Wall clock time and date at job start Mon Mar 30 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30782 * 1 3 3 Si 1.86796 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47063 * 275.26023 * 3 2 1 5 5 H 1.48496 * 109.47426 * 35.26018 * 3 2 1 6 6 H 1.48507 * 109.47047 * 155.26512 * 3 2 1 7 7 C 1.39989 * 119.99796 * 180.27559 * 2 1 3 8 8 H 1.07990 * 119.99864 * 173.32039 * 7 2 1 9 9 C 1.41202 * 119.99772 * 353.32284 * 7 2 1 10 10 C 1.40770 * 119.74532 * 185.97792 * 9 7 2 11 11 C 1.38091 * 118.83989 * 179.77449 * 10 9 7 12 12 C 1.40172 * 118.70570 * 0.50502 * 11 10 9 13 13 C 1.39122 * 119.30642 * 359.73363 * 12 11 10 14 14 N 1.31477 * 120.85182 * 0.02562 * 13 12 11 15 15 O 1.36134 * 108.44805 * 179.73233 * 12 11 10 16 16 C 1.44010 * 105.56805 * 17.22192 * 15 12 11 17 17 F 1.39899 * 110.54239 * 91.53839 * 16 15 12 18 18 F 1.39897 * 110.54285 * 214.18991 * 16 15 12 19 19 O 1.36054 * 132.61641 * 180.19894 * 11 10 9 20 20 H 0.97000 * 120.00148 * 359.72883 * 1 2 3 21 21 H 1.08006 * 120.57865 * 0.02562 * 10 9 7 22 22 H 1.08002 * 119.57676 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.3782 2.1105 -1.3942 5 1 1.4994 2.6180 0.8082 6 1 3.5906 1.4105 0.5858 7 6 2.0077 -1.2124 -0.0058 8 1 3.0821 -1.2150 -0.1146 9 6 1.3088 -2.4317 0.1305 10 6 2.0250 -3.6376 0.2508 11 6 1.3227 -4.8186 0.3879 12 6 -0.0783 -4.7723 0.3912 13 6 -0.7193 -3.5443 0.2627 14 7 -0.0283 -2.4327 0.1383 15 8 -0.5509 -6.0413 0.5307 16 6 0.5600 -6.8158 1.0207 17 9 0.5622 -6.8405 2.4194 18 9 0.5154 -8.1167 0.5081 19 8 1.7161 -6.1137 0.5257 20 1 -0.4850 0.8400 0.0040 21 1 3.1050 -3.6386 0.2402 22 1 -1.7986 -3.5035 0.2652 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261301374.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:07 Heat of formation + Delta-G solvation = -151.539674 kcal Electronic energy + Delta-G solvation = -15534.477524 eV Core-core repulsion = 12304.605692 eV Total energy + Delta-G solvation = -3229.871832 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.034 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.52863 -48.97709 -42.90307 -39.39844 -37.80130 -35.49737 -32.27677 -31.35264 -27.75133 -26.16113 -24.34357 -23.92526 -20.75117 -20.24053 -19.89455 -19.00838 -17.69897 -17.35460 -16.63481 -16.37521 -15.85286 -15.72020 -15.32165 -15.21504 -14.97867 -14.81946 -14.69945 -14.11391 -13.76585 -13.23313 -12.90920 -12.77443 -12.50265 -11.87847 -11.18506 -10.14222 -10.01747 -9.57150 -8.54335 -6.71259 0.40126 0.52960 0.76780 1.41799 1.47399 1.55917 1.63252 2.20995 2.62588 2.91647 3.09792 3.53642 3.63062 3.88521 4.10871 4.54486 4.63849 5.02304 5.09062 5.21590 5.25293 5.85122 6.07818 6.42394 6.66142 7.80624 8.25178 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.068650 B = 0.006999 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.770572 B = 3999.770857 C = 4210.485495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.020 3.980 3 Si 0.997 3.003 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.419 4.419 8 H 0.109 0.891 9 C 0.230 3.770 10 C -0.246 4.246 11 C 0.080 3.920 12 C -0.220 4.220 13 C 0.182 3.818 14 N -0.493 5.493 15 O -0.293 6.293 16 C 0.563 3.437 17 F -0.165 7.165 18 F -0.121 7.121 19 O -0.304 6.304 20 H 0.291 0.709 21 H 0.136 0.864 22 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 -2.211 1.029 2.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.205 4.205 3 Si 0.816 3.184 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.174 1.174 7 C -0.448 4.448 8 H 0.127 0.873 9 C 0.108 3.892 10 C -0.269 4.269 11 C 0.032 3.968 12 C -0.268 4.268 13 C 0.015 3.985 14 N -0.209 5.209 15 O -0.213 6.213 16 C 0.454 3.546 17 F -0.147 7.147 18 F -0.102 7.102 19 O -0.224 6.224 20 H 0.102 0.898 21 H 0.154 0.846 22 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.992 -1.541 0.882 2.034 hybrid contribution 0.589 -1.002 0.278 1.195 sum 1.581 -2.543 1.159 3.211 Atomic orbital electron populations 1.70157 1.09121 1.30581 1.25406 1.27145 0.95846 1.04968 0.92502 0.84945 0.79128 0.74760 0.79553 1.18508 1.19171 1.17434 1.20180 0.96314 0.89469 1.38836 0.87294 1.18831 0.88342 0.91994 0.90081 1.21035 1.00579 0.87808 1.17510 1.19662 0.92873 0.82973 1.01323 1.20576 0.91887 0.85423 1.28891 1.22367 1.00803 0.82797 0.92534 1.69034 1.07935 1.23507 1.20383 1.87313 1.32907 1.19160 1.81881 1.21982 0.78491 0.78694 0.75452 1.93198 1.95602 1.96406 1.29476 1.93179 1.95561 1.34447 1.87014 1.87340 1.34765 1.19509 1.80757 0.89832 0.84647 0.81922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -34.97 11.48 21.83 0.25 -34.72 14 2 C 0.02 0.91 5.49 85.27 0.47 1.38 14 3 Si 1.00 32.86 29.56 68.60 2.03 34.88 14 4 H -0.26 -8.31 7.11 99.48 0.71 -7.60 14 5 H -0.27 -8.52 7.11 99.48 0.71 -7.82 14 6 H -0.25 -7.94 7.11 99.48 0.71 -7.23 14 7 C -0.42 -19.95 9.12 23.42 0.21 -19.74 14 8 H 0.11 4.67 7.85 -2.92 -0.02 4.65 14 9 C 0.23 11.69 6.55 40.20 0.26 11.95 14 10 C -0.25 -11.64 9.85 22.85 0.23 -11.42 14 11 C 0.08 3.78 7.21 22.70 0.16 3.94 14 12 C -0.22 -10.25 7.23 22.95 0.17 -10.08 14 13 C 0.18 8.51 11.21 84.96 0.95 9.46 14 14 N -0.49 -25.41 7.87 -188.78 -1.49 -26.89 14 15 O -0.29 -12.68 11.32 -71.82 -0.81 -13.50 14 16 C 0.56 22.39 3.69 113.37 0.42 22.80 14 17 F -0.16 -6.29 17.57 44.97 0.79 -5.50 14 18 F -0.12 -4.21 17.57 44.97 0.79 -3.42 14 19 O -0.30 -13.20 11.33 -70.92 -0.80 -14.01 14 20 H 0.29 12.31 8.30 -92.71 -0.77 11.54 14 21 H 0.14 5.75 8.06 -2.91 -0.02 5.73 14 22 H 0.16 6.54 8.06 -2.91 -0.02 6.51 14 Total: -1.00 -53.98 220.63 4.91 -49.07 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.28 Total: 5.79 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 2.87 Total: 8.29 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -1.23 Total: -61.61 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -1.62 Total: -27.50 kcal Atomic # 9 Polarization: -10.50 SS G_CDS: 1.58 Total: -8.92 kcal Atomic # 14 Polarization: 32.86 SS G_CDS: 2.03 Total: 34.88 kcal Total: -53.98 4.91 -49.07 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301374.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.472 kcal (2) G-P(sol) polarization free energy of solvation -53.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds