Wall clock time and date at job start Mon Mar 30 2020 03:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36902 * 120.00261 * 2 1 4 4 H 1.07993 * 120.00521 * 200.20752 * 3 2 1 5 5 C 1.38991 * 119.99865 * 20.48142 * 3 2 1 6 6 N 1.31414 * 119.99971 * 21.20869 * 5 3 2 7 7 Si 1.86797 * 120.00225 * 201.20898 * 5 3 2 8 8 H 1.48506 * 109.47220 * 89.99616 * 7 5 3 9 9 H 1.48499 * 109.47436 * 210.00056 * 7 5 3 10 10 H 1.48504 * 109.46828 * 330.00057 * 7 5 3 11 11 C 1.34779 * 119.99648 * 180.02562 * 2 1 3 12 12 O 1.21785 * 119.99484 * 179.97438 * 11 2 1 13 13 C 1.46175 * 120.00238 * 359.97438 * 11 2 1 14 14 S 1.75821 * 125.47169 * 351.61909 * 13 11 2 15 15 C 1.70595 * 91.61334 * 179.97438 * 14 13 11 16 16 C 1.33763 * 111.05270 * 359.97438 * 15 14 13 17 17 C 1.37051 * 125.46752 * 171.30344 * 13 11 2 18 18 F 1.35096 * 123.41468 * 0.02657 * 17 13 11 19 19 H 1.08995 * 109.46808 * 23.37375 * 1 2 3 20 20 H 1.09001 * 109.46918 * 143.37105 * 1 2 3 21 21 H 1.08994 * 109.46853 * 263.37221 * 1 2 3 22 22 H 0.96997 * 120.00347 * 180.02562 * 6 5 3 23 23 H 1.07995 * 124.47106 * 179.97438 * 15 14 13 24 24 H 1.07999 * 122.44463 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.1797 1.2144 -0.3230 5 6 1.5206 2.3512 0.4212 6 7 0.4582 2.2830 1.1916 7 14 2.1853 4.0148 -0.1078 8 1 1.5412 4.4228 -1.3822 9 1 1.8889 5.0229 0.9415 10 1 3.6544 3.9213 -0.3035 11 6 2.1389 -1.1673 -0.0005 12 8 3.3567 -1.1672 -0.0010 13 6 1.4080 -2.4332 -0.0005 14 16 -0.3289 -2.6085 0.2088 15 6 -0.2231 -4.3054 0.0691 16 6 1.0425 -4.6938 -0.1224 17 6 1.9658 -3.6735 -0.1698 18 9 3.2880 -3.8749 -0.3604 19 1 -0.3633 0.9433 -0.4077 20 1 -0.3633 -0.8247 -0.6131 21 1 -0.3633 -0.1186 1.0208 22 1 0.0189 3.0964 1.4853 23 1 -1.0665 -4.9773 0.1275 24 1 1.3194 -5.7316 -0.2347 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307304290.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:47 Heat of formation + Delta-G solvation = -31.514874 kcal Electronic energy + Delta-G solvation = -13726.175867 eV Core-core repulsion = 11067.721877 eV Total energy + Delta-G solvation = -2658.453990 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.14734 -38.54607 -36.73289 -34.74439 -31.94076 -29.29877 -26.60144 -25.23740 -23.72456 -20.81771 -18.88095 -17.65438 -17.04687 -15.86173 -15.60423 -15.18547 -14.64912 -14.15155 -13.98770 -13.86633 -13.40036 -12.48495 -12.29189 -11.98451 -11.78567 -11.59074 -11.31217 -11.07490 -10.56059 -10.43091 -10.03630 -9.17770 -8.62680 -8.37312 -8.10239 -7.76165 -6.57939 -3.97383 0.93335 1.87607 2.32807 2.66733 3.10716 3.17574 3.23162 3.98414 4.13750 4.62558 4.85665 4.96472 5.41236 5.52814 5.71695 5.92957 6.06612 6.32803 6.50363 6.84044 6.86589 7.38798 7.93228 8.28818 8.99672 9.17392 9.80680 10.46806 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.045260 B = 0.008884 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.494086 B = 3151.098679 C = 3699.648270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.425 5.425 3 C -0.300 4.300 4 H 0.108 0.892 5 C 0.032 3.968 6 N -0.863 5.863 7 Si 0.929 3.071 8 H -0.274 1.274 9 H -0.282 1.282 10 H -0.266 1.266 11 C 0.498 3.502 12 O -0.573 6.573 13 C -0.261 4.261 14 S 0.263 5.737 15 C -0.281 4.281 16 C -0.168 4.168 17 C 0.110 3.890 18 F -0.115 7.115 19 H 0.095 0.905 20 H 0.040 0.960 21 H 0.066 0.934 22 H 0.274 0.726 23 H 0.163 0.837 24 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.729 -7.105 -1.955 9.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.142 5.142 3 C -0.429 4.429 4 H 0.126 0.874 5 C -0.174 4.174 6 N -0.500 5.500 7 Si 0.755 3.245 8 H -0.200 1.200 9 H -0.207 1.207 10 H -0.190 1.190 11 C 0.287 3.713 12 O -0.459 6.459 13 C -0.384 4.384 14 S 0.530 5.470 15 C -0.418 4.418 16 C -0.200 4.200 17 C 0.076 3.924 18 F -0.094 7.094 19 H 0.113 0.887 20 H 0.057 0.943 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.181 0.819 24 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.423 -5.990 -1.628 9.676 hybrid contribution 1.393 -0.478 -0.347 1.513 sum -6.029 -6.468 -1.976 9.060 Atomic orbital electron populations 1.21803 0.81715 1.00707 1.01286 1.43530 1.05244 1.04954 1.60461 1.19810 0.99019 0.82740 1.41303 0.87431 1.25413 0.96766 1.00440 0.94738 1.70035 1.21047 1.30085 1.28823 0.85869 0.79842 0.80390 0.78409 1.20023 1.20745 1.19015 1.16531 0.87050 0.81578 0.86109 1.90715 1.12314 1.85937 1.56936 1.25126 0.98223 0.98523 1.16489 1.83835 1.01532 0.95674 1.65958 1.25540 1.00774 1.05439 1.10055 1.19643 0.92226 0.99968 1.08186 1.16753 0.79186 0.91754 1.04687 1.91498 1.30172 1.95320 1.92369 0.88677 0.94270 0.91614 0.91631 0.81921 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.95 7.26 59.85 0.43 2.39 14 2 N -0.43 -11.03 3.01 -123.86 -0.37 -11.40 14 3 C -0.30 -8.26 9.26 -15.01 -0.14 -8.40 14 4 H 0.11 3.11 7.42 -52.49 -0.39 2.72 14 5 C 0.03 0.82 4.84 -17.45 -0.08 0.73 14 6 N -0.86 -21.88 11.13 55.50 0.62 -21.26 14 7 Si 0.93 19.82 29.60 -169.99 -5.03 14.79 14 8 H -0.27 -5.70 7.11 56.52 0.40 -5.30 14 9 H -0.28 -5.91 7.11 56.52 0.40 -5.51 14 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 14 11 C 0.50 13.16 7.58 -13.07 -0.10 13.06 14 12 O -0.57 -17.25 15.85 5.11 0.08 -17.17 14 13 C -0.26 -5.65 6.23 -36.83 -0.23 -5.88 14 14 S 0.26 4.20 17.87 -107.50 -1.92 2.27 14 15 C -0.28 -3.89 10.91 29.16 0.32 -3.57 14 16 C -0.17 -2.65 10.15 -41.35 -0.42 -3.07 14 17 C 0.11 2.23 7.47 -40.21 -0.30 1.93 14 18 F -0.12 -2.56 16.46 2.25 0.04 -2.52 14 19 H 0.09 2.10 6.60 -51.93 -0.34 1.76 14 20 H 0.04 0.73 4.62 -23.17 -0.11 0.63 14 21 H 0.07 1.41 7.61 -51.93 -0.40 1.01 14 22 H 0.27 6.47 8.31 -40.82 -0.34 6.13 14 23 H 0.16 1.67 8.06 -52.49 -0.42 1.24 14 24 H 0.14 1.82 8.06 -52.49 -0.42 1.40 14 LS Contribution 229.64 15.07 3.46 3.46 Total: -1.00 -31.06 229.64 -4.86 -35.92 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -1.21 Total: -1.27 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.52 Total: -2.82 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.25 Total: -32.66 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.08 Total: -17.17 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.92 Total: 2.27 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -31.06 -4.86 -35.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307304290.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.408 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds