Wall clock time and date at job start Mon Mar 30 2020 03:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 S 1.76186 * 126.12432 * 317.25448 * 3 2 1 5 5 C 1.70906 * 90.44634 * 180.02562 * 4 3 2 6 6 N 1.37694 * 124.71295 * 179.97438 * 5 4 3 7 7 C 1.36872 * 119.99902 * 179.71950 * 6 5 4 8 8 H 1.08002 * 120.00363 * 359.97438 * 7 6 5 9 9 C 1.38803 * 119.99898 * 179.71943 * 7 6 5 10 10 N 1.31554 * 119.99709 * 0.27479 * 9 7 6 11 11 Si 1.86794 * 119.99855 * 180.27655 * 9 7 6 12 12 H 1.48498 * 109.47176 * 90.00174 * 11 9 7 13 13 H 1.48501 * 109.46931 * 210.00047 * 11 9 7 14 14 H 1.48503 * 109.47412 * 329.99741 * 11 9 7 15 15 N 1.30239 * 110.57298 * 359.68665 * 5 4 3 16 16 C 1.30904 * 117.28814 * 0.25138 * 15 5 4 17 17 Cl 1.73595 * 123.03593 * 180.02562 * 16 15 5 18 18 H 0.97000 * 120.00343 * 359.71316 * 6 5 4 19 19 H 0.97005 * 119.99679 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.6071 -1.0440 0.9659 5 6 4.9951 -0.3109 0.2899 6 7 6.2923 -0.6491 0.6042 7 6 7.3345 -0.0008 -0.0016 8 1 7.1394 0.7757 -0.7265 9 6 8.6421 -0.3377 0.3195 10 7 8.8798 -1.2838 1.2021 11 14 10.0644 0.5523 -0.5017 12 1 10.4356 1.7424 0.3052 13 1 11.2301 -0.3623 -0.5999 14 1 9.6582 0.9844 -1.8632 15 7 4.6553 0.6080 -0.5682 16 6 3.3756 0.8099 -0.7562 17 17 2.7572 1.9949 -1.8638 18 1 6.4676 -1.3466 1.2550 19 1 9.7937 -1.5195 1.4263 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307013798.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:49 Heat of formation + Delta-G solvation = 47.285483 kcal Electronic energy + Delta-G solvation = -10790.513224 eV Core-core repulsion = 8460.272306 eV Total energy + Delta-G solvation = -2330.240919 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 228.977 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45738 -38.11541 -37.33607 -36.96364 -34.13705 -30.42657 -27.82738 -25.23647 -22.43017 -20.42167 -20.15637 -17.93935 -17.32849 -16.66844 -16.11086 -15.77752 -15.44254 -14.40675 -14.05623 -13.87114 -13.59676 -13.54314 -12.86952 -12.82946 -12.65457 -12.11725 -11.89230 -11.88728 -10.82235 -10.41321 -10.03290 -8.93215 -8.92938 -6.02607 -0.39211 0.25362 0.47697 1.19832 1.40606 1.45347 1.57883 1.76975 2.12592 2.23226 2.50602 2.78452 2.86657 3.44400 4.28469 4.78885 5.11346 5.31179 6.24786 6.60080 6.70813 6.74670 7.27131 8.18706 Molecular weight = 228.98amu Principal moments of inertia in cm(-1) A = 0.041285 B = 0.007687 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.052076 B = 3641.467635 C = 4309.671718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.331 3.669 3 C -0.344 4.344 4 S 0.131 5.869 5 C 0.235 3.765 6 N -0.441 5.441 7 C -0.288 4.288 8 H 0.119 0.881 9 C 0.004 3.996 10 N -0.869 5.869 11 Si 1.009 2.991 12 H -0.264 1.264 13 H -0.268 1.268 14 H -0.260 1.260 15 N -0.595 5.595 16 C 0.279 3.721 17 Cl -0.011 7.011 18 H 0.421 0.579 19 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 0.944 -0.884 1.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C 0.019 3.981 3 C -0.477 4.477 4 S 0.374 5.626 5 C -0.132 4.132 6 N -0.046 5.046 7 C -0.425 4.425 8 H 0.136 0.864 9 C -0.206 4.206 10 N -0.502 5.502 11 Si 0.829 3.171 12 H -0.189 1.189 13 H -0.192 1.192 14 H -0.184 1.184 15 N -0.324 5.324 16 C 0.101 3.899 17 Cl 0.017 6.983 18 H 0.260 0.740 19 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.210 0.351 -0.347 0.536 hybrid contribution 0.805 0.742 -0.664 1.280 sum 0.595 1.093 -1.011 1.604 Atomic orbital electron populations 1.81145 1.11610 1.11726 1.12310 1.23900 0.90390 0.91986 0.91840 1.19699 0.88955 1.17712 1.21286 1.82987 0.93012 1.40182 1.46389 1.22611 0.91170 0.99131 1.00319 1.40683 1.00304 1.30310 1.33319 1.20559 0.84275 1.17104 1.20576 0.86369 1.26503 1.01284 0.96592 0.96228 1.69676 1.25343 1.26657 1.28495 0.84655 0.75512 0.77966 0.78942 1.18924 1.19203 1.18436 1.65274 1.15769 1.25210 1.26177 1.20401 0.87478 0.90755 0.91312 1.98351 1.84803 1.54965 1.60174 0.73967 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -19.17 18.54 19.00 0.35 -18.81 13 2 C 0.33 12.61 15.44 88.33 1.36 13.98 13 3 C -0.34 -13.07 6.40 23.24 0.15 -12.92 13 4 S 0.13 4.59 23.19 -56.49 -1.31 3.28 13 5 C 0.23 9.58 7.98 179.47 1.43 11.01 13 6 N -0.44 -18.42 5.39 -194.92 -1.05 -19.48 13 7 C -0.29 -12.67 9.77 84.04 0.82 -11.85 13 8 H 0.12 5.39 7.31 -2.91 -0.02 5.37 13 9 C 0.00 0.15 5.50 84.87 0.47 0.62 13 10 N -0.87 -36.94 13.05 21.65 0.28 -36.66 13 11 Si 1.01 33.17 29.55 68.60 2.03 35.20 13 12 H -0.26 -8.56 7.11 99.48 0.71 -7.86 13 13 H -0.27 -8.45 7.11 99.48 0.71 -7.74 13 14 H -0.26 -8.62 7.11 99.48 0.71 -7.91 13 15 N -0.60 -25.49 9.70 -191.38 -1.86 -27.34 13 16 C 0.28 11.03 7.41 84.56 0.63 11.66 13 17 Cl -0.01 -0.38 28.83 -2.72 -0.08 -0.46 13 18 H 0.42 16.79 8.01 -92.71 -0.74 16.05 13 19 H 0.30 11.69 8.31 -92.70 -0.77 10.92 13 Total: -1.00 -46.76 225.70 3.81 -42.95 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.59 Total: 8.83 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 4.86 Total: 12.50 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -2.27 Total: -102.29 kcal Atomic # 14 Polarization: 33.17 SS G_CDS: 2.03 Total: 35.20 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.31 Total: 3.28 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.46 kcal Total: -46.76 3.81 -42.95 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307013798.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.235 kcal (2) G-P(sol) polarization free energy of solvation -46.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds