Wall clock time and date at job start Mon Mar 30 2020 03:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 N 1.46507 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.38449 * 120.00278 * 180.02562 * 10 9 7 12 12 N 1.32469 * 119.17392 * 359.72828 * 11 10 9 13 13 C 1.32458 * 120.89383 * 179.76474 * 12 11 10 14 14 C 1.38312 * 119.25200 * 0.50355 * 13 12 11 15 15 Cl 1.73595 * 120.75679 * 179.73174 * 14 13 12 16 16 C 1.39482 * 118.48749 * 359.75277 * 14 13 12 17 17 O 1.35536 * 120.47090 * 180.02562 * 16 14 13 18 18 N 1.32451 * 119.17640 * 180.02562 * 11 10 9 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 21 21 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 22 22 H 0.97004 * 119.99551 * 0.02562 * 10 9 7 23 23 H 1.08001 * 120.37365 * 180.23511 * 13 12 11 24 24 H 0.96697 * 113.99463 * 269.97769 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 7 3.9999 -2.5753 -0.0032 11 6 5.3611 -2.8283 -0.0076 12 7 6.2073 -1.8092 -0.0194 13 6 7.5163 -2.0120 -0.0192 14 6 7.9994 -3.3080 -0.0170 15 17 9.7073 -3.6188 -0.0237 16 6 7.0831 -4.3596 -0.0098 17 8 7.5122 -5.6452 -0.0068 18 7 5.7846 -4.0833 -0.0057 19 1 -0.4850 0.8401 0.0004 20 1 3.8712 -0.6827 -0.8987 21 1 3.8785 -0.6777 0.8813 22 1 3.3696 -3.3126 0.0015 23 1 8.1986 -1.1748 -0.0252 24 1 7.6331 -6.0214 -0.8894 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306171506.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:38 Heat of formation + Delta-G solvation = -13.588075 kcal Electronic energy + Delta-G solvation = -13143.875978 eV Core-core repulsion = 10504.075607 eV Total energy + Delta-G solvation = -2639.800371 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.14929 -38.95402 -37.59326 -36.87628 -34.74922 -34.17832 -31.56060 -29.31426 -25.60371 -24.84296 -23.31949 -20.26311 -19.72384 -18.82967 -17.72323 -17.26623 -16.75469 -16.55214 -15.68660 -15.37513 -14.99774 -14.48463 -14.43473 -13.27670 -13.25291 -13.00964 -12.65996 -12.28323 -12.06283 -11.87665 -11.83040 -11.66584 -11.06531 -10.77153 -10.25597 -9.00950 -8.38255 -6.47409 -0.15020 -0.01565 1.03916 1.39043 1.40019 1.53148 1.80266 2.31485 2.47762 2.66789 2.97532 3.29806 3.57718 3.90166 4.38273 4.70281 4.94307 5.06625 5.25655 5.55363 5.90610 6.11999 6.44780 6.48939 6.60420 7.12291 7.26566 8.76964 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.054123 B = 0.005980 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.213838 B = 4680.962779 C = 5180.504787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.023 3.977 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.246 1.246 7 C -0.556 4.556 8 H 0.049 0.951 9 C 0.253 3.747 10 N -0.671 5.671 11 C 0.578 3.422 12 N -0.583 5.583 13 C 0.225 3.775 14 C -0.235 4.235 15 Cl -0.026 7.026 16 C 0.417 3.583 17 O -0.470 6.470 18 N -0.606 5.606 19 H 0.273 0.727 20 H 0.026 0.974 21 H 0.025 0.975 22 H 0.414 0.586 23 H 0.212 0.788 24 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.463 -5.047 -1.869 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.177 4.177 3 Si 0.768 3.232 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.169 1.169 7 C -0.594 4.594 8 H 0.067 0.933 9 C 0.130 3.870 10 N -0.303 5.303 11 C 0.221 3.779 12 N -0.309 5.309 13 C 0.057 3.943 14 C -0.272 4.272 15 Cl 0.002 6.998 16 C 0.226 3.774 17 O -0.281 6.281 18 N -0.342 5.342 19 H 0.082 0.918 20 H 0.044 0.956 21 H 0.043 0.957 22 H 0.251 0.749 23 H 0.228 0.772 24 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 18.351 -4.588 -1.293 18.960 hybrid contribution 0.394 -0.155 -0.435 0.607 sum 18.745 -4.742 -1.729 19.413 Atomic orbital electron populations 1.70008 1.08109 1.28787 1.50491 1.25701 0.95597 1.03141 0.93245 0.85731 0.79598 0.78183 0.79656 1.18732 1.20349 1.16919 1.21304 0.90370 0.94418 1.53307 0.93326 1.19178 0.92604 0.78465 0.96773 1.44695 1.00602 1.10500 1.74512 1.19275 0.87704 0.83555 0.87399 1.68225 1.04009 1.34235 1.24413 1.23474 0.90132 0.95656 0.85067 1.22396 0.88187 0.95722 1.20916 1.98345 1.08140 1.95923 1.97408 1.18926 0.85262 0.85752 0.87462 1.84675 1.85449 1.21813 1.36119 1.67456 1.18035 1.22123 1.26540 0.91823 0.95605 0.95667 0.74892 0.77201 0.70719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.91 13.96 21.45 0.30 -55.61 14 2 C 0.02 1.29 5.47 84.66 0.46 1.75 14 3 Si 0.95 42.04 27.47 68.60 1.88 43.93 14 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 14 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 14 6 H -0.25 -10.33 6.54 99.48 0.65 -9.68 14 7 C -0.56 -30.64 9.83 25.60 0.25 -30.39 14 8 H 0.05 2.91 7.84 -2.92 -0.02 2.89 14 9 C 0.25 11.85 4.47 85.63 0.38 12.23 14 10 N -0.67 -28.14 5.70 -354.79 -2.02 -30.17 14 11 C 0.58 21.84 8.43 261.49 2.20 24.04 14 12 N -0.58 -20.27 9.58 -198.11 -1.90 -22.16 14 13 C 0.22 5.77 11.10 84.62 0.94 6.71 14 14 C -0.23 -5.72 6.38 22.59 0.14 -5.58 14 15 Cl -0.03 -0.50 28.63 -2.72 -0.08 -0.58 14 16 C 0.42 11.56 7.83 84.85 0.66 12.22 14 17 O -0.47 -10.21 13.12 -88.40 -1.16 -11.37 14 18 N -0.61 -20.89 10.48 -310.77 -3.26 -24.14 14 19 H 0.27 15.12 8.31 -92.71 -0.77 14.35 14 20 H 0.03 1.21 7.58 -2.39 -0.02 1.19 14 21 H 0.03 1.21 7.19 -2.39 -0.02 1.19 14 22 H 0.41 17.00 8.44 -92.71 -0.78 16.22 14 23 H 0.21 3.66 8.06 -2.91 -0.02 3.64 14 24 H 0.43 4.78 9.06 -74.06 -0.67 4.11 14 Total: -1.00 -65.61 239.66 -1.42 -67.03 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -0.24 Total: 12.08 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 5.05 Total: 21.00 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -6.88 Total: -132.08 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -1.16 Total: -11.37 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.88 Total: 43.93 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -65.61 -1.42 -67.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306171506.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.440 kcal (2) G-P(sol) polarization free energy of solvation -65.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds