Wall clock time and date at job start Mon Mar 30 2020 03:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29482 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48497 * 109.47553 * 240.00679 * 3 2 1 5 5 H 1.48502 * 109.47106 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47299 * 120.00098 * 3 2 1 7 7 C 1.46605 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99879 * 161.43003 * 7 2 1 9 9 C 1.40000 * 119.99612 * 341.70841 * 7 2 1 10 10 C 1.41748 * 120.31700 * 323.74591 * 9 7 2 11 11 F 1.35099 * 120.24253 * 0.02562 * 10 9 7 12 12 C 1.38009 * 119.50941 * 179.97438 * 10 9 7 13 13 C 1.38464 * 120.15605 * 359.97438 * 12 10 9 14 14 C 1.39227 * 120.64706 * 0.02562 * 13 12 10 15 15 F 1.35095 * 119.75403 * 180.02562 * 14 13 12 16 16 C 1.36458 * 120.49330 * 359.73515 * 14 13 12 17 17 N 1.48020 * 120.08977 * 180.25465 * 16 14 13 18 18 O 1.31699 * 119.99896 * 270.24555 * 17 16 14 19 19 O 1.31691 * 119.99757 * 90.24293 * 17 16 14 20 20 H 0.96997 * 119.99898 * 359.97438 * 1 2 3 21 21 H 1.07994 * 119.92449 * 180.02562 * 12 10 9 22 22 H 1.07994 * 119.67760 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2288 1.6177 0.0000 4 1 3.0825 1.6965 -1.2125 5 1 1.2638 2.7464 0.0006 6 1 3.0826 1.6964 1.2124 7 6 2.0279 -1.2696 -0.0006 8 1 3.0656 -1.2938 -0.2984 9 6 1.3809 -2.4516 0.3794 10 6 0.4139 -2.4366 1.4158 11 9 0.1087 -1.2806 2.0450 12 6 -0.2141 -3.6113 1.7766 13 6 0.0991 -4.7947 1.1295 14 6 1.0478 -4.8169 0.1107 15 9 1.3390 -5.9815 -0.5090 16 6 1.6813 -3.6700 -0.2707 17 7 2.6843 -3.7029 -1.3587 18 8 3.9523 -3.9225 -1.0789 19 8 2.3086 -3.5125 -2.6065 20 1 -0.4850 0.8400 0.0004 21 1 -0.9521 -3.6075 2.5650 22 1 -0.3974 -5.7094 1.4178 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306921790.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:40 Heat of formation + Delta-G solvation = -51.978584 kcal Electronic energy + Delta-G solvation = -15715.559435 eV Core-core repulsion = 12490.004896 eV Total energy + Delta-G solvation = -3225.554539 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.034 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.49730 -47.57818 -38.52588 -36.90249 -34.25889 -33.42207 -31.16981 -29.64063 -26.38734 -25.01285 -21.86487 -21.30100 -18.54249 -17.66813 -17.31619 -16.66983 -16.26701 -15.48360 -15.18863 -15.10072 -14.30093 -14.22887 -13.62368 -13.39841 -12.48729 -12.26127 -11.95430 -11.64520 -11.54678 -11.12982 -10.80635 -10.59349 -10.52573 -9.99281 -9.80687 -9.72824 -8.60996 -7.87328 -7.57707 -5.24714 0.75840 1.68804 2.00921 2.22801 2.74643 2.77527 2.79557 3.47255 3.79934 4.43041 4.79276 5.29431 5.49891 5.73260 5.96217 6.22646 6.27775 6.61545 6.73695 6.87129 7.02056 7.26065 7.62482 7.63447 7.71880 7.96834 9.32553 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.026947 B = 0.012807 C = 0.009434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.835029 B = 2185.715425 C = 2967.420536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.073 3.927 3 Si 0.933 3.067 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.428 4.428 8 H 0.101 0.899 9 C 0.122 3.878 10 C 0.041 3.959 11 F -0.129 7.129 12 C -0.083 4.083 13 C -0.256 4.256 14 C 0.174 3.826 15 F -0.147 7.147 16 C -0.151 4.151 17 N 0.010 4.990 18 O -0.180 6.180 19 O -0.159 6.159 20 H 0.305 0.695 21 H 0.127 0.873 22 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.533 0.565 3.167 3.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.159 4.159 3 Si 0.754 3.246 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.451 4.451 8 H 0.119 0.881 9 C 0.117 3.883 10 C 0.020 3.980 11 F -0.107 7.107 12 C -0.103 4.103 13 C -0.276 4.276 14 C 0.154 3.846 15 F -0.126 7.126 16 C -0.235 4.235 17 N 0.505 4.495 18 O -0.381 6.381 19 O -0.367 6.367 20 H 0.118 0.882 21 H 0.145 0.855 22 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.273 0.717 3.726 4.423 hybrid contribution 0.482 0.600 -0.378 0.857 sum -1.791 1.317 3.348 4.019 Atomic orbital electron populations 1.68993 1.09144 1.32808 1.22096 1.27506 0.94759 1.02421 0.91254 0.85905 0.80276 0.77144 0.81262 1.17737 1.19217 1.17574 1.20897 0.98568 0.90004 1.35679 0.88108 1.16649 0.91522 0.89878 0.90280 1.17487 1.02919 0.81503 0.96048 1.91384 1.91852 1.47496 1.79970 1.20579 0.98801 0.91035 0.99866 1.19984 1.05744 0.99175 1.02732 1.16643 0.96224 0.78196 0.93562 1.91453 1.92507 1.46976 1.81680 1.19357 1.06957 0.97025 1.00144 1.50009 1.02738 0.93465 1.03251 1.96170 0.98008 1.53264 1.90707 1.96177 1.86311 1.52552 1.01617 0.88162 0.85496 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -16.40 11.10 55.99 0.62 -15.78 14 2 C 0.07 1.67 4.73 -15.17 -0.07 1.60 14 3 Si 0.93 16.93 29.68 -169.99 -5.04 11.88 14 4 H -0.25 -4.62 7.11 56.52 0.40 -4.22 14 5 H -0.27 -4.55 7.11 56.52 0.40 -4.15 14 6 H -0.25 -4.53 7.11 56.52 0.40 -4.13 14 7 C -0.43 -10.75 8.72 -35.55 -0.31 -11.06 14 8 H 0.10 2.55 7.90 -52.49 -0.41 2.13 14 9 C 0.12 3.07 5.46 -106.72 -0.58 2.49 14 10 C 0.04 0.96 6.75 -38.33 -0.26 0.70 14 11 F -0.13 -2.99 14.21 2.25 0.03 -2.96 14 12 C -0.08 -1.66 10.01 -39.58 -0.40 -2.06 14 13 C -0.26 -5.08 10.03 -39.13 -0.39 -5.47 14 14 C 0.17 3.98 7.24 -39.86 -0.29 3.69 14 15 F -0.15 -3.29 17.05 2.25 0.04 -3.25 14 16 C -0.15 -3.79 6.27 -79.41 -0.50 -4.29 14 17 N 0.01 0.26 4.02 34.22 0.14 0.39 14 18 O -0.18 -4.56 19.97 -31.57 -0.63 -5.19 14 19 O -0.16 -4.12 19.97 -31.56 -0.63 -4.75 14 20 H 0.31 6.16 8.27 -40.82 -0.34 5.83 14 21 H 0.13 2.09 8.06 -52.49 -0.42 1.66 14 22 H 0.13 2.16 8.06 -52.49 -0.42 1.74 14 LS Contribution 228.79 15.07 3.45 3.45 Total: -1.00 -26.51 228.79 -5.22 -31.73 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: -0.39 Total: -1.13 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -2.80 Total: -14.39 kcal Atomic # 7 Polarization: -16.14 SS G_CDS: 0.76 Total: -15.38 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.26 Total: -9.94 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 0.07 Total: -6.20 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.04 Total: 11.88 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -26.51 -5.22 -31.73 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306921790.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.253 kcal (2) G-P(sol) polarization free energy of solvation -26.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds