Wall clock time and date at job start Mon Mar 30 2020 03:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00597 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99622 * 179.97438 * 11 10 9 14 14 H 1.09004 * 109.96034 * 59.79080 * 13 11 10 15 15 C 1.54026 * 109.97642 * 298.55032 * 13 11 10 16 16 S 1.81916 * 104.39411 * 207.83079 * 15 13 11 17 17 C 1.71756 * 97.66104 * 18.85751 * 16 15 13 18 18 O 1.21336 * 125.75687 * 181.22327 * 17 16 15 19 19 C 1.50448 * 108.49237 * 1.20196 * 17 16 15 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 24 24 H 1.09001 * 110.44657 * 326.55638 * 15 13 11 25 25 H 1.08996 * 110.45125 * 88.97364 * 15 13 11 26 26 H 1.08995 * 109.24879 * 217.86143 * 19 17 16 27 27 H 1.08998 * 109.24510 * 98.50619 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0287 -0.0006 14 1 3.3675 -5.9764 0.8843 15 6 3.6000 -5.9793 -1.2728 16 16 4.0637 -7.7128 -1.5718 17 6 2.8414 -8.4453 -0.6130 18 8 2.6970 -9.6373 -0.4377 19 6 1.9802 -7.3600 -0.0267 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.1567 -3.4354 -0.0002 24 1 3.0234 -5.5892 -2.1116 25 1 4.4875 -5.3691 -1.1055 26 1 1.6993 -7.6340 0.9902 27 1 1.0789 -7.2512 -0.6299 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307657222.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:10 Heat of formation + Delta-G solvation = -86.233432 kcal Electronic energy + Delta-G solvation = -13424.042157 eV Core-core repulsion = 10886.675697 eV Total energy + Delta-G solvation = -2537.366460 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.82009 -38.85680 -35.24756 -34.40866 -32.45777 -28.74891 -27.34329 -25.11458 -22.80141 -21.49292 -19.75831 -17.79438 -17.56416 -16.29755 -15.84846 -15.33681 -15.07170 -14.89903 -14.33312 -14.13096 -13.93853 -13.15129 -13.00283 -12.16204 -12.05487 -11.79787 -11.46753 -11.27040 -11.07311 -10.96875 -10.41781 -9.64536 -9.50907 -9.29822 -8.86122 -8.66639 -8.09731 -6.26613 -4.34541 1.15363 1.36177 1.78097 2.99218 3.17927 3.24452 3.26355 3.58580 4.11741 4.27023 4.46006 4.55196 4.67830 5.09893 5.10385 5.25218 5.39828 5.59233 5.76542 6.75841 7.13440 7.19066 7.36413 7.51842 7.84435 8.39188 8.60783 8.85060 9.32417 10.83409 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.060186 B = 0.005287 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.113467 B = 5295.221903 C = 5652.010056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.704 5.704 11 C 0.510 3.490 12 O -0.546 6.546 13 C -0.110 4.110 14 H 0.117 0.883 15 C -0.084 4.084 16 S -0.175 6.175 17 C 0.368 3.632 18 O -0.419 6.419 19 C -0.173 4.173 20 H 0.267 0.733 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.393 0.607 24 H 0.112 0.888 25 H 0.124 0.876 26 H 0.115 0.885 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.513 -9.685 -1.217 12.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.351 5.351 11 C 0.292 3.708 12 O -0.425 6.425 13 C -0.133 4.133 14 H 0.135 0.865 15 C -0.232 4.232 16 S 0.059 5.941 17 C 0.135 3.865 18 O -0.297 6.297 19 C -0.218 4.218 20 H 0.077 0.923 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.226 0.774 24 H 0.131 0.869 25 H 0.142 0.858 26 H 0.133 0.867 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.316 -10.789 -1.810 13.741 hybrid contribution -0.109 1.599 0.738 1.764 sum 8.206 -9.190 -1.073 12.367 Atomic orbital electron populations 1.69964 1.06137 1.27490 1.48536 1.24951 0.94920 0.99524 0.94542 0.86402 0.79617 0.82544 0.78291 1.20395 1.20966 1.19708 1.21190 0.93283 0.90324 1.53706 0.91792 1.19189 0.88234 0.81796 0.98003 1.46466 1.11422 1.05840 1.71405 1.19819 0.88754 0.84017 0.78218 1.90700 1.16400 1.84510 1.50872 1.21799 0.97415 0.94608 0.99465 0.86499 1.24206 1.03999 0.94111 1.00894 1.86143 1.41669 1.05805 1.60524 1.25665 0.86323 0.92887 0.81675 1.90628 1.67273 1.15990 1.55768 1.22480 1.01266 0.91877 1.06186 0.92322 0.95258 0.95295 0.77446 0.86928 0.85779 0.86693 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.02 13.29 55.43 0.74 -24.28 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 15 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 7 C -0.55 -13.90 9.28 -34.44 -0.32 -14.22 15 8 H 0.06 1.50 7.60 -52.49 -0.40 1.11 15 9 C 0.25 6.06 5.43 -5.19 -0.03 6.03 15 10 N -0.70 -12.83 5.48 -61.47 -0.34 -13.16 15 11 C 0.51 8.62 7.05 -10.99 -0.08 8.54 15 12 O -0.55 -11.60 15.55 5.56 0.09 -11.52 15 13 C -0.11 -1.27 3.12 -91.25 -0.29 -1.55 15 14 H 0.12 1.08 8.14 -51.93 -0.42 0.66 15 15 C -0.08 -0.81 6.57 37.69 0.25 -0.57 15 16 S -0.18 -1.95 22.85 -107.50 -2.46 -4.40 15 17 C 0.37 4.70 7.83 35.88 0.28 4.98 15 18 O -0.42 -6.50 18.03 5.51 0.10 -6.40 15 19 C -0.17 -2.08 5.36 -28.02 -0.15 -2.23 15 20 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 21 H 0.03 0.80 8.14 -51.93 -0.42 0.37 15 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.39 5.89 8.29 -40.82 -0.34 5.55 15 24 H 0.11 1.16 7.95 -51.93 -0.41 0.74 15 25 H 0.12 0.92 8.14 -51.93 -0.42 0.49 15 26 H 0.11 1.30 8.14 -51.93 -0.42 0.88 15 27 H 0.13 1.74 7.18 -51.93 -0.37 1.36 15 LS Contribution 256.17 15.07 3.86 3.86 Total: -1.00 -30.82 256.17 -6.23 -37.05 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -2.77 Total: 1.33 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -0.43 Total: 2.60 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.40 Total: -37.45 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.19 Total: -17.92 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.46 Total: -4.40 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.82 -6.23 -37.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307657222.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.184 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds