Wall clock time and date at job start Mon Mar 30 2020 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99511 * 2 1 4 4 H 1.48503 * 109.47004 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47062 * 300.00126 * 3 2 1 6 6 H 1.48496 * 109.47297 * 60.00267 * 3 2 1 7 7 C 1.37872 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00060 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47588 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00491 * 179.97438 * 10 9 7 12 12 O 1.21643 * 119.99745 * 0.02562 * 11 10 9 13 13 C 1.46832 * 120.00176 * 180.02562 * 11 10 9 14 14 C 1.32977 * 124.65348 * 180.02562 * 13 11 10 15 15 Cl 1.73604 * 124.64695 * 0.02562 * 14 13 11 16 16 C 1.51112 * 110.70200 * 179.97438 * 14 13 11 17 17 C 1.54564 * 104.85931 * 343.37632 * 16 14 13 18 18 C 1.51120 * 124.65099 * 0.02562 * 13 11 10 19 19 H 0.96993 * 120.00797 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47371 * 60.00251 * 9 7 2 21 21 H 1.09003 * 109.47334 * 299.99983 * 9 7 2 22 22 H 0.97002 * 119.99694 * 0.02562 * 10 9 7 23 23 H 1.08999 * 110.36412 * 224.52572 * 16 14 13 24 24 H 1.09005 * 110.36157 * 102.21805 * 16 14 13 25 25 H 1.09003 * 110.97513 * 266.98109 * 17 16 14 26 26 H 1.08998 * 110.97719 * 143.20601 * 17 16 14 27 27 H 1.08999 * 110.36049 * 77.80254 * 18 13 11 28 28 H 1.08998 * 110.35959 * 315.49168 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8901 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7541 -4.8833 0.0000 12 8 0.5582 -5.1057 0.0000 13 6 2.7083 -5.9993 0.0006 14 6 2.3683 -7.2849 0.0006 15 17 0.7353 -7.8739 -0.0006 16 6 3.5983 -8.1627 0.0006 17 6 4.7526 -7.2278 -0.4268 18 6 4.2116 -5.8444 0.0012 19 1 -0.4851 0.8399 -0.0004 20 1 0.6243 -2.5568 -0.8903 21 1 0.6249 -2.5571 0.8897 22 1 3.1569 -3.4353 -0.0002 23 1 3.4838 -8.9761 -0.7159 24 1 3.7814 -8.5591 0.9994 25 1 4.9095 -7.2693 -1.5047 26 1 5.6701 -7.4705 0.1092 27 1 4.5663 -5.5907 1.0001 28 1 4.5144 -5.0808 -0.7152 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307347019.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:26 Heat of formation + Delta-G solvation = -63.617384 kcal Electronic energy + Delta-G solvation = -13480.354205 eV Core-core repulsion = 10941.924744 eV Total energy + Delta-G solvation = -2538.429461 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.90630 -38.80912 -37.24698 -36.15691 -34.36013 -30.81798 -29.45984 -28.70203 -25.05394 -22.84955 -21.64296 -20.24211 -18.79565 -17.88531 -17.08249 -16.70449 -16.30416 -15.82102 -15.18325 -14.19793 -14.09919 -13.98457 -13.83148 -13.49171 -13.29598 -13.02713 -12.85692 -12.75128 -12.23290 -12.09353 -11.91119 -11.63479 -11.46762 -10.82600 -10.72675 -9.99072 -9.64638 -8.29934 -6.47008 0.12782 1.16156 1.43112 1.44607 1.58146 2.27413 2.31306 2.56533 3.05129 3.47511 3.63309 4.05939 4.18980 4.56866 4.65248 4.79392 4.88513 4.91088 5.10367 5.17631 5.21411 5.26414 5.34456 5.46208 5.67747 5.82835 6.63407 6.87174 7.21788 7.43798 8.82696 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.042893 B = 0.006060 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.634909 B = 4619.199042 C = 5234.624295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.532 3.468 12 O -0.585 6.585 13 C -0.192 4.192 14 C -0.021 4.021 15 Cl -0.063 7.063 16 C -0.083 4.083 17 C -0.106 4.106 18 C -0.085 4.085 19 H 0.269 0.731 20 H -0.013 1.013 21 H -0.013 1.013 22 H 0.408 0.592 23 H 0.103 0.897 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.743 -14.673 -0.104 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.348 5.348 11 C 0.321 3.679 12 O -0.467 6.467 13 C -0.196 4.196 14 C -0.050 4.050 15 Cl -0.033 7.033 16 C -0.120 4.120 17 C -0.143 4.143 18 C -0.123 4.123 19 H 0.078 0.922 20 H 0.005 0.995 21 H 0.005 0.995 22 H 0.244 0.756 23 H 0.121 0.879 24 H 0.130 0.870 25 H 0.105 0.895 26 H 0.133 0.867 27 H 0.118 0.882 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.612 -14.739 -0.107 19.399 hybrid contribution -0.524 1.097 0.029 1.216 sum 12.087 -13.642 -0.077 18.227 Atomic orbital electron populations 1.70148 1.08355 1.28549 1.49974 1.26096 0.95784 1.04001 0.93785 0.85078 0.79145 0.77114 0.77668 1.17425 1.20459 1.20451 1.21629 0.94329 0.90404 1.52904 0.89688 1.18570 0.88680 0.84279 0.94100 1.46082 1.11195 1.05241 1.72281 1.18642 0.88281 0.83948 0.77035 1.90782 1.18233 1.85473 1.52253 1.22129 0.98227 0.91809 1.07417 1.24925 0.87592 0.95449 0.97045 1.98390 1.20736 1.88413 1.95809 1.21647 0.87730 0.97645 1.05016 1.22468 0.97704 0.91101 1.03027 1.21333 0.86247 1.00701 1.03971 0.92234 0.99456 0.99463 0.75620 0.87857 0.86956 0.89525 0.86658 0.88207 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.65 15 2 C 0.00 0.16 5.46 84.65 0.46 0.62 15 3 Si 0.99 42.48 29.54 68.60 2.03 44.50 15 4 H -0.25 -9.89 7.11 99.48 0.71 -9.18 15 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 15 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 7 C -0.55 -30.59 9.28 25.60 0.24 -30.36 15 8 H 0.09 4.21 7.60 -2.91 -0.02 4.19 15 9 C 0.27 15.09 5.43 85.63 0.46 15.55 15 10 N -0.70 -31.12 5.54 -470.71 -2.61 -33.72 15 11 C 0.53 23.20 7.79 86.49 0.67 23.88 15 12 O -0.59 -30.75 14.99 -4.17 -0.06 -30.81 15 13 C -0.19 -5.91 6.10 -18.65 -0.11 -6.02 15 14 C -0.02 -0.58 6.77 24.65 0.17 -0.42 15 15 Cl -0.06 -2.04 27.25 -2.72 -0.07 -2.12 15 16 C -0.08 -1.29 6.80 30.51 0.21 -1.08 15 17 C -0.11 -1.31 7.16 31.67 0.23 -1.08 15 18 C -0.09 -1.67 6.02 30.52 0.18 -1.49 15 19 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 20 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 15 21 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 15 22 H 0.41 14.96 7.32 -92.71 -0.68 14.28 15 23 H 0.10 1.29 8.14 -2.39 -0.02 1.27 15 24 H 0.11 1.35 8.14 -2.38 -0.02 1.33 15 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 15 26 H 0.12 0.77 8.14 -2.39 -0.02 0.75 15 27 H 0.10 1.70 8.14 -2.39 -0.02 1.68 15 28 H 0.09 1.65 7.82 -2.39 -0.02 1.63 15 Total: -1.00 -74.19 260.76 2.57 -71.62 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.49 Total: 7.58 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 2.51 Total: -0.40 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -2.32 Total: -90.37 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.06 Total: -30.81 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.07 Total: -2.12 kcal Total: -74.19 2.57 -71.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307347019.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.999 kcal (2) G-P(sol) polarization free energy of solvation -74.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds