Wall clock time and date at job start Mon Mar 30 2020 03:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.38458 * 120.02059 * 90.00204 * 11 10 9 13 13 F 1.35097 * 120.01839 * 359.97438 * 12 11 10 14 14 C 1.38445 * 119.96250 * 179.97438 * 12 11 10 15 15 C 1.38234 * 120.00042 * 359.97438 * 14 12 11 16 16 C 1.38203 * 120.03739 * 359.97438 * 15 14 12 17 17 C 1.38299 * 120.01795 * 269.71527 * 11 10 9 18 18 Cl 1.73603 * 119.99952 * 0.02562 * 17 11 10 19 19 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 20 20 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 21 21 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 22 22 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 23 23 H 1.07998 * 120.00180 * 179.97438 * 14 12 11 24 24 H 1.08000 * 119.97977 * 180.02562 * 15 14 12 25 25 H 1.08000 * 119.98164 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.2793 -2.0725 1.1852 13 9 5.6203 -2.1990 2.3577 14 6 7.6405 -1.8200 1.1794 15 6 8.3145 -1.6912 -0.0206 16 6 7.6303 -1.8149 -1.2150 17 6 6.2704 -2.0711 -1.2111 18 17 5.4131 -2.2316 -2.7121 19 1 -0.4851 0.8401 0.0004 20 1 3.8646 -0.3620 0.0004 21 1 3.8521 -3.0451 0.8825 22 1 3.8454 -3.0397 -0.8974 23 1 8.1758 -1.7237 2.1124 24 1 9.3764 -1.4946 -0.0247 25 1 8.1577 -1.7137 -2.1520 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306317279.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:36 Heat of formation + Delta-G solvation = -33.648255 kcal Electronic energy + Delta-G solvation = -13477.502677 eV Core-core repulsion = 10816.912470 eV Total energy + Delta-G solvation = -2660.590207 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.97671 -40.28933 -37.42295 -36.85567 -34.01079 -31.95208 -31.40922 -27.61900 -24.47581 -23.81995 -22.54545 -19.96996 -18.68521 -17.80538 -16.97285 -16.84130 -16.46516 -15.81962 -15.59126 -14.97067 -14.75419 -14.33201 -14.10360 -13.92528 -13.46295 -12.97368 -12.71776 -12.37726 -12.31334 -12.19459 -11.87382 -11.74613 -11.05552 -9.93158 -9.72798 -9.37607 -8.06400 -5.40774 -0.04145 0.00913 1.07714 1.32948 1.36342 1.43219 2.39808 2.44216 3.22358 3.24799 3.55677 3.75745 3.80537 3.91057 4.23241 4.46109 4.64992 4.76798 4.91414 5.10289 5.16940 5.20337 5.68811 5.72885 6.15994 7.00357 7.73557 7.95061 9.15038 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.026824 B = 0.009825 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.590064 B = 2849.055913 C = 3251.983324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.056 4.056 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.234 4.234 8 H 0.059 0.941 9 N -0.745 5.745 10 C 0.192 3.808 11 C -0.144 4.144 12 C 0.099 3.901 13 F -0.144 7.144 14 C -0.145 4.145 15 C -0.062 4.062 16 C -0.118 4.118 17 C -0.012 4.012 18 Cl -0.061 7.061 19 H 0.260 0.740 20 H 0.364 0.636 21 H 0.028 0.972 22 H 0.047 0.953 23 H 0.169 0.831 24 H 0.190 0.810 25 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.370 -3.140 -1.544 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.248 4.248 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.185 1.185 7 C -0.365 4.365 8 H 0.077 0.923 9 N -0.390 5.390 10 C 0.066 3.934 11 C -0.146 4.146 12 C 0.079 3.921 13 F -0.123 7.123 14 C -0.164 4.164 15 C -0.080 4.080 16 C -0.136 4.136 17 C -0.039 4.039 18 Cl -0.032 7.032 19 H 0.069 0.931 20 H 0.197 0.803 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.187 0.813 24 H 0.207 0.793 25 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 22.039 -3.278 -1.632 22.341 hybrid contribution -0.751 0.791 0.161 1.103 sum 21.287 -2.487 -1.471 21.482 Atomic orbital electron populations 1.69865 1.06945 1.26767 1.59458 1.25403 0.96051 1.00936 1.02368 0.85487 0.78483 0.80041 0.78317 1.20003 1.21600 1.18501 1.18991 0.82119 0.93699 1.41666 0.92332 1.42531 1.02483 1.03044 1.90962 1.19543 0.85686 0.88623 0.99569 1.19980 0.96768 1.05564 0.92330 1.17799 0.91669 1.02697 0.79949 1.91494 1.81821 1.93322 1.45651 1.21631 0.90729 1.01665 1.02363 1.21484 1.02162 0.95186 0.89137 1.21528 0.90524 0.99889 1.01677 1.20855 0.93690 1.03244 0.86144 1.98392 1.77941 1.95912 1.30948 0.93144 0.80307 0.95372 0.93544 0.81319 0.79307 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.33 13.97 21.65 0.30 -64.03 15 2 C -0.06 -3.41 5.50 84.86 0.47 -2.94 15 3 Si 0.95 47.31 27.74 68.60 1.90 49.22 15 4 H -0.27 -13.21 7.11 99.48 0.71 -12.51 15 5 H -0.29 -14.35 7.11 99.48 0.71 -13.64 15 6 H -0.26 -12.05 6.52 99.48 0.65 -11.40 15 7 C -0.23 -14.03 10.47 84.03 0.88 -13.15 15 8 H 0.06 3.81 8.06 -2.91 -0.02 3.79 15 9 N -0.74 -37.56 5.40 -347.18 -1.87 -39.43 15 10 C 0.19 8.16 5.82 85.63 0.50 8.66 15 11 C -0.14 -4.89 5.26 -19.80 -0.10 -5.00 15 12 C 0.10 2.99 7.24 22.37 0.16 3.15 15 13 F -0.14 -5.05 16.48 44.97 0.74 -4.31 15 14 C -0.15 -2.89 10.03 22.32 0.22 -2.66 15 15 C -0.06 -0.91 10.04 22.26 0.22 -0.69 15 16 C -0.12 -2.24 9.83 22.30 0.22 -2.03 15 17 C -0.01 -0.34 6.31 22.32 0.14 -0.20 15 18 Cl -0.06 -1.87 27.29 -2.72 -0.07 -1.94 15 19 H 0.26 16.15 8.31 -92.70 -0.77 15.38 15 20 H 0.36 17.84 5.52 -92.71 -0.51 17.33 15 21 H 0.03 1.26 7.64 -2.38 -0.02 1.24 15 22 H 0.05 1.99 6.89 -2.39 -0.02 1.97 15 23 H 0.17 2.32 8.06 -2.91 -0.02 2.30 15 24 H 0.19 1.01 8.06 -2.91 -0.02 0.99 15 25 H 0.17 2.18 8.06 -2.91 -0.02 2.16 15 Total: -1.00 -72.10 242.70 4.36 -67.74 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.65 Total: 7.61 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 2.71 Total: -14.86 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -1.57 Total: -103.47 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.74 Total: -4.31 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.90 Total: 49.22 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.07 Total: -1.94 kcal Total: -72.10 4.36 -67.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306317279.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.095 kcal (2) G-P(sol) polarization free energy of solvation -72.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds