Wall clock time and date at job start Mon Mar 30 2020 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99511 * 2 1 4 4 H 1.48503 * 109.47004 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47062 * 300.00126 * 3 2 1 6 6 H 1.48496 * 109.47297 * 60.00267 * 3 2 1 7 7 C 1.37872 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00060 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47588 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00491 * 179.97438 * 10 9 7 12 12 O 1.21643 * 119.99745 * 0.02562 * 11 10 9 13 13 C 1.46832 * 120.00176 * 180.02562 * 11 10 9 14 14 C 1.32977 * 124.65348 * 180.02562 * 13 11 10 15 15 Cl 1.73604 * 124.64695 * 0.02562 * 14 13 11 16 16 C 1.51112 * 110.70200 * 179.97438 * 14 13 11 17 17 C 1.54564 * 104.85931 * 343.37632 * 16 14 13 18 18 C 1.51120 * 124.65099 * 0.02562 * 13 11 10 19 19 H 0.96993 * 120.00797 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47371 * 60.00251 * 9 7 2 21 21 H 1.09003 * 109.47334 * 299.99983 * 9 7 2 22 22 H 0.97002 * 119.99694 * 0.02562 * 10 9 7 23 23 H 1.08999 * 110.36412 * 224.52572 * 16 14 13 24 24 H 1.09005 * 110.36157 * 102.21805 * 16 14 13 25 25 H 1.09003 * 110.97513 * 266.98109 * 17 16 14 26 26 H 1.08998 * 110.97719 * 143.20601 * 17 16 14 27 27 H 1.08999 * 110.36049 * 77.80254 * 18 13 11 28 28 H 1.08998 * 110.35959 * 315.49168 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8901 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7541 -4.8833 0.0000 12 8 0.5582 -5.1057 0.0000 13 6 2.7083 -5.9993 0.0006 14 6 2.3683 -7.2849 0.0006 15 17 0.7353 -7.8739 -0.0006 16 6 3.5983 -8.1627 0.0006 17 6 4.7526 -7.2278 -0.4268 18 6 4.2116 -5.8444 0.0012 19 1 -0.4851 0.8399 -0.0004 20 1 0.6243 -2.5568 -0.8903 21 1 0.6249 -2.5571 0.8897 22 1 3.1569 -3.4353 -0.0002 23 1 3.4838 -8.9761 -0.7159 24 1 3.7814 -8.5591 0.9994 25 1 4.9095 -7.2693 -1.5047 26 1 5.6701 -7.4705 0.1092 27 1 4.5663 -5.5907 1.0001 28 1 4.5144 -5.0808 -0.7152 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307347019.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:26 Heat of formation + Delta-G solvation = -41.223283 kcal Electronic energy + Delta-G solvation = -13479.383124 eV Core-core repulsion = 10941.924744 eV Total energy + Delta-G solvation = -2537.458380 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.061 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.46464 -37.47879 -36.05098 -34.16472 -32.31709 -29.55373 -28.38866 -26.96356 -23.11435 -21.53113 -20.44136 -18.62969 -17.40317 -15.97726 -15.88466 -15.09495 -14.49494 -14.14274 -13.68552 -13.02657 -12.76414 -12.52306 -12.28530 -12.12314 -11.91719 -11.62884 -11.33357 -11.05211 -10.93759 -10.90709 -10.51735 -10.29562 -9.37189 -9.01515 -8.73759 -8.65016 -7.83081 -6.15949 -4.22883 1.40562 2.32648 3.23804 3.30742 3.33792 3.89311 4.02304 4.33623 4.50889 4.56968 4.82224 5.19977 5.20229 5.38719 5.50242 5.56183 5.67446 5.78570 5.99334 6.09476 6.29214 7.32883 7.44457 7.53312 7.67902 7.97656 8.63563 8.78932 9.10750 9.43749 10.94340 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.042893 B = 0.006060 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.634909 B = 4619.199042 C = 5234.624295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.704 5.704 11 C 0.539 3.461 12 O -0.536 6.536 13 C -0.162 4.162 14 C -0.034 4.034 15 Cl -0.038 7.038 16 C -0.087 4.087 17 C -0.119 4.119 18 C -0.089 4.089 19 H 0.265 0.735 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.390 0.610 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.274 -14.150 -0.127 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.352 5.352 11 C 0.325 3.675 12 O -0.416 6.416 13 C -0.166 4.166 14 C -0.063 4.063 15 Cl -0.009 7.009 16 C -0.125 4.125 17 C -0.156 4.156 18 C -0.126 4.126 19 H 0.075 0.925 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.223 0.777 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.087 -14.185 -0.127 16.846 hybrid contribution 0.631 1.033 0.031 1.211 sum 9.718 -13.152 -0.096 16.353 Atomic orbital electron populations 1.69983 1.06104 1.27191 1.48961 1.24952 0.94909 0.99449 0.94716 0.86363 0.79820 0.82982 0.77750 1.19631 1.20800 1.20798 1.21254 0.93281 0.90425 1.53119 0.91859 1.19134 0.88308 0.81855 0.97864 1.46380 1.11126 1.05914 1.71807 1.17765 0.87827 0.83111 0.78829 1.90817 1.15684 1.84744 1.50328 1.22185 0.96473 0.93540 1.04451 1.24059 0.87312 0.94681 1.00230 1.98389 1.18211 1.88317 1.95937 1.21436 0.90231 0.97781 1.03043 1.22418 0.97308 0.93921 1.01985 1.21224 0.89995 0.98476 1.02908 0.92495 0.95378 0.95396 0.77708 0.89818 0.89252 0.90391 0.89974 0.89478 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.24 13.29 55.43 0.74 -25.51 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 15 8 H 0.06 1.61 7.60 -52.48 -0.40 1.21 15 9 C 0.25 6.70 5.43 -5.20 -0.03 6.68 15 10 N -0.70 -15.29 5.54 -62.76 -0.35 -15.64 15 11 C 0.54 11.42 7.79 -12.79 -0.10 11.32 15 12 O -0.54 -13.37 14.99 5.24 0.08 -13.29 15 13 C -0.16 -2.58 6.10 -102.77 -0.63 -3.21 15 14 C -0.03 -0.49 6.77 -35.93 -0.24 -0.74 15 15 Cl -0.04 -0.62 27.25 -51.86 -1.41 -2.03 15 16 C -0.09 -0.85 6.80 -26.86 -0.18 -1.04 15 17 C -0.12 -1.02 7.16 -25.08 -0.18 -1.20 15 18 C -0.09 -1.00 6.02 -26.85 -0.16 -1.17 15 19 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 20 H 0.03 0.84 8.14 -51.93 -0.42 0.41 15 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.39 7.23 7.32 -40.82 -0.30 6.93 15 23 H 0.08 0.71 8.14 -51.93 -0.42 0.28 15 24 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.08 0.63 8.14 -51.93 -0.42 0.20 15 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 27 H 0.09 0.90 8.14 -51.93 -0.42 0.47 15 28 H 0.08 0.91 7.82 -51.93 -0.41 0.51 15 LS Contribution 260.76 15.07 3.93 3.93 Total: -1.00 -32.23 260.76 -7.17 -39.41 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -3.20 Total: 0.08 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.94 Total: -2.81 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.39 Total: -41.14 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.41 Total: -2.03 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.23 -7.17 -39.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307347019.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.817 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds