Wall clock time and date at job start Mon Mar 30 2020 03:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30550 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48495 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46830 * 299.99926 * 3 2 1 6 6 H 1.48498 * 109.46914 * 59.99472 * 3 2 1 7 7 C 1.40321 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99415 * 180.02562 * 7 2 1 9 9 C 1.46120 * 120.00072 * 0.27583 * 7 2 1 10 10 O 1.21784 * 120.00305 * 353.05610 * 9 7 2 11 11 C 1.47628 * 119.99721 * 173.05476 * 9 7 2 12 12 C 1.40483 * 120.60866 * 94.13893 * 11 9 7 13 13 F 1.35102 * 120.88703 * 0.02651 * 12 11 9 14 14 C 1.38674 * 118.22695 * 180.02562 * 12 11 9 15 15 C 1.38233 * 119.32812 * 0.02562 * 14 12 11 16 16 N 1.32038 * 121.18568 * 0.02562 * 15 14 12 17 17 C 1.31784 * 121.95098 * 359.65552 * 16 15 14 18 18 Cl 1.73603 * 119.73518 * 180.31484 * 17 16 15 19 19 H 0.97002 * 119.99910 * 0.02562 * 1 2 3 20 20 H 1.07996 * 120.33641 * 180.02562 * 14 12 11 21 21 H 1.07994 * 119.40522 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.6995 1.3463 0.0006 5 1 1.8808 2.3963 -1.2125 6 1 1.8807 2.3964 1.2124 7 6 2.0070 -1.2153 0.0005 8 1 3.0870 -1.2152 0.0010 9 6 1.2764 -2.4807 -0.0050 10 8 0.0647 -2.4848 0.1175 11 6 2.0070 -3.7542 -0.1590 12 6 2.4070 -4.4903 0.9687 13 9 2.1326 -4.0513 2.2165 14 6 3.0910 -5.6796 0.7668 15 6 3.3551 -6.0981 -0.5239 16 7 2.9683 -5.3858 -1.5663 17 6 2.3102 -4.2521 -1.4308 18 17 1.8222 -3.3659 -2.8415 19 1 -0.4850 0.8401 -0.0004 20 1 3.4141 -6.2728 1.6094 21 1 3.8881 -7.0238 -0.6826 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306978379.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:50 Heat of formation + Delta-G solvation = -83.141197 kcal Electronic energy + Delta-G solvation = -13337.752815 eV Core-core repulsion = 10539.183339 eV Total energy + Delta-G solvation = -2798.569477 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 229.005 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -50.15756 -41.08060 -38.60761 -37.65334 -34.86075 -33.19467 -32.36768 -28.83689 -25.60817 -24.55249 -22.05878 -19.30718 -18.74558 -18.59222 -17.53566 -16.96303 -16.23537 -16.16625 -15.37348 -15.30115 -15.17686 -14.87073 -13.92029 -13.48995 -13.14365 -12.81995 -12.73712 -12.52136 -12.28192 -12.09870 -11.10547 -11.01643 -10.60788 -10.03215 -9.84279 -8.44507 -7.12059 -0.29765 -0.16533 0.72388 1.28927 1.35799 1.53609 1.93953 2.17587 2.41555 2.84144 3.12208 3.43938 3.62318 3.93403 4.07746 4.42992 4.69528 4.77945 5.14073 5.40222 5.82614 6.41207 6.54945 6.65570 7.94612 8.40574 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.029078 B = 0.010989 C = 0.009301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.703829 B = 2547.466426 C = 3009.741354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.030 3.970 3 Si 0.990 3.010 4 H -0.248 1.248 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.082 0.918 9 C 0.388 3.612 10 O -0.568 6.568 11 C -0.200 4.200 12 C 0.141 3.859 13 F -0.129 7.129 14 C -0.180 4.180 15 C 0.145 3.855 16 N -0.495 5.495 17 C 0.198 3.802 18 Cl -0.023 7.023 19 H 0.285 0.715 20 H 0.202 0.798 21 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.159 -7.749 -0.156 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.188 4.188 3 Si 0.808 3.192 4 H -0.171 1.171 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.100 0.900 9 C 0.283 3.717 10 O -0.458 6.458 11 C -0.206 4.206 12 C 0.114 3.886 13 F -0.108 7.108 14 C -0.200 4.200 15 C -0.012 4.012 16 N -0.207 5.207 17 C 0.035 3.965 18 Cl 0.006 6.994 19 H 0.095 0.905 20 H 0.219 0.781 21 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.527 -7.906 -1.022 11.673 hybrid contribution -0.357 1.305 0.866 1.606 sum 8.170 -6.601 -0.157 10.505 Atomic orbital electron populations 1.70038 1.09604 1.30072 1.32307 1.27106 0.95562 1.04976 0.91162 0.85070 0.79524 0.75290 0.79267 1.17121 1.18508 1.18607 1.21972 0.94891 0.90948 1.48901 0.89961 1.19526 0.87785 0.86712 0.77689 1.90495 1.16996 1.88803 1.49554 1.22300 1.03609 1.01479 0.93182 1.18346 0.97466 0.94363 0.78458 1.91517 1.91621 1.89646 1.38004 1.22652 1.00284 0.94550 1.02492 1.23570 0.93794 0.98824 0.84965 1.67108 1.11690 1.04940 1.37011 1.21428 0.96596 0.91997 0.86480 1.98389 1.89134 1.72895 1.39016 0.90480 0.78136 0.75135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.52 11.85 21.88 0.26 -46.26 14 2 C 0.03 1.65 5.51 85.39 0.47 2.12 14 3 Si 0.99 39.72 29.56 68.60 2.03 41.75 14 4 H -0.25 -9.39 7.11 99.48 0.71 -8.69 14 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 14 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 14 7 C -0.54 -30.32 9.45 24.82 0.23 -30.09 14 8 H 0.08 4.34 7.85 -2.91 -0.02 4.32 14 9 C 0.39 22.61 5.31 26.80 0.14 22.75 14 10 O -0.57 -37.95 15.82 -4.62 -0.07 -38.02 14 11 C -0.20 -9.55 5.57 -19.85 -0.11 -9.66 14 12 C 0.14 5.55 7.38 22.92 0.17 5.72 14 13 F -0.13 -5.47 16.93 44.97 0.76 -4.71 14 14 C -0.18 -4.62 10.09 22.37 0.23 -4.40 14 15 C 0.15 3.47 11.17 84.66 0.95 4.42 14 16 N -0.50 -16.88 10.33 -185.48 -1.92 -18.79 14 17 C 0.20 8.42 7.32 85.10 0.62 9.04 14 18 Cl -0.02 -0.99 28.21 -2.72 -0.08 -1.07 14 19 H 0.28 14.90 8.29 -92.71 -0.77 14.13 14 20 H 0.20 3.08 8.06 -2.91 -0.02 3.05 14 21 H 0.23 2.63 8.06 -2.91 -0.02 2.61 14 Total: -1.00 -75.22 228.07 4.97 -70.26 By element: Atomic # 1 Polarization: -4.36 SS G_CDS: 1.28 Total: -3.07 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 2.70 Total: -0.09 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -1.66 Total: -65.05 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.07 Total: -38.02 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.76 Total: -4.71 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -75.22 4.97 -70.26 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306978379.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.882 kcal (2) G-P(sol) polarization free energy of solvation -75.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds