Wall clock time and date at job start Mon Mar 30 2020 03:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36902 * 120.00261 * 2 1 4 4 H 1.07993 * 120.00521 * 200.20752 * 3 2 1 5 5 C 1.38991 * 119.99865 * 20.48142 * 3 2 1 6 6 N 1.31414 * 119.99971 * 21.20869 * 5 3 2 7 7 Si 1.86797 * 120.00225 * 201.20898 * 5 3 2 8 8 H 1.48506 * 109.47220 * 89.99616 * 7 5 3 9 9 H 1.48499 * 109.47436 * 210.00056 * 7 5 3 10 10 H 1.48504 * 109.46828 * 330.00057 * 7 5 3 11 11 C 1.34779 * 119.99648 * 180.02562 * 2 1 3 12 12 O 1.21785 * 119.99484 * 179.97438 * 11 2 1 13 13 C 1.46175 * 120.00238 * 359.97438 * 11 2 1 14 14 S 1.75821 * 125.47169 * 351.61909 * 13 11 2 15 15 C 1.70595 * 91.61334 * 179.97438 * 14 13 11 16 16 C 1.33763 * 111.05270 * 359.97438 * 15 14 13 17 17 C 1.37051 * 125.46752 * 171.30344 * 13 11 2 18 18 F 1.35096 * 123.41468 * 0.02657 * 17 13 11 19 19 H 1.08995 * 109.46808 * 23.37375 * 1 2 3 20 20 H 1.09001 * 109.46918 * 143.37105 * 1 2 3 21 21 H 1.08994 * 109.46853 * 263.37221 * 1 2 3 22 22 H 0.96997 * 120.00347 * 180.02562 * 6 5 3 23 23 H 1.07995 * 124.47106 * 179.97438 * 15 14 13 24 24 H 1.07999 * 122.44463 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.1797 1.2144 -0.3230 5 6 1.5206 2.3512 0.4212 6 7 0.4582 2.2830 1.1916 7 14 2.1853 4.0148 -0.1078 8 1 1.5412 4.4228 -1.3822 9 1 1.8889 5.0229 0.9415 10 1 3.6544 3.9213 -0.3035 11 6 2.1389 -1.1673 -0.0005 12 8 3.3567 -1.1672 -0.0010 13 6 1.4080 -2.4332 -0.0005 14 16 -0.3289 -2.6085 0.2088 15 6 -0.2231 -4.3054 0.0691 16 6 1.0425 -4.6938 -0.1224 17 6 1.9658 -3.6735 -0.1698 18 9 3.2880 -3.8749 -0.3604 19 1 -0.3633 0.9433 -0.4077 20 1 -0.3633 -0.8247 -0.6131 21 1 -0.3633 -0.1186 1.0208 22 1 0.0189 3.0964 1.4853 23 1 -1.0665 -4.9773 0.1275 24 1 1.3194 -5.7316 -0.2347 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307304290.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:47 Heat of formation + Delta-G solvation = -52.892398 kcal Electronic energy + Delta-G solvation = -13727.102866 eV Core-core repulsion = 11067.721877 eV Total energy + Delta-G solvation = -2659.380989 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.80829 -40.45163 -38.16718 -36.73600 -33.90611 -30.85915 -28.40617 -27.00505 -25.28636 -22.46979 -20.40466 -19.36529 -18.95182 -17.47574 -17.40064 -16.85962 -16.44820 -15.90630 -15.75129 -15.28701 -14.82587 -14.29489 -13.92851 -13.85545 -13.45007 -13.26262 -12.93938 -12.65204 -12.48823 -12.14608 -11.48766 -11.05458 -10.66768 -9.95634 -9.80915 -9.27930 -8.50731 -6.04170 -0.50513 0.44324 1.02075 1.26393 1.41405 1.43237 1.53734 2.21454 2.24383 2.86618 2.99437 3.45052 3.84436 4.11882 4.27445 4.54154 4.76390 4.81636 4.98985 5.11107 5.36344 5.40265 5.95164 6.33382 7.00925 7.22890 7.84595 8.53321 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.045260 B = 0.008884 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.494086 B = 3151.098679 C = 3699.648270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.439 5.439 3 C -0.352 4.352 4 H 0.073 0.927 5 C 0.008 3.992 6 N -0.876 5.876 7 Si 0.994 3.006 8 H -0.259 1.259 9 H -0.268 1.268 10 H -0.278 1.278 11 C 0.484 3.516 12 O -0.633 6.633 13 C -0.329 4.329 14 S 0.321 5.679 15 C -0.232 4.232 16 C -0.180 4.180 17 C 0.107 3.893 18 F -0.136 7.136 19 H 0.085 0.915 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.283 0.717 23 H 0.219 0.781 24 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 -8.455 -1.971 12.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.155 5.155 3 C -0.480 4.480 4 H 0.091 0.909 5 C -0.197 4.197 6 N -0.512 5.512 7 Si 0.816 3.184 8 H -0.184 1.184 9 H -0.193 1.193 10 H -0.203 1.203 11 C 0.275 3.725 12 O -0.524 6.524 13 C -0.450 4.450 14 S 0.588 5.412 15 C -0.369 4.369 16 C -0.210 4.210 17 C 0.071 3.929 18 F -0.114 7.114 19 H 0.104 0.896 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.093 0.907 23 H 0.235 0.765 24 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.385 -7.328 -1.637 12.816 hybrid contribution 2.186 -0.272 -0.308 2.224 sum -8.200 -7.600 -1.944 11.348 Atomic orbital electron populations 1.21834 0.79316 1.01689 1.01811 1.43716 1.06826 1.04469 1.60483 1.19667 0.98721 0.84715 1.44926 0.90870 1.26135 0.96869 1.02885 0.93775 1.70058 1.21357 1.31460 1.28340 0.84944 0.78447 0.76159 0.78843 1.18362 1.19253 1.20343 1.17260 0.86903 0.83326 0.84991 1.90632 1.15052 1.87371 1.59301 1.24885 1.02244 0.96705 1.21180 1.83398 0.96153 0.97345 1.64341 1.26150 1.01555 1.04618 1.04624 1.19854 0.91730 1.00451 1.09012 1.17534 0.78958 0.92893 1.03499 1.91438 1.32129 1.95457 1.92421 0.89627 0.91209 0.91618 0.90701 0.76452 0.80708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.22 7.26 127.77 0.93 5.15 14 2 N -0.44 -23.77 3.01 -663.97 -2.00 -25.77 14 3 C -0.35 -20.49 9.26 84.08 0.78 -19.71 14 4 H 0.07 4.62 7.42 -2.91 -0.02 4.60 14 5 C 0.01 0.42 4.84 84.94 0.41 0.83 14 6 N -0.88 -44.49 11.13 21.67 0.24 -44.25 14 7 Si 0.99 41.19 29.60 68.60 2.03 43.22 14 8 H -0.26 -10.06 7.11 99.48 0.71 -9.35 14 9 H -0.27 -10.44 7.11 99.48 0.71 -9.73 14 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 14 11 C 0.48 26.91 7.58 86.30 0.65 27.57 14 12 O -0.63 -41.01 15.85 -4.62 -0.07 -41.08 14 13 C -0.33 -14.24 6.23 24.05 0.15 -14.09 14 14 S 0.32 9.14 17.87 -56.49 -1.01 8.13 14 15 C -0.23 -5.04 10.91 66.80 0.73 -4.31 14 16 C -0.18 -4.94 10.15 21.12 0.21 -4.73 14 17 C 0.11 4.25 7.47 21.86 0.16 4.42 14 18 F -0.14 -6.19 16.46 44.97 0.74 -5.45 14 19 H 0.09 3.79 6.60 -2.39 -0.02 3.78 14 20 H 0.07 2.50 4.62 -20.67 -0.10 2.40 14 21 H 0.07 2.78 7.61 -2.39 -0.02 2.76 14 22 H 0.28 13.14 8.31 -92.71 -0.77 12.37 14 23 H 0.22 2.52 8.06 -2.91 -0.02 2.50 14 24 H 0.18 3.62 8.06 -2.91 -0.02 3.59 14 Total: -1.00 -73.57 229.64 5.11 -68.46 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 1.15 Total: 1.61 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 4.03 Total: -4.87 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -1.76 Total: -70.02 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.07 Total: -41.08 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.74 Total: -5.45 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 9.14 SS G_CDS: -1.01 Total: 8.13 kcal Total: -73.57 5.11 -68.46 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307304290.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.569 kcal (2) G-P(sol) polarization free energy of solvation -73.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds