Wall clock time and date at job start Mon Mar 30 2020 03:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38079 * 119.95531 * 2 1 4 4 C 1.39017 * 119.94346 * 180.02562 * 3 2 1 5 5 N 1.39405 * 120.06730 * 179.97438 * 4 3 2 6 6 C 1.36832 * 119.99574 * 359.72180 * 5 4 3 7 7 H 1.07990 * 120.00396 * 0.02562 * 6 5 4 8 8 C 1.38775 * 119.99513 * 180.02562 * 6 5 4 9 9 N 1.31612 * 119.99906 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00138 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00008 * 10 8 6 12 12 H 1.48501 * 109.47275 * 210.00257 * 10 8 6 13 13 H 1.48506 * 109.47294 * 330.00160 * 10 8 6 14 14 C 1.39199 * 119.86516 * 0.25334 * 4 3 2 15 15 Cl 1.73595 * 120.04746 * 179.75097 * 14 4 3 16 16 C 1.38119 * 119.90955 * 359.51119 * 14 4 3 17 17 C 1.38509 * 119.95128 * 180.02562 * 2 1 3 18 18 F 1.35094 * 119.93516 * 359.97438 * 17 2 1 19 19 H 1.09005 * 109.46975 * 90.00150 * 1 2 3 20 20 H 1.09001 * 109.47430 * 209.99968 * 1 2 3 21 21 H 1.09000 * 109.46996 * 330.00047 * 1 2 3 22 22 H 1.08001 * 120.02585 * 0.04010 * 3 2 1 23 23 H 0.96996 * 120.00259 * 179.97438 * 5 4 3 24 24 H 0.97000 * 119.99667 * 179.97438 * 9 8 6 25 25 H 1.08003 * 119.97574 * 180.25501 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1965 1.1963 0.0000 4 6 3.5867 1.1961 -0.0005 5 7 4.2854 2.4024 -0.0011 6 6 3.6028 3.5883 -0.0068 7 1 2.5229 3.5897 -0.0105 8 6 4.2983 4.7891 -0.0079 9 7 3.6419 5.9298 -0.0140 10 14 6.1663 4.7866 -0.0008 11 1 6.6667 4.7815 -1.3990 12 1 6.6604 6.0005 0.6974 13 1 6.6571 3.5755 0.7049 14 6 4.2796 -0.0112 -0.0064 15 17 6.0155 -0.0171 -0.0136 16 6 3.5841 -1.2045 -0.0015 17 6 2.1986 -1.2001 -0.0005 18 9 1.5208 -2.3687 -0.0005 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.6562 2.1315 0.0007 23 1 5.2554 2.4011 -0.0011 24 1 4.1281 6.7691 -0.0143 25 1 4.1207 -2.1418 -0.0019 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306719420.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:58 Heat of formation + Delta-G solvation = -33.938977 kcal Electronic energy + Delta-G solvation = -13397.999180 eV Core-core repulsion = 10737.396366 eV Total energy + Delta-G solvation = -2660.602814 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.99479 -38.75673 -35.84938 -35.36748 -32.44751 -31.66861 -28.39265 -26.40874 -24.42920 -21.83217 -20.58486 -18.48266 -16.96052 -16.27718 -15.72576 -14.90984 -14.64077 -13.84922 -13.61247 -13.30763 -13.11654 -12.67418 -12.55606 -12.41578 -12.00482 -11.62310 -11.44550 -10.97122 -10.84473 -10.55602 -10.34485 -10.04216 -9.99795 -8.94081 -8.09871 -6.97952 -6.67761 -3.94962 1.84344 2.07063 2.81339 2.95196 2.96822 3.01588 3.86535 4.18445 4.58306 4.94143 5.20829 5.35249 5.42636 5.79560 5.98501 6.05747 6.19844 6.40920 6.58049 6.67471 6.90725 7.04789 7.31222 7.52657 7.74932 8.33975 8.99947 9.02940 10.42098 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.029780 B = 0.009638 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.007380 B = 2904.619415 C = 3829.465261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.053 4.053 3 C -0.178 4.178 4 C 0.211 3.789 5 N -0.568 5.568 6 C -0.308 4.308 7 H 0.123 0.877 8 C 0.046 3.954 9 N -0.864 5.864 10 Si 0.875 3.125 11 H -0.265 1.265 12 H -0.270 1.270 13 H -0.263 1.263 14 C -0.144 4.144 15 Cl -0.098 7.098 16 C -0.072 4.072 17 C -0.032 4.032 18 F -0.158 7.158 19 H 0.068 0.932 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.138 0.862 23 H 0.384 0.616 24 H 0.280 0.720 25 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.131 -8.308 -0.003 8.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.055 4.055 3 C -0.202 4.202 4 C 0.088 3.912 5 N -0.171 5.171 6 C -0.436 4.436 7 H 0.141 0.859 8 C -0.160 4.160 9 N -0.498 5.498 10 Si 0.700 3.300 11 H -0.190 1.190 12 H -0.195 1.195 13 H -0.188 1.188 14 C -0.177 4.177 15 Cl -0.069 7.069 16 C -0.092 4.092 17 C -0.055 4.055 18 F -0.137 7.137 19 H 0.087 0.913 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.156 0.844 23 H 0.221 0.779 24 H 0.090 0.910 25 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.248 -7.702 -0.001 7.706 hybrid contribution 1.489 0.015 0.009 1.489 sum 1.736 -7.687 0.008 7.881 Atomic orbital electron populations 1.20678 0.91288 1.02538 1.02168 1.19547 0.95804 0.91565 0.98620 1.20214 0.91192 0.97376 1.11451 1.17327 0.91392 0.84444 0.98026 1.41422 1.07299 1.03233 1.65185 1.19507 0.94863 0.81253 1.48001 0.85941 1.25027 0.99267 0.94884 0.96870 1.69685 1.36489 0.97575 1.46075 0.86674 0.84500 0.79145 0.79686 1.18969 1.19520 1.18797 1.19579 0.82236 0.93174 1.22712 1.98271 1.12176 1.98647 1.97837 1.20285 0.92163 0.96653 1.00125 1.16597 0.88809 0.80600 1.19535 1.91336 1.80153 1.46568 1.95638 0.91311 0.91783 0.91307 0.84437 0.77930 0.90957 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.83 36.01 0.35 -1.27 15 2 C -0.05 -0.97 5.88 -104.58 -0.62 -1.58 15 3 C -0.18 -3.60 8.95 -39.35 -0.35 -3.96 15 4 C 0.21 4.51 6.62 -83.77 -0.55 3.96 15 5 N -0.57 -13.03 5.20 -9.57 -0.05 -13.08 15 6 C -0.31 -7.73 10.04 -15.12 -0.15 -7.88 15 7 H 0.12 3.19 5.91 -52.49 -0.31 2.88 15 8 C 0.05 1.16 5.50 -17.45 -0.10 1.07 15 9 N -0.86 -23.06 13.97 55.49 0.78 -22.28 15 10 Si 0.87 18.92 27.73 -169.99 -4.71 14.20 15 11 H -0.26 -5.65 7.11 56.52 0.40 -5.25 15 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 13 H -0.26 -5.50 6.52 56.52 0.37 -5.13 15 14 C -0.14 -2.82 6.34 -39.27 -0.25 -3.07 15 15 Cl -0.10 -1.76 27.60 -51.86 -1.43 -3.19 15 16 C -0.07 -1.31 9.80 -39.51 -0.39 -1.70 15 17 C -0.03 -0.59 7.24 -39.37 -0.29 -0.88 15 18 F -0.16 -2.82 16.46 2.25 0.04 -2.78 15 19 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 20 H 0.06 0.89 7.63 -51.93 -0.40 0.49 15 21 H 0.07 0.94 8.08 -51.93 -0.42 0.52 15 22 H 0.14 2.81 5.96 -52.49 -0.31 2.50 15 23 H 0.38 8.54 4.42 -40.82 -0.18 8.36 15 24 H 0.28 6.95 8.31 -40.82 -0.34 6.61 15 25 H 0.13 2.00 8.06 -52.48 -0.42 1.58 15 LS Contribution 238.42 15.07 3.59 3.59 Total: -1.00 -25.38 238.42 -5.76 -31.14 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -1.63 Total: 7.72 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -2.34 Total: -15.32 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.73 Total: -35.36 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.20 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -1.43 Total: -3.19 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -25.38 -5.76 -31.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306719420.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.803 kcal (2) G-P(sol) polarization free energy of solvation -25.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds