Wall clock time and date at job start Mon Mar 30 2020 03:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30550 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48495 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46830 * 299.99926 * 3 2 1 6 6 H 1.48498 * 109.46914 * 59.99472 * 3 2 1 7 7 C 1.40321 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99415 * 180.02562 * 7 2 1 9 9 C 1.46120 * 120.00072 * 0.27583 * 7 2 1 10 10 O 1.21784 * 120.00305 * 353.05610 * 9 7 2 11 11 C 1.47628 * 119.99721 * 173.05476 * 9 7 2 12 12 C 1.40483 * 120.60866 * 94.13893 * 11 9 7 13 13 F 1.35102 * 120.88703 * 0.02651 * 12 11 9 14 14 C 1.38674 * 118.22695 * 180.02562 * 12 11 9 15 15 C 1.38233 * 119.32812 * 0.02562 * 14 12 11 16 16 N 1.32038 * 121.18568 * 0.02562 * 15 14 12 17 17 C 1.31784 * 121.95098 * 359.65552 * 16 15 14 18 18 Cl 1.73603 * 119.73518 * 180.31484 * 17 16 15 19 19 H 0.97002 * 119.99910 * 0.02562 * 1 2 3 20 20 H 1.07996 * 120.33641 * 180.02562 * 14 12 11 21 21 H 1.07994 * 119.40522 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.6995 1.3463 0.0006 5 1 1.8808 2.3963 -1.2125 6 1 1.8807 2.3964 1.2124 7 6 2.0070 -1.2153 0.0005 8 1 3.0870 -1.2152 0.0010 9 6 1.2764 -2.4807 -0.0050 10 8 0.0647 -2.4848 0.1175 11 6 2.0070 -3.7542 -0.1590 12 6 2.4070 -4.4903 0.9687 13 9 2.1326 -4.0513 2.2165 14 6 3.0910 -5.6796 0.7668 15 6 3.3551 -6.0981 -0.5239 16 7 2.9683 -5.3858 -1.5663 17 6 2.3102 -4.2521 -1.4308 18 17 1.8222 -3.3659 -2.8415 19 1 -0.4850 0.8401 -0.0004 20 1 3.4141 -6.2728 1.6094 21 1 3.8881 -7.0238 -0.6826 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306978379.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:50 Heat of formation + Delta-G solvation = -60.853807 kcal Electronic energy + Delta-G solvation = -13336.786361 eV Core-core repulsion = 10539.183339 eV Total energy + Delta-G solvation = -2797.603023 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 229.005 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.57389 -39.60492 -36.56089 -36.05028 -32.78992 -31.66284 -30.85691 -26.80707 -24.00472 -23.07345 -20.18925 -17.76564 -17.09039 -16.83080 -15.60224 -15.37219 -14.69279 -14.57723 -13.90431 -13.71920 -13.59189 -13.02902 -11.95282 -11.65652 -11.40396 -11.20386 -11.04525 -10.65275 -10.54085 -10.44713 -9.59567 -9.11841 -9.04706 -8.50751 -7.74519 -6.43353 -4.96275 1.13764 1.32361 2.27591 2.99902 3.11092 3.16066 3.80423 3.89609 3.97865 4.32354 4.72271 4.99332 5.10922 5.36753 5.53493 5.99138 6.04433 6.20349 6.78538 7.18134 7.89269 7.94540 8.46518 8.73206 10.01864 10.38179 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.029078 B = 0.010989 C = 0.009301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.703829 B = 2547.466426 C = 3009.741354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.083 3.917 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.398 3.602 10 O -0.511 6.511 11 C -0.154 4.154 12 C 0.162 3.838 13 F -0.116 7.116 14 C -0.212 4.212 15 C 0.124 3.876 16 N -0.491 5.491 17 C 0.209 3.791 18 Cl -0.008 7.008 19 H 0.276 0.724 20 H 0.148 0.852 21 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.689 -6.490 -0.494 9.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.542 4.542 8 H 0.092 0.908 9 C 0.289 3.711 10 O -0.397 6.397 11 C -0.160 4.160 12 C 0.134 3.866 13 F -0.094 7.094 14 C -0.233 4.233 15 C -0.033 4.033 16 N -0.203 5.203 17 C 0.046 3.954 18 Cl 0.021 6.979 19 H 0.087 0.913 20 H 0.166 0.834 21 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.039 -6.634 -1.352 9.072 hybrid contribution 0.347 1.089 0.936 1.477 sum 6.386 -5.545 -0.417 8.468 Atomic orbital electron populations 1.69917 1.07410 1.28310 1.31647 1.25921 0.94724 1.00784 0.92558 0.86269 0.80825 0.81044 0.78636 1.18314 1.19673 1.19723 1.21527 0.94316 0.89847 1.48542 0.90757 1.19122 0.88270 0.84470 0.79251 1.90560 1.14720 1.87382 1.47048 1.22718 1.00638 1.01803 0.90804 1.17922 0.96152 0.92703 0.79790 1.91555 1.91254 1.89163 1.37437 1.22100 1.03722 0.97129 1.00360 1.22407 0.96386 0.98293 0.86233 1.66975 1.11919 1.05997 1.35434 1.21531 0.95423 0.90869 0.87621 1.98408 1.88795 1.72187 1.38555 0.91328 0.83384 0.81436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.10 11.85 55.57 0.66 -20.45 14 2 C 0.08 2.20 5.51 -17.31 -0.10 2.10 14 3 Si 0.91 19.30 29.56 -169.99 -5.03 14.27 14 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 14 5 H -0.27 -5.62 7.11 56.52 0.40 -5.21 14 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 14 7 C -0.51 -14.01 9.45 -35.64 -0.34 -14.34 14 8 H 0.07 1.92 7.85 -52.49 -0.41 1.50 14 9 C 0.40 11.11 5.31 -32.59 -0.17 10.94 14 10 O -0.51 -16.15 15.82 5.11 0.08 -16.07 14 11 C -0.15 -3.62 5.57 -104.60 -0.58 -4.20 14 12 C 0.16 3.27 7.38 -38.58 -0.28 2.99 14 13 F -0.12 -2.45 16.93 2.25 0.04 -2.41 14 14 C -0.21 -3.22 10.09 -39.42 -0.40 -3.61 14 15 C 0.12 1.81 11.17 -17.46 -0.20 1.61 14 16 N -0.49 -9.03 10.33 -9.98 -0.10 -9.13 14 17 C 0.21 4.47 7.32 -16.95 -0.12 4.35 14 18 Cl -0.01 -0.17 28.21 -51.86 -1.46 -1.64 14 19 H 0.28 6.99 8.29 -40.82 -0.34 6.66 14 20 H 0.15 1.65 8.06 -52.49 -0.42 1.23 14 21 H 0.17 1.64 8.06 -52.49 -0.42 1.22 14 LS Contribution 228.07 15.07 3.44 3.44 Total: -1.00 -32.00 228.07 -4.96 -36.96 By element: Atomic # 1 Polarization: -4.42 SS G_CDS: -0.39 Total: -4.81 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.19 Total: -0.17 kcal Atomic # 7 Polarization: -30.14 SS G_CDS: 0.56 Total: -29.58 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.08 Total: -16.07 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.46 Total: -1.64 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -32.00 -4.96 -36.96 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306978379.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.897 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds