Wall clock time and date at job start Mon Mar 30 2020 03:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 S 1.76186 * 126.12432 * 317.25448 * 3 2 1 5 5 C 1.70906 * 90.44634 * 180.02562 * 4 3 2 6 6 N 1.37694 * 124.71295 * 179.97438 * 5 4 3 7 7 C 1.36872 * 119.99902 * 179.71950 * 6 5 4 8 8 H 1.08002 * 120.00363 * 359.97438 * 7 6 5 9 9 C 1.38803 * 119.99898 * 179.71943 * 7 6 5 10 10 N 1.31554 * 119.99709 * 0.27479 * 9 7 6 11 11 Si 1.86794 * 119.99855 * 180.27655 * 9 7 6 12 12 H 1.48498 * 109.47176 * 90.00174 * 11 9 7 13 13 H 1.48501 * 109.46931 * 210.00047 * 11 9 7 14 14 H 1.48503 * 109.47412 * 329.99741 * 11 9 7 15 15 N 1.30239 * 110.57298 * 359.68665 * 5 4 3 16 16 C 1.30904 * 117.28814 * 0.25138 * 15 5 4 17 17 Cl 1.73595 * 123.03593 * 180.02562 * 16 15 5 18 18 H 0.97000 * 120.00343 * 359.71316 * 6 5 4 19 19 H 0.97005 * 119.99679 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.6071 -1.0440 0.9659 5 6 4.9951 -0.3109 0.2899 6 7 6.2923 -0.6491 0.6042 7 6 7.3345 -0.0008 -0.0016 8 1 7.1394 0.7757 -0.7265 9 6 8.6421 -0.3377 0.3195 10 7 8.8798 -1.2838 1.2021 11 14 10.0644 0.5523 -0.5017 12 1 10.4356 1.7424 0.3052 13 1 11.2301 -0.3623 -0.5999 14 1 9.6582 0.9844 -1.8632 15 7 4.6553 0.6080 -0.5682 16 6 3.3756 0.8099 -0.7562 17 17 2.7572 1.9949 -1.8638 18 1 6.4676 -1.3466 1.2550 19 1 9.7937 -1.5195 1.4263 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307013798.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:49 Heat of formation + Delta-G solvation = 59.488276 kcal Electronic energy + Delta-G solvation = -10789.984072 eV Core-core repulsion = 8460.272306 eV Total energy + Delta-G solvation = -2329.711766 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 228.977 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.83228 -36.55197 -35.75901 -35.35649 -32.54679 -28.79735 -26.20865 -23.62536 -20.82011 -18.82302 -18.55565 -16.32749 -15.76060 -15.09534 -14.48909 -14.27579 -13.88526 -12.77752 -12.44589 -12.32612 -12.01750 -11.99668 -11.43700 -11.22959 -11.10024 -10.77214 -10.39051 -10.36030 -9.25973 -8.79318 -8.46537 -7.37419 -7.33216 -4.37902 1.19936 1.82160 2.05218 2.78806 2.80833 2.86358 2.92254 3.34547 3.56508 3.83979 4.12309 4.37237 4.46505 5.07323 5.91003 6.41070 6.68872 6.94073 7.84351 8.20668 8.32766 8.36276 8.86771 9.72929 Molecular weight = 228.98amu Principal moments of inertia in cm(-1) A = 0.041285 B = 0.007687 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.052076 B = 3641.467635 C = 4309.671718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.323 3.677 3 C -0.338 4.338 4 S 0.074 5.926 5 C 0.244 3.756 6 N -0.435 5.435 7 C -0.261 4.261 8 H 0.131 0.869 9 C 0.030 3.970 10 N -0.845 5.845 11 Si 0.952 3.048 12 H -0.266 1.266 13 H -0.274 1.274 14 H -0.257 1.257 15 N -0.572 5.572 16 C 0.289 3.711 17 Cl -0.029 7.029 18 H 0.419 0.581 19 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 0.900 -0.847 1.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.160 5.160 2 C 0.011 3.989 3 C -0.471 4.471 4 S 0.317 5.683 5 C -0.123 4.123 6 N -0.039 5.039 7 C -0.398 4.398 8 H 0.148 0.852 9 C -0.183 4.183 10 N -0.477 5.477 11 Si 0.775 3.225 12 H -0.191 1.191 13 H -0.199 1.199 14 H -0.181 1.181 15 N -0.300 5.300 16 C 0.109 3.891 17 Cl -0.001 7.001 18 H 0.258 0.742 19 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.125 0.313 -0.316 0.462 hybrid contribution 0.971 0.754 -0.675 1.403 sum 0.845 1.067 -0.991 1.684 Atomic orbital electron populations 1.81131 1.11372 1.11458 1.12063 1.23961 0.90511 0.92277 0.92126 1.19428 0.88789 1.17572 1.21286 1.83180 0.95328 1.41858 1.47972 1.22272 0.90404 0.99158 1.00462 1.40702 1.00313 1.29950 1.32906 1.20562 0.83422 1.16263 1.19566 0.85152 1.25840 0.99995 0.96324 0.96120 1.69647 1.24601 1.25798 1.27653 0.85463 0.77964 0.78919 0.80108 1.19117 1.19886 1.18074 1.65221 1.14966 1.24423 1.25405 1.20208 0.87739 0.90234 0.90882 1.98350 1.85165 1.55742 1.60870 0.74226 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -9.89 18.54 41.83 0.78 -9.12 13 2 C 0.32 6.48 15.44 -22.47 -0.35 6.13 13 3 C -0.34 -6.72 6.40 -38.08 -0.24 -6.96 13 4 S 0.07 1.36 23.19 -107.50 -2.49 -1.13 13 5 C 0.24 5.08 7.98 -88.11 -0.70 4.38 13 6 N -0.44 -9.13 5.39 -12.96 -0.07 -9.20 13 7 C -0.26 -5.72 9.77 -15.09 -0.15 -5.86 13 8 H 0.13 2.94 7.31 -52.49 -0.38 2.56 13 9 C 0.03 0.62 5.50 -17.46 -0.10 0.52 13 10 N -0.85 -18.13 13.05 55.49 0.72 -17.40 13 11 Si 0.95 16.49 29.55 -169.99 -5.02 11.47 13 12 H -0.27 -4.61 7.11 56.52 0.40 -4.21 13 13 H -0.27 -4.68 7.11 56.52 0.40 -4.28 13 14 H -0.26 -4.48 7.11 56.52 0.40 -4.08 13 15 N -0.57 -12.47 9.70 -11.84 -0.11 -12.58 13 16 C 0.29 5.89 7.41 -18.37 -0.14 5.76 13 17 Cl -0.03 -0.53 28.83 -51.86 -1.50 -2.02 13 18 H 0.42 8.38 8.01 -40.82 -0.33 8.06 13 19 H 0.29 5.83 8.31 -40.82 -0.34 5.49 13 LS Contribution 225.70 15.07 3.40 3.40 Total: -1.00 -23.27 225.70 -5.81 -29.08 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 0.15 Total: 3.54 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -1.67 Total: 3.96 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 1.31 Total: -48.30 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.02 Total: 11.47 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.49 Total: -1.13 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -23.27 -5.81 -29.08 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307013798.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.569 kcal (2) G-P(sol) polarization free energy of solvation -23.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds