Wall clock time and date at job start Mon Mar 30 2020 03:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34295 * 125.27049 * 2 1 4 4 C 1.46951 * 106.62661 * 180.14194 * 3 2 1 5 5 C 1.41278 * 127.09646 * 179.86953 * 4 3 2 6 6 H 1.07997 * 119.99828 * 171.85075 * 5 4 3 7 7 C 1.39641 * 120.00033 * 352.11801 * 5 4 3 8 8 N 1.31087 * 119.99757 * 6.09551 * 7 5 4 9 9 Si 1.86797 * 120.00357 * 186.08834 * 7 5 4 10 10 H 1.48497 * 109.46983 * 90.00109 * 9 7 5 11 11 H 1.48502 * 109.47309 * 210.00572 * 9 7 5 12 12 H 1.48500 * 109.46958 * 330.00492 * 9 7 5 13 13 C 1.39464 * 105.80892 * 359.60442 * 4 3 2 14 14 Br 1.89103 * 126.09505 * 180.26408 * 13 4 3 15 15 N 1.35522 * 107.80772 * 0.24018 * 13 4 3 16 16 H 0.97003 * 124.85422 * 180.02562 * 15 13 4 17 17 H 1.09004 * 109.46619 * 270.28338 * 1 2 3 18 18 H 1.09003 * 109.47378 * 30.27622 * 1 2 3 19 19 H 1.08996 * 109.46887 * 150.28212 * 1 2 3 20 20 H 1.08003 * 126.68879 * 359.97438 * 3 2 1 21 21 H 0.97003 * 120.00151 * 180.02562 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2825 1.0964 0.0000 4 6 3.6749 0.6266 -0.0035 5 6 4.8425 1.4220 -0.0073 6 1 5.8103 0.9608 0.1230 7 6 4.7448 2.8050 -0.1739 8 7 3.5670 3.3795 -0.2069 9 14 6.2923 3.8363 -0.3495 10 1 6.6582 3.9392 -1.7849 11 1 6.0464 5.1949 0.1974 12 1 7.4024 3.1946 0.3996 13 6 3.6059 -0.7663 0.0039 14 35 5.0770 -1.9545 0.0108 15 7 2.2967 -1.1164 0.0058 16 1 1.9668 -2.0286 0.0111 17 1 -0.3633 0.0051 1.0277 18 1 -0.3634 0.8875 -0.5181 19 1 -0.3633 -0.8925 -0.5094 20 1 1.9480 2.1234 -0.0004 21 1 3.4990 4.3401 -0.3229 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307620219.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:38 Heat of formation + Delta-G solvation = 27.644883 kcal Electronic energy + Delta-G solvation = -9021.268582 eV Core-core repulsion = 7136.535770 eV Total energy + Delta-G solvation = -1884.732812 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 228.980 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.98609 -33.45500 -30.96093 -29.33432 -29.14017 -25.86887 -23.39451 -19.14649 -18.64998 -16.52896 -15.22735 -14.68817 -13.40953 -12.73926 -12.61372 -11.88033 -11.81311 -11.26562 -11.11476 -11.02517 -10.88931 -10.06963 -9.59112 -9.46822 -9.17319 -9.08655 -7.17630 -6.61275 -6.41256 -4.01433 2.99871 3.08179 3.21907 3.27404 3.56098 4.15062 4.35790 4.90431 5.61630 5.93194 5.97367 6.21566 6.48978 7.23149 7.35408 7.51607 7.80893 8.28944 8.40041 8.84580 8.97394 9.17956 9.24712 10.53837 Molecular weight = 228.98amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.014707 C = 0.009386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.104287 B = 1903.338163 C = 2982.354795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.001 4.001 3 C -0.198 4.198 4 C 0.091 3.909 5 C -0.435 4.435 6 H 0.076 0.924 7 C 0.072 3.928 8 N -0.818 5.818 9 Si 0.911 3.089 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.265 1.265 13 C -0.157 4.157 14 Br -0.067 7.067 15 N -0.569 5.569 16 H 0.387 0.613 17 H 0.055 0.945 18 H 0.070 0.930 19 H 0.047 0.953 20 H 0.157 0.843 21 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 -5.933 0.085 6.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.113 4.113 3 C -0.227 4.227 4 C 0.081 3.919 5 C -0.468 4.468 6 H 0.094 0.906 7 C -0.142 4.142 8 N -0.447 5.447 9 Si 0.736 3.264 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.189 1.189 13 C -0.339 4.339 14 Br 0.015 6.985 15 N -0.172 5.172 16 H 0.219 0.781 17 H 0.074 0.926 18 H 0.089 0.911 19 H 0.066 0.934 20 H 0.174 0.826 21 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.818 -6.264 0.073 6.317 hybrid contribution 0.235 0.260 -0.109 0.367 sum -0.583 -6.004 -0.036 6.032 Atomic orbital electron populations 1.20156 0.90335 1.01509 1.00981 1.20115 0.91745 0.87186 1.12223 1.22392 0.91597 0.97144 1.11588 1.18324 0.93194 0.86996 0.93368 1.18874 0.93295 0.90897 1.43692 0.90629 1.25750 0.96960 0.98387 0.93078 1.69814 1.24013 1.11280 1.39597 0.86276 0.82259 0.78751 0.79087 1.19785 1.20618 1.18882 1.21309 0.81303 0.91945 1.39329 1.96237 1.41275 1.62073 1.98918 1.40804 1.04100 1.06109 1.66186 0.78051 0.92597 0.91143 0.93445 0.82610 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.40 36.01 0.37 -0.83 14 2 C 0.00 -0.02 7.10 -81.79 -0.58 -0.60 14 3 C -0.20 -5.17 9.75 -37.45 -0.37 -5.54 14 4 C 0.09 2.51 6.09 -104.76 -0.64 1.87 14 5 C -0.43 -12.18 9.20 -37.90 -0.35 -12.53 14 6 H 0.08 2.08 7.71 -52.49 -0.40 1.68 14 7 C 0.07 1.90 5.48 -17.35 -0.10 1.81 14 8 N -0.82 -21.87 10.47 55.53 0.58 -21.28 14 9 Si 0.91 19.98 29.56 -169.99 -5.03 14.95 14 10 H -0.27 -5.92 7.11 56.52 0.40 -5.51 14 11 H -0.28 -5.99 7.11 56.52 0.40 -5.58 14 12 H -0.26 -5.77 7.11 56.52 0.40 -5.37 14 13 C -0.16 -3.90 7.80 -15.47 -0.12 -4.02 14 14 Br -0.07 -1.44 33.76 -68.01 -2.30 -3.73 14 15 N -0.57 -12.56 5.95 -6.74 -0.04 -12.60 14 16 H 0.39 7.22 8.96 -40.82 -0.37 6.85 14 17 H 0.06 0.86 8.14 -51.93 -0.42 0.44 14 18 H 0.07 1.12 8.14 -51.93 -0.42 0.70 14 19 H 0.05 0.69 8.14 -51.93 -0.42 0.26 14 20 H 0.16 4.20 6.06 -52.48 -0.32 3.89 14 21 H 0.27 6.66 8.30 -40.82 -0.34 6.32 14 LS Contribution 212.34 15.07 3.20 3.20 Total: -1.00 -28.79 212.34 -6.85 -35.63 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -1.49 Total: 3.67 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -1.77 Total: -19.84 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.54 Total: -33.88 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Atomic # 35 Polarization: -1.44 SS G_CDS: -2.30 Total: -3.73 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -28.79 -6.85 -35.63 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307620219.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.276 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds