 -54.52 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 1.13 Total: 12.37 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 2.97 Total: -35.44 kcal Atomic # 7 Polarization: -28.02 SS G_CDS: 0.07 Total: -27.95 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -0.34 Total: -39.41 kcal Atomic # 14 Polarization: 29.43 SS G_CDS: 1.71 Total: 31.14 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -0.87 Total: 4.77 kcal Total: -59.19 4.67 -54.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291380.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.558 kcal (2) G-P(sol) polarization free energy of solvation -59.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds