Wall clock time and date at job start Mon Mar 30 2020 03:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39296 * 123.23684 * 280.48852 * 3 2 1 5 5 Cl 1.73601 * 121.50624 * 0.02562 * 4 3 2 6 6 N 1.29604 * 116.99529 * 180.02562 * 4 3 2 7 7 S 1.69444 * 108.08141 * 359.97438 * 6 4 3 8 8 C 1.39219 * 123.23755 * 100.51569 * 3 2 1 9 9 N 1.37794 * 127.35624 * 0.02562 * 8 3 2 10 10 C 1.36791 * 119.99949 * 179.97438 * 9 8 3 11 11 H 1.07997 * 119.99898 * 359.97438 * 10 9 8 12 12 C 1.38806 * 120.00247 * 179.97438 * 10 9 8 13 13 N 1.31563 * 119.99816 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00207 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46870 * 90.00323 * 14 12 10 16 16 H 1.48499 * 109.47021 * 210.00345 * 14 12 10 17 17 H 1.48502 * 109.46867 * 330.00256 * 14 12 10 18 18 H 0.97001 * 120.00010 * 0.02562 * 9 8 3 19 19 H 0.96993 * 120.00112 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3316 -0.2111 1.1456 5 17 2.5910 -0.4979 2.6893 6 7 4.6199 -0.1844 1.0072 7 16 4.9675 0.1175 -0.6236 8 6 3.3310 0.2135 -1.1449 9 7 2.8730 0.4510 -2.4226 10 6 3.7631 0.6414 -3.4438 11 1 4.8246 0.6060 -3.2485 12 6 3.3018 0.8801 -4.7310 13 7 2.0086 0.9237 -4.9689 14 14 4.5172 1.1394 -6.1257 15 1 4.8397 -0.1685 -6.7507 16 1 3.9183 2.0400 -7.1432 17 1 5.7598 1.7527 -5.5917 18 1 1.9195 0.4838 -2.5978 19 1 1.6862 1.0908 -5.8683 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306219367.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:47 Heat of formation + Delta-G solvation = 28.369687 kcal Electronic energy + Delta-G solvation = -10929.985676 eV Core-core repulsion = 8598.924507 eV Total energy + Delta-G solvation = -2331.061169 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 228.977 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.92068 -38.17726 -37.23879 -36.81412 -34.42112 -30.93655 -27.43050 -25.05100 -22.70669 -20.64203 -20.02370 -17.91740 -17.17511 -16.37665 -16.02183 -15.91421 -15.25079 -14.01746 -13.95744 -13.86272 -13.82372 -13.67591 -13.01609 -12.81473 -12.53776 -12.16657 -12.09889 -11.72957 -11.30293 -11.10768 -9.39799 -9.21062 -9.01934 -6.24653 0.11523 0.23728 0.62637 0.89996 1.41583 1.52621 1.59328 1.69526 2.00143 2.16525 2.54230 2.79731 2.92661 3.51706 4.40658 4.61366 4.90147 5.20660 5.61791 6.16140 6.62821 6.74546 6.81987 8.09901 Molecular weight = 228.98amu Principal moments of inertia in cm(-1) A = 0.042651 B = 0.008214 C = 0.006904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.336347 B = 3408.091969 C = 4054.586543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.313 3.687 3 C -0.328 4.328 4 C 0.270 3.730 5 Cl -0.018 7.018 6 N -0.552 5.552 7 S 0.276 5.724 8 C 0.076 3.924 9 N -0.432 5.432 10 C -0.319 4.319 11 H 0.139 0.861 12 C 0.005 3.995 13 N -0.870 5.870 14 Si 1.015 2.985 15 H -0.260 1.260 16 H -0.273 1.273 17 H -0.243 1.243 18 H 0.406 0.594 19 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.332 -0.059 0.413 6.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C 0.001 3.999 3 C -0.356 4.356 4 C 0.068 3.932 5 Cl 0.009 6.991 6 N -0.376 5.376 7 S 0.411 5.589 8 C -0.181 4.181 9 N -0.026 5.026 10 C -0.453 4.453 11 H 0.156 0.844 12 C -0.205 4.205 13 N -0.500 5.500 14 Si 0.834 3.166 15 H -0.185 1.185 16 H -0.198 1.198 17 H -0.165 1.165 18 H 0.242 0.758 19 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.545 -0.039 0.335 6.554 hybrid contribution -2.069 0.054 -0.365 2.102 sum 4.476 0.015 -0.030 4.476 Atomic orbital electron populations 1.81097 1.12343 1.16779 1.08434 1.24779 0.91512 0.90896 0.92711 1.14638 0.85662 1.42706 0.92561 1.21016 0.89350 0.95904 0.86943 1.98357 1.80398 1.94110 1.26193 1.75857 1.13982 1.35906 1.11856 1.83365 1.00544 1.76530 0.98415 1.22544 1.01485 1.06260 0.87801 1.40602 1.10388 1.49098 1.02529 1.20785 0.92036 1.45851 0.86641 0.84395 1.26765 0.98969 0.93129 1.01666 1.69742 1.15240 1.39032 1.26029 0.84571 0.77504 0.79399 0.75175 1.18480 1.19816 1.16535 0.75806 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.85 18.54 19.00 0.35 -22.49 13 2 C 0.31 13.59 14.54 88.33 1.28 14.88 13 3 C -0.33 -13.63 5.76 -21.54 -0.12 -13.75 13 4 C 0.27 10.57 7.27 85.28 0.62 11.19 13 5 Cl -0.02 -0.62 28.56 -2.72 -0.08 -0.70 13 6 N -0.55 -21.42 12.00 -52.89 -0.63 -22.06 13 7 S 0.28 10.00 22.42 -56.49 -1.27 8.74 13 8 C 0.08 3.12 7.24 83.99 0.61 3.73 13 9 N -0.43 -18.49 5.39 -187.63 -1.01 -19.50 13 10 C -0.32 -13.04 9.73 84.06 0.82 -12.23 13 11 H 0.14 5.11 6.88 -2.91 -0.02 5.09 13 12 C 0.01 0.21 5.50 84.87 0.47 0.68 13 13 N -0.87 -38.24 13.05 21.65 0.28 -37.96 13 14 Si 1.01 30.56 29.55 68.60 2.03 32.59 13 15 H -0.26 -7.68 7.11 99.48 0.71 -6.97 13 16 H -0.27 -8.25 7.11 99.48 0.71 -7.54 13 17 H -0.24 -6.78 7.11 99.48 0.71 -6.07 13 18 H 0.41 18.51 7.60 -92.71 -0.70 17.80 13 19 H 0.30 12.16 8.31 -92.71 -0.77 11.38 13 Total: -1.00 -47.16 223.66 3.97 -43.20 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.63 Total: 13.69 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 3.67 Total: 4.49 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -1.01 Total: -102.00 kcal Atomic # 14 Polarization: 30.56 SS G_CDS: 2.03 Total: 32.59 kcal Atomic # 16 Polarization: 10.00 SS G_CDS: -1.27 Total: 8.74 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -47.16 3.97 -43.20 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306219367.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.565 kcal (2) G-P(sol) polarization free energy of solvation -47.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds