Wall clock time and date at job start Mon Mar 30 2020 03:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48496 * 109.47074 * 240.00449 * 3 2 1 5 5 H 1.48502 * 109.46754 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46985 * 119.99907 * 3 2 1 7 7 C 1.37875 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00016 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00025 * 359.97438 * 7 2 1 10 10 O 1.42112 * 106.39903 * 66.46717 * 9 7 2 11 11 O 1.42100 * 106.40899 * 293.54767 * 9 7 2 12 12 O 1.52202 * 107.22014 * 180.02562 * 9 7 2 13 13 C 1.35910 * 113.99999 * 74.99952 * 12 9 7 14 14 C 1.39138 * 120.47706 * 270.24716 * 13 12 9 15 15 C 1.38535 * 118.37336 * 180.24194 * 14 13 12 16 16 C 1.38262 * 119.22035 * 359.47237 * 15 14 13 17 17 N 1.31844 * 120.88422 * 0.30388 * 16 15 14 18 18 C 1.31834 * 121.78446 * 359.97438 * 17 16 15 19 19 H 0.96998 * 119.99793 * 359.97438 * 1 2 3 20 20 H 1.07999 * 120.81005 * 0.02562 * 14 13 12 21 21 H 1.08002 * 120.39207 * 179.75678 * 15 14 13 22 22 H 1.08000 * 119.55595 * 180.28266 * 16 15 14 23 23 H 1.07997 * 119.66066 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1236 -2.7199 -0.0005 10 8 0.4511 -2.7950 -1.2502 11 8 0.4517 -2.7956 1.2493 12 8 2.1573 -3.8371 -0.0005 13 6 2.7686 -4.0246 1.1988 14 6 3.9333 -3.3314 1.5131 15 6 4.5229 -3.5597 2.7458 16 6 3.9335 -4.4533 3.6208 17 7 2.8266 -5.0906 3.2937 18 6 2.2373 -4.9059 2.1289 19 1 -0.4850 0.8400 0.0004 20 1 4.3690 -2.6351 0.8119 21 1 5.4298 -3.0423 3.0220 22 1 4.3860 -4.6319 4.5850 23 1 1.3317 -5.4464 1.8964 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306880530.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:01 Heat of formation + Delta-G solvation = -114.612341 kcal Electronic energy + Delta-G solvation = -14064.499874 eV Core-core repulsion = 11390.069717 eV Total energy + Delta-G solvation = -2674.430156 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.024 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.12001 -39.80003 -37.64223 -36.42650 -35.27285 -33.40022 -31.60103 -28.44691 -25.00120 -24.84237 -21.92008 -20.63549 -18.86797 -18.52278 -18.08463 -17.85829 -17.11161 -16.11517 -15.72209 -15.11758 -14.85034 -14.58239 -14.10895 -13.98471 -13.48675 -13.22419 -13.02098 -13.00930 -12.71377 -12.64067 -12.33597 -11.26739 -11.09832 -10.88183 -10.63612 -10.09249 -8.82924 -7.60355 -0.48464 0.10240 0.40830 1.33985 1.37124 1.50570 2.05259 2.28107 2.54642 2.66835 3.36787 3.46222 3.60460 3.81779 3.91601 4.02184 4.32771 4.59171 4.93092 4.96572 5.08195 5.22190 5.63341 5.78888 6.69073 6.77697 8.15434 Molecular weight = 229.02amu Principal moments of inertia in cm(-1) A = 0.032398 B = 0.011820 C = 0.009710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.048183 B = 2368.224524 C = 2883.074544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.074 3.926 3 Si 0.996 3.004 4 H -0.249 1.249 5 H -0.266 1.266 6 H -0.242 1.242 7 C -1.052 5.052 8 H 0.131 0.869 9 S 2.691 3.309 10 O -1.021 7.021 11 O -1.022 7.022 12 O -0.682 6.682 13 C 0.004 3.996 14 C -0.086 4.086 15 C -0.140 4.140 16 C 0.104 3.896 17 N -0.483 5.483 18 C 0.100 3.900 19 H 0.302 0.698 20 H 0.164 0.836 21 H 0.197 0.803 22 H 0.212 0.788 23 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.019 -2.476 6.409 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.813 3.187 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.165 1.165 7 C -1.185 5.185 8 H 0.149 0.851 9 S 2.796 3.204 10 O -1.019 7.019 11 O -1.021 7.021 12 O -0.640 6.640 13 C -0.040 4.040 14 C -0.114 4.114 15 C -0.159 4.159 16 C -0.053 4.053 17 N -0.194 5.194 18 C -0.058 4.058 19 H 0.112 0.888 20 H 0.182 0.818 21 H 0.214 0.786 22 H 0.229 0.771 23 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.895 -3.611 6.762 13.321 hybrid contribution 0.173 1.663 -1.205 2.061 sum 11.067 -1.949 5.557 12.536 Atomic orbital electron populations 1.69981 1.08959 1.32790 1.40331 1.26057 0.95386 1.05430 0.87132 0.85077 0.78757 0.73781 0.81080 1.17307 1.18983 1.16522 1.30933 1.07534 1.12003 1.67981 0.85067 1.00809 0.73066 0.74284 0.72236 1.93344 1.73894 1.87686 1.47025 1.93368 1.75056 1.87164 1.46482 1.85705 1.66962 1.70423 1.40910 1.19606 0.97335 1.03838 0.83241 1.22321 0.92652 0.96898 0.99523 1.22637 1.02771 0.98917 0.91576 1.23824 0.89844 0.90495 1.01185 1.67828 1.10896 1.24995 1.15688 1.23023 0.99129 0.95027 0.88660 0.88779 0.81805 0.78593 0.77098 0.82312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.05 13.19 21.45 0.28 -51.77 14 2 C 0.07 3.96 5.46 84.65 0.46 4.43 14 3 Si 1.00 39.11 29.54 68.60 2.03 41.13 14 4 H -0.25 -9.20 7.11 99.48 0.71 -8.49 14 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 14 6 H -0.24 -8.63 7.11 99.48 0.71 -7.92 14 7 C -1.05 -56.42 9.14 67.73 0.62 -55.80 14 8 H 0.13 6.04 6.57 -2.91 -0.02 6.02 14 9 S 2.69 150.50 4.71 -56.49 -0.27 150.24 14 10 O -1.02 -64.33 18.01 -118.78 -2.14 -66.47 14 11 O -1.02 -60.51 16.35 -118.78 -1.94 -62.45 14 12 O -0.68 -32.16 10.18 -61.81 -0.63 -32.79 14 13 C 0.00 0.15 4.82 22.60 0.11 0.26 14 14 C -0.09 -2.73 9.43 22.56 0.21 -2.52 14 15 C -0.14 -3.10 10.11 22.35 0.23 -2.87 14 16 C 0.10 2.40 11.18 84.70 0.95 3.35 14 17 N -0.48 -15.54 10.35 -195.44 -2.02 -17.56 14 18 C 0.10 3.80 10.37 84.81 0.88 4.68 14 19 H 0.30 15.80 8.31 -92.71 -0.77 15.03 14 20 H 0.16 4.62 7.02 -2.91 -0.02 4.60 14 21 H 0.20 2.27 8.06 -2.91 -0.02 2.25 14 22 H 0.21 2.65 8.06 -2.91 -0.02 2.62 14 23 H 0.16 5.87 8.06 -2.91 -0.02 5.84 14 Total: -1.00 -77.41 230.22 0.00 -77.41 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.24 Total: 10.74 kcal Atomic # 6 Polarization: -51.93 SS G_CDS: 3.45 Total: -48.48 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -1.74 Total: -69.33 kcal Atomic # 8 Polarization: -157.00 SS G_CDS: -4.71 Total: -161.71 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.13 kcal Atomic # 16 Polarization: 150.50 SS G_CDS: -0.27 Total: 150.24 kcal Total: -77.41 0.00 -77.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306880530.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.205 kcal (2) G-P(sol) polarization free energy of solvation -77.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds