Wall clock time and date at job start Mon Mar 30 2020 03:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37094 * 119.99912 * 2 1 4 4 H 1.08004 * 120.00316 * 204.66479 * 3 2 1 5 5 C 1.38951 * 120.00138 * 24.66493 * 3 2 1 6 6 N 1.31405 * 119.99963 * 10.37131 * 5 3 2 7 7 Si 1.86800 * 120.00455 * 190.36565 * 5 3 2 8 8 H 1.48505 * 109.46644 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47298 * 119.99857 * 7 5 3 10 10 H 1.48493 * 109.47463 * 240.00645 * 7 5 3 11 11 C 1.34774 * 120.00307 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00079 * 184.78862 * 11 2 1 13 13 C 1.50706 * 119.99866 * 4.78312 * 11 2 1 14 14 H 1.08998 * 109.95775 * 328.30573 * 13 11 2 15 15 C 1.54027 * 109.96941 * 89.58561 * 13 11 2 16 16 S 1.81920 * 104.38882 * 152.17045 * 15 13 11 17 17 C 1.71761 * 97.66146 * 341.14243 * 16 15 13 18 18 O 1.21329 * 125.75471 * 178.81982 * 17 16 15 19 19 C 1.50441 * 108.49212 * 358.79272 * 17 16 15 20 20 H 1.08996 * 109.46607 * 265.16579 * 1 2 3 21 21 H 1.09001 * 109.47131 * 25.16955 * 1 2 3 22 22 H 1.09002 * 109.46807 * 145.16806 * 1 2 3 23 23 H 0.97003 * 120.00477 * 179.97438 * 6 5 3 24 24 H 1.08995 * 110.45089 * 270.89615 * 15 13 11 25 25 H 1.08998 * 110.45005 * 33.44973 * 15 13 11 26 26 H 1.08996 * 109.25069 * 261.50060 * 19 17 16 27 27 H 1.09003 * 109.24677 * 142.13576 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1566 1.2300 -0.3903 5 6 1.5508 2.3357 0.5022 6 7 0.4161 2.2508 1.1594 7 14 2.3577 4.0005 0.2432 8 1 3.6182 3.8258 -0.5223 9 1 1.4367 4.8843 -0.5156 10 1 2.6596 4.6147 1.5610 11 6 2.1390 -1.1671 -0.0005 12 8 3.3487 -1.1690 0.0872 13 6 1.3894 -2.4700 -0.1099 14 1 0.4119 -2.3777 0.3633 15 6 1.2233 -2.8585 -1.5911 16 16 1.1226 -4.6748 -1.5735 17 6 1.8131 -4.9274 -0.0213 18 8 1.9715 -6.0028 0.5177 19 6 2.1891 -3.5905 0.5570 20 1 -0.3632 -0.0866 1.0240 21 1 -0.3633 0.9301 -0.4371 22 1 -0.3633 -0.8436 -0.5870 23 1 -0.0024 3.0525 1.5103 24 1 0.3067 -2.4302 -1.9967 25 1 2.0867 -2.5306 -2.1700 26 1 3.2532 -3.4164 0.3976 27 1 1.9829 -3.5911 1.6274 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307461200.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:43 Heat of formation + Delta-G solvation = -84.604103 kcal Electronic energy + Delta-G solvation = -13995.460821 eV Core-core repulsion = 11458.165014 eV Total energy + Delta-G solvation = -2537.295807 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.98632 -40.00653 -36.94734 -36.00560 -33.59797 -29.56112 -28.27548 -26.97658 -25.35147 -22.81046 -20.49719 -18.97446 -18.62365 -18.32973 -17.04130 -16.69812 -16.14393 -15.90480 -15.76727 -15.26081 -14.87957 -14.47730 -14.09778 -13.68817 -13.36520 -13.10080 -12.78698 -12.68179 -12.40219 -12.25341 -12.11165 -12.08971 -11.00442 -10.62976 -10.38660 -9.69700 -9.55378 -8.35351 -6.01363 0.24836 0.34895 0.85161 1.36665 1.43968 1.56227 1.90415 2.25995 2.79410 3.04740 3.26136 3.56499 3.68560 3.78374 4.19174 4.26528 4.44483 4.67215 4.78372 4.82493 5.05171 5.42972 5.44645 5.76925 6.08404 6.44795 7.13909 7.42790 7.96099 8.66741 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.058540 B = 0.006710 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.188925 B = 4171.936348 C = 4271.779195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.451 5.451 3 C -0.341 4.341 4 H 0.074 0.926 5 C 0.001 3.999 6 N -0.894 5.894 7 Si 0.987 3.013 8 H -0.273 1.273 9 H -0.266 1.266 10 H -0.280 1.280 11 C 0.451 3.549 12 O -0.626 6.626 13 C -0.090 4.090 14 H 0.127 0.873 15 C -0.074 4.074 16 S -0.140 6.140 17 C 0.368 3.632 18 O -0.452 6.452 19 C -0.172 4.172 20 H 0.043 0.957 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.274 0.726 24 H 0.149 0.851 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 -5.843 -4.780 8.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.169 5.169 3 C -0.469 4.469 4 H 0.092 0.908 5 C -0.201 4.201 6 N -0.532 5.532 7 Si 0.811 3.189 8 H -0.197 1.197 9 H -0.191 1.191 10 H -0.205 1.205 11 C 0.238 3.762 12 O -0.513 6.513 13 C -0.112 4.112 14 H 0.145 0.855 15 C -0.222 4.222 16 S 0.095 5.905 17 C 0.137 3.863 18 O -0.334 6.334 19 C -0.217 4.217 20 H 0.061 0.939 21 H 0.081 0.919 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.167 0.833 25 H 0.123 0.877 26 H 0.132 0.868 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.315 -7.028 -5.232 9.767 hybrid contribution 0.951 1.800 1.173 2.350 sum -3.364 -5.228 -4.059 7.424 Atomic orbital electron populations 1.21592 0.79103 1.01530 1.00830 1.43794 1.06910 1.04351 1.61806 1.19664 1.00642 0.85872 1.40714 0.90812 1.26043 0.96920 1.02833 0.94325 1.70042 1.18419 1.30822 1.33928 0.84968 0.78426 0.77481 0.78069 1.19726 1.19051 1.20529 1.20230 0.87625 0.85239 0.83097 1.90507 1.16213 1.87327 1.57291 1.21551 1.01303 0.92229 0.96133 0.85468 1.24218 1.09429 0.90966 0.97599 1.85858 1.72253 1.09873 1.22565 1.25669 0.77407 0.92248 0.90989 1.90596 1.49021 1.29618 1.64115 1.22456 1.04324 0.90938 1.03956 0.93851 0.91869 0.90648 0.91626 0.83326 0.87749 0.86771 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.32 8.10 127.77 1.04 5.36 15 2 N -0.45 -20.99 3.01 -658.88 -1.99 -22.98 15 3 C -0.34 -18.04 9.22 84.04 0.77 -17.26 15 4 H 0.07 4.19 7.49 -2.91 -0.02 4.17 15 5 C 0.00 0.06 5.09 84.93 0.43 0.49 15 6 N -0.89 -44.61 10.72 21.66 0.23 -44.38 15 7 Si 0.99 40.30 29.57 68.60 2.03 42.33 15 8 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 9 H -0.27 -10.20 7.11 99.48 0.71 -9.49 15 10 H -0.28 -11.33 7.11 99.48 0.71 -10.63 15 11 C 0.45 19.51 6.64 87.66 0.58 20.09 15 12 O -0.63 -32.40 15.44 -3.06 -0.05 -32.44 15 13 C -0.09 -2.71 2.24 -11.20 -0.03 -2.74 15 14 H 0.13 3.31 6.64 -2.39 -0.02 3.29 15 15 C -0.07 -1.79 6.52 72.33 0.47 -1.32 15 16 S -0.14 -3.47 22.85 -56.49 -1.29 -4.76 15 17 C 0.37 10.90 7.83 71.15 0.56 11.46 15 18 O -0.45 -15.68 18.03 -3.18 -0.06 -15.73 15 19 C -0.17 -5.20 5.61 29.76 0.17 -5.04 15 20 H 0.04 1.74 7.86 -2.39 -0.02 1.72 15 21 H 0.06 2.65 6.70 -2.39 -0.02 2.64 15 22 H 0.08 2.12 5.98 -2.39 -0.01 2.10 15 23 H 0.27 12.85 8.31 -92.71 -0.77 12.08 15 24 H 0.15 2.77 7.61 -2.39 -0.02 2.75 15 25 H 0.10 2.75 7.95 -2.39 -0.02 2.73 15 26 H 0.11 3.94 6.98 -2.39 -0.02 3.92 15 27 H 0.12 3.33 8.14 -2.39 -0.02 3.31 15 Total: -1.00 -62.98 245.86 4.07 -58.92 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.19 Total: 8.02 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 3.99 Total: 11.03 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: -1.75 Total: -67.36 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -0.10 Total: -48.18 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.29 Total: -4.76 kcal Total: -62.98 4.07 -58.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307461200.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.687 kcal (2) G-P(sol) polarization free energy of solvation -62.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds